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Full-Text Articles in Physical Sciences and Mathematics

Impacts Of Physical Transport On Estuarine Phytoplankton Dynamics And Harmful Algal Blooms, Qubin Qin Jan 2019

Impacts Of Physical Transport On Estuarine Phytoplankton Dynamics And Harmful Algal Blooms, Qubin Qin

Dissertations, Theses, and Masters Projects

The spatial and temporal variability of phytoplankton biomass in estuaries is determined by both local processes and transport processes. Local processes include biological processes (e.g., photosynthesis, respiration/excretion, and grazing) and settling, whereas transport processes include advective and diffusive transports. Transport processes have been demonstrated to regulate phytoplankton dynamics significantly by distributing both phytoplankton and other dissolved and particulate substances (e.g., nutrients, salts, sediments, and chromophoric dissolved organic matter). Yet, these transport properties lack a framework that unifies the pieced description of their various effects, and quantification of their importance under various environmental conditions. This dissertation highlights the role of horizontal …


On Enhancing Security Of Password-Based Authentication, Yue Li Jan 2019

On Enhancing Security Of Password-Based Authentication, Yue Li

Dissertations, Theses, and Masters Projects

Password has been the dominant authentication scheme for more than 30 years, and it will not be easily replaced in the foreseeable future. However, password authentication has long been plagued by the dilemma between security and usability, mainly due to human memory limitations. For example, a user often chooses an easy-to-guess (weak) password since it is easier to remember. The ever increasing number of online accounts per user even exacerbates this problem. In this dissertation, we present four research projects that focus on the security of password authentication and its ecosystem. First, we observe that personal information plays a very …


Seasonal Variability Of The Co2-System Throughout The Chesapeake Bay Mainstem, Jaclyn Rain Friedman Jan 2019

Seasonal Variability Of The Co2-System Throughout The Chesapeake Bay Mainstem, Jaclyn Rain Friedman

Dissertations, Theses, and Masters Projects

Declining water quality, in addition to hypoxia and eutrophication, may have a significant impact on the seasonality of biogeochemical parameters throughout the mainstem of the Chesapeake Bay. The carbonate (CO2) system in the Chesapeake Bay experiences seasonal and spatial complexities and is influenced by both natural and anthropogenic variability. Although site-specific studies investigating CO2-system variability exist within the Chesapeake Bay, few studies have investigated the seasonality of the CO2-system throughout the entire mainstem. Additionally, recent comprehensive studies investigating over 50 estuaries along the East Coast of the United States suggest that estuarine systems are heterotrophic and act as sources of …


Computational Graphics And Statistical Analysis: Mixed Type Random Variables, Confidence Regions, And Golden Quantile Rank Sets, Christopher Weld Jan 2019

Computational Graphics And Statistical Analysis: Mixed Type Random Variables, Confidence Regions, And Golden Quantile Rank Sets, Christopher Weld

Dissertations, Theses, and Masters Projects

This dissertation has three principle areas of research: mixed type random variables, confidence regions, and golden quantile rank sets. While each offers a specific focus, some common themes persist; broadly stated, there are three. First, computational graphics play a critical role. Second, software development facilitates implementation and accessibility. Third, statistical analysis---often attributable to the aforementioned automation---provides valuable insights and applications. Each of the principle research areas are briefly summarized next. Mixed type random variables are a hybrid of continuous and discrete random variables, having components of both continuous probability density and discrete probability mass. This dissertation illustrates the challenges inherent …


Interfacial Forces Of 2d Materials At The Oil–Water Interface, William Winsor Dickinson Jan 2019

Interfacial Forces Of 2d Materials At The Oil–Water Interface, William Winsor Dickinson

Dissertations, Theses, and Masters Projects

Two-dimensional (2D) materials, including graphene and graphene oxide (GO), are a subject of interest for many researchers due to their exceptional properties (strength, conductivity, etc.). These materials, comprised of atomically-thin sheets, may naturally occur stacked together like sheets of paper, but their most interesting properties emerge when separated into individual layers. However, scaling up the processes used to isolate single sheets of some of these materials, particularly graphene, has proven problematic. They can be fiercely resistant to exfoliation, difficult to disperse, and have a worrying propensity to restack. All these problems contribute to the great difficulty these fascinating materials have …


Partitioning Of Hydrophobic Organic Contaminants And Microbial Communities On Microplastics, Kelley Ann Uhlig Jan 2019

Partitioning Of Hydrophobic Organic Contaminants And Microbial Communities On Microplastics, Kelley Ann Uhlig

Dissertations, Theses, and Masters Projects

Microplastic contamination of aquatic environments has only recently caught the attention of scientists, regulators and the public. Microplastics are typically more recalcitrant than naturally occurring polymers and so have the potential to cause a range of issues, including increased exposure of marine life to chemical contaminants sorbed to or leached from microplastics, negative impacts due to ingestion of microplastics by biota, and the potential to carry and transport pathogenic and invasive species long distances. Bio-based, bio-degradable polymers have begun to gain market share as an alternative to traditional petrochemical-based plastics, but not much is known about their impacts in marine …


Human Dimensions Of A Participatory, Collaborative Modeling Process - Oysterfutures, Taylor Dawn Goelz Jan 2019

Human Dimensions Of A Participatory, Collaborative Modeling Process - Oysterfutures, Taylor Dawn Goelz

Dissertations, Theses, and Masters Projects

Participatory, collaborative modeling processes represent a unique decision-making technique within natural resources management that allows for the combination of stakeholder involvement with the analytical and predictive power of scientific models. The continued use of participatory modeling within decision-making processes depends in part upon the willingness of stakeholders to participate. Continued participation of stakeholders is key to the persistence and overall success of these processes, and yet limited information exists concerning the impacts of these processes on participants. The consideration of human dimensions advances our understanding of the design and function of participatory modeling processes, including their ability to create consensus …


Global Shipping Container Monitoring Using Machine Learning With Multi-Sensor Hubs And Catadioptric Imaging, Victor Esteban Trujillo Jan 2019

Global Shipping Container Monitoring Using Machine Learning With Multi-Sensor Hubs And Catadioptric Imaging, Victor Esteban Trujillo

Dissertations, Theses, and Masters Projects

We describe a framework for global shipping container monitoring using machine learning with multi-sensor hubs and infrared catadioptric imaging. A wireless mesh radio satellite tag architecture provides connectivity anywhere in the world which is a significant improvement to legacy methods. We discuss the design and testing of a low-cost long-wave infrared catadioptric imaging device and multi-sensor hub combination as an intelligent edge computing system that, when equipped with physics-based machine learning algorithms, can interpret the scene inside a shipping container to make efficient use of expensive communications bandwidth. The histogram of oriented gradients and T-channel (HOG+) feature as introduced for …


Applying The Concept Of Thresholds In Ecotoxicology With Focus On The Joint Effects Of Habitat Fragmentation And Contamination, Marcos Krull Jan 2019

Applying The Concept Of Thresholds In Ecotoxicology With Focus On The Joint Effects Of Habitat Fragmentation And Contamination, Marcos Krull

Dissertations, Theses, and Masters Projects

A threshold can be defined as the point where small changes in an environmental driver produce an abrupt change within a biological system. These changes can occur at different levels of organization, from organisms to ecosystems. Although thresholds seem to be receiving more attention by ecotoxicologist, not much is known about how contaminants cause or affect thresholds at the landscape level, such as habitat fragmentation thresholds. Habitat fragmentation thresholds can occur due to rapid changes in the landscape structure after a certain amount of habitat is lost, which can cause abrupt effects on the movement of organisms, population abundance and …


Complex Mixtures: Identifying And Characterizing Secondary Organic Aerosols, Emma Quinn Walhout Jan 2019

Complex Mixtures: Identifying And Characterizing Secondary Organic Aerosols, Emma Quinn Walhout

Dissertations, Theses, and Masters Projects

Complex organic mixtures in the environment can contain hundreds to thousands of different organic molecules, and their composition and reactivity can have important environmental implications. In addition to gases, the atmosphere is made of a variety of small liquids and solids called aerosols. These aerosols have large impacts on human health, climate, and atmospheric chemical reactions. Here, secondary organic aerosol (SOA) from the ozonolysis of α-pinene is characterized. The atmospheric lifetime of SOA is very uncertain, but recent laboratory and modeling studies have demonstrated that photolysis is potentially an important process for organic mass loss from aerosol particles.1-5 Photolysis modifies …


Extraction And Parametrization Of Isobaric Trinucleon Elastic Cross Sections And Form Factors, Scott Kevin Barcus Jan 2019

Extraction And Parametrization Of Isobaric Trinucleon Elastic Cross Sections And Form Factors, Scott Kevin Barcus

Dissertations, Theses, and Masters Projects

By mining data from Jefferson Lab Hall A experiment E08-014 a new measurement of the 3He elastic cross section at Q^2 ≈ 34 fm^−2 was extracted from a large quasielastic background. This new data point falls approximately halfway between the first and second diffractive minima of the 3He form factors. When combined with recent high Q^2 3He elastic cross section measurements from JLab this new point improves our knowledge of the cross section and form factors at large momentum transfers. The new high Q^2 data motivate a reanalysis of the 3He elastic cross section world data and promise an improved …


Learning Code Transformations Via Neural Machine Translation, Michele Tufano Jan 2019

Learning Code Transformations Via Neural Machine Translation, Michele Tufano

Dissertations, Theses, and Masters Projects

Source code evolves – inevitably – to remain useful, secure, correct, readable, and efficient. Developers perform software evolution and maintenance activities by transforming existing source code via corrective, adaptive, perfective, and preventive changes. These code changes are usually managed and stored by a variety of tools and infrastructures such as version control, issue trackers, and code review systems. Software Evolution and Maintenance researchers have been mining these code archives in order to distill useful insights on the nature of such developers’ activities. One of the long-lasting goal of Software Engineering research is to better support and automate different types of …


Controlling Infectious Disease: Prevention And Intervention Through Multiscale Models, Adrienna N. Bingham Jan 2019

Controlling Infectious Disease: Prevention And Intervention Through Multiscale Models, Adrienna N. Bingham

Dissertations, Theses, and Masters Projects

Controlling infectious disease spread and preventing disease onset are ongoing challenges, especially in the presence of newly emerging diseases. While vaccines have successfully eradicated smallpox and reduced occurrence of many diseases, there still exists challenges such as fear of vaccination, the cost and difficulty of transporting vaccines, and the ability of attenuated viruses to evolve, leading to instances such as vaccine derived poliovirus. Antibiotic resistance due to mistreatment of antibiotics and quickly evolving bacteria contributes to the difficulty of eradicating diseases such as tuberculosis. Additionally, bacteria and fungi are able to produce an extracellular matrix in biofilms that protects them …


Evolution Of The Genome-Wide Distribution Of Genes And Transposons, Ronald Dutilh Smith Jan 2019

Evolution Of The Genome-Wide Distribution Of Genes And Transposons, Ronald Dutilh Smith

Dissertations, Theses, and Masters Projects

Genomes exhibit a striking amount of complexity across a broad range of scales. This includes variation in the spatial distribution of features such as genes and transposable elements (TEs), which is observed both between species and among individuals in natural and artificial populations. Additionally, all eukaryotes studied to date have had gene duplications occur in their evolutionary history. In this dissertation, we develop a statistical method for analyzing relative changes in the expression of duplicated genes. We show that this method performs better than could otherwise be achieved using traditional methods of differential gene expression analysis. We apply this method …


Investigation Of Pattern Formation In Marine Environments Through Mathematical Modeling And Analysis Of Remotely Sensed Data, Sofya Zaytseva Jan 2019

Investigation Of Pattern Formation In Marine Environments Through Mathematical Modeling And Analysis Of Remotely Sensed Data, Sofya Zaytseva

Dissertations, Theses, and Masters Projects

Pattern formation in ecological systems refers to a nonuniform distribution of animal and plant species across a landscape. Pattern formation can be observed in many aquatic and terrestrial systems and can provide important insights into their dynamics and ability to cope with environmental changes. In this dissertation, we focus on pattern formation in tidal marshes and oyster reefs, two important habitats that provide a number of essential ecosystem services. Both of these systems have also experienced dramatic losses, prompting much research to investigate their dynamics as and viable restoration and management strategies. The first part of this dissertation focuses on …


Investigating The Molecular Choreography Of Atmospherically Relevant Molecules: A Dynamics Study, Kenneth Jacob Blackshaw Jan 2019

Investigating The Molecular Choreography Of Atmospherically Relevant Molecules: A Dynamics Study, Kenneth Jacob Blackshaw

Dissertations, Theses, and Masters Projects

Investigating and understanding the chemistry of the atmosphere has historically been an important research topic. This importance has only strengthened in the recent decades as technological advancements have drastically increased anthropogenic emissions of hydrocarbons and nitroaromatic compounds. Indeed, we are in an era of unprecedented change of the chemical composition of the troposphere and never before has an in-depth understanding of atmospheric chemical properties been more sought-after. This study seeks to fill that need by probing the molecular dynamics of atmospherically relevant molecules through the use of velocity map imaging (VMI). In particular, we utilize VMI to study the photolysis …


Research On Efficiency And Security For Emerging Distributed Applications, Zijiang Hao Jan 2019

Research On Efficiency And Security For Emerging Distributed Applications, Zijiang Hao

Dissertations, Theses, and Masters Projects

Distributed computing has never stopped its advancement since the early years of computer systems. In recent years, edge computing has emerged as an extension of cloud computing. The main idea of edge computing is to provide hardware resources in proximity to the end devices, thereby offering low network latency and high network bandwidth. However, as an emerging distributed computing paradigm, edge computing currently lacks effective system support. To this end, this dissertation studies the ways of building system support for edge computing. We first study how to support the existing, non-edge-computing applications in edge computing environments. This research leads to …


Optimization Approaches For Open-Locating Dominating Sets, Daniel Blair Sweigart Jan 2019

Optimization Approaches For Open-Locating Dominating Sets, Daniel Blair Sweigart

Dissertations, Theses, and Masters Projects

An Open Locating-Dominating Set (OLD set) is a subset of vertices in a graph such that every vertex in the graph has a neighbor in the OLD set and every vertex has a unique set of neighbors in the OLD set. This can also represent where sensors, capable of detecting an event occurrence at an adjacent vertex, could be placed such that one could always identify the location of an event by the specific vertices that indicated an event occurred in their neighborhood. By the open neighborhood construct, which differentiates OLD sets from identifying codes, a vertex is not able …


Electronic Properties Of Two-Dimensional Van Der Waals Systems, Yohanes Satrio Gani Jan 2019

Electronic Properties Of Two-Dimensional Van Der Waals Systems, Yohanes Satrio Gani

Dissertations, Theses, and Masters Projects

In this dissertation we study the electronic structure of van der Waals systems. A van der Waals systems is a heterostructure in which the different constituents are held together by van der Waals forces. We study two different types of van der Waals systems: van der Waals systems formed by graphene and a monolayer of NbSe2, van der Waals systems obtained by placing graphene nanoribbons on a two-dimensional crystal. For the first type of systems we build a continuous low-energy effective model that takes into account the presence of a twist angle between graphene and NbSe2, and of spin-orbit coupling …


Beyond The Standard Model: Flavor Symmetry, Nonperturbative Unification, Quantum Gravity, And Dark Matter, Shikha Chaurasia Jan 2019

Beyond The Standard Model: Flavor Symmetry, Nonperturbative Unification, Quantum Gravity, And Dark Matter, Shikha Chaurasia

Dissertations, Theses, and Masters Projects

Despite the vast success of the Standard Model of particle physics, it is no secret that is also has its shortcomings, thus providing incentive to look beyond the Standard Model for solutions. In this thesis we focus in particular on a model of horizontal flavor symmetry, unification via a universal Landau pole, emergent gravity, and dark matter. First we explain the observed hierarchies in the elementary fermion mass spectrum via a model based on the double tetrahedral group, the smallest discrete subgroup of SU(2), while relaxing previous assumptions of supersymmetry. A sequential symmetry breaking process results in a hierarchy in …


Scattering A Bose-Einstein Condensate Off A Modulated Barrier, Andrew James Pyle Jan 2019

Scattering A Bose-Einstein Condensate Off A Modulated Barrier, Andrew James Pyle

Dissertations, Theses, and Masters Projects

A quantum pump is a device that transports particles through a circuit with localized time-varying potentials, and without the need for an external applied voltage or chemical potential. Quantum pumping was originally proposed in the context of electron transport in nanowires, but has proven difficult to implement. The ultracold atom approach represents a possible route around the current experimental bottleneck. We present an experiment to study 1D quantum mechanical scattering by an amplitude-modulated barrier. This experiment represents a first step toward implementing a quantum pump for ultracold atoms based on two such barriers modulated out of phase with one another. …


Topics In Proton Structure: Bsm Answers To Its Radius Puzzle And Lattice Subtleties Within Its Momentum Distribution, Michael Chaim Freid Jan 2019

Topics In Proton Structure: Bsm Answers To Its Radius Puzzle And Lattice Subtleties Within Its Momentum Distribution, Michael Chaim Freid

Dissertations, Theses, and Masters Projects

This thesis covers two subjects, briefly outlined below, of hadronic physics. The proton radius puzzle and the muon anomalous magnetic moment discrepancy point to possible signs of lepton-universality violation. We introduce the context and background necessary to understand these two problems. And we analyze two suitable beyond-the-standard-model solutions, one vector-based and one scalar-based, which simultaneously solves both issues. Furthermore, we demonstrate that the parameter space of the respective solutions can be chosen so as to not be completely forbidden by considered experimental constraints. Specifically, we show that certain violations, analyzed by other authors in the context of similar solutions to …


Persistence And Extinction Dynamics In Reaction-Diffusion-Advection Stream Population Model With Allee Effect Growth, Yan Wang Jan 2019

Persistence And Extinction Dynamics In Reaction-Diffusion-Advection Stream Population Model With Allee Effect Growth, Yan Wang

Dissertations, Theses, and Masters Projects

The question how aquatic populations persist in rivers when individuals are constantly lost due to downstream drift has been termed the ``drift paradox." Reaction-diffusion-advection models have been used to describe the spatial-temporal dynamics of stream population and they provide some qualitative explanations to the paradox. Here random undirected movement of individuals in the environment is described by passive diffusion, and an advective term is used to describe the directed movement in a river caused by the flow. In this work, the effect of spatially varying Allee effect growth rate on the dynamics of reaction-diffusion-advection models for the stream population is …


Improving Wifi Sensing And Networking With Channel State Information, Yongsen Ma Jan 2019

Improving Wifi Sensing And Networking With Channel State Information, Yongsen Ma

Dissertations, Theses, and Masters Projects

In recent years, WiFi has a very rapid growth due to its high throughput, high efficiency, and low costs. Multiple-Input Multiple-Output (MIMO) and Orthogonal Frequency-Division Multiplexing (OFDM) are two key technologies for providing high throughput and efficiency for WiFi systems. MIMO-OFDM provides Channel State Information (CSI) which represents the amplitude attenuation and phase shift of each transmit-receiver antenna pair of each carrier frequency. CSI helps WiFi achieve high throughput to meet the growing demands of wireless data traffic. CSI captures how wireless signals travel through the surrounding environment, so it can also be used for wireless sensing purposes. This dissertation …


Gpgpu Reliability Analysis: From Applications To Large Scale Systems, Bin Nie Jan 2019

Gpgpu Reliability Analysis: From Applications To Large Scale Systems, Bin Nie

Dissertations, Theses, and Masters Projects

Over the past decade, GPUs have become an integral part of mainstream high-performance computing (HPC) facilities. Since applications running on HPC systems are usually long-running, any error or failure could result in significant loss in scientific productivity and system resources. Even worse, since HPC systems face severe resilience challenges as progressing towards exascale computing, it is imperative to develop a better understanding of the reliability of GPUs. This dissertation fills this gap by providing an understanding of the effects of soft errors on the entire system and on specific applications. To understand system-level reliability, a large-scale study on GPU soft …