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Impacts And Uncertainties Of Climate Change On The Chesapeake Bay, Kyle E. Hinson Jan 2023

Impacts And Uncertainties Of Climate Change On The Chesapeake Bay, Kyle E. Hinson

Dissertations, Theses, and Masters Projects

Climate change impacts in the Chesapeake Bay will limit the efficacy of nutrient reduction efforts and decrease dissolved oxygen, but uncertainties associated with the magnitude of these effects remain. An understanding of underlying mechanisms that have driven recent warming trends will narrow uncertainties for future pathways of temperature change. Additionally, future simulations of climate impacts in the estuary are dependent on multiple different sources of uncertainty, many of which have not yet been fully evaluated. This dissertation used a three- dimensional coupled hydrodynamic-biogeochemical model to investigate recent warming trends as well as underlying uncertainties likely to influence regional projections of …


The Role Of Zooplankton Community Composition In Fecal Pellet Carbon Production In The York River Estuary, Chesapeake Bay, Kristen Nicole Sharpe Jan 2022

The Role Of Zooplankton Community Composition In Fecal Pellet Carbon Production In The York River Estuary, Chesapeake Bay, Kristen Nicole Sharpe

Dissertations, Theses, and Masters Projects

The biological pump is a critical component of carbon transformation in aquatic ecosystems, but the role that zooplankton play in carbon production and vertical export is rarely studied in estuaries. Zooplankton produce carbon-rich fecal pellets which sink to depth and can fuel benthic community metabolism. The body size and taxonomic structure of the zooplankton community varies on interannual, seasonal, and diel time scales, and can lead to varying carbon production and export rates. We quantified fecal pellet carbon (FPC) production by the whole mesozooplankton community (> 200 µm) in the York River, a sub-estuary of Chesapeake Bay. Biomass and taxonomic …


Diel, Seasonal, And Interannual Changes In Coastal Antarctic Zooplankton Community Composition And Trophic Ecology, John A. Conroy Jan 2022

Diel, Seasonal, And Interannual Changes In Coastal Antarctic Zooplankton Community Composition And Trophic Ecology, John A. Conroy

Dissertations, Theses, and Masters Projects

Throughout the ocean, zooplankton transfer energy from primary producers to higher predators and transport carbon from surface waters to depth. The efficiency of these processes depends in part upon the taxonomic composition and trophic ecology of the zooplankton community. Zooplankton species abundance and distribution shifted over recent decades along the West Antarctic Peninsula during a period of rapid regional warming and sea-ice decline. Although conducted within the context of long-term change, this dissertation research focuses on zooplankton dynamics at finer temporal scales that have received less attention. I analyzed depth-stratified net samples to investigate zooplankton diel vertical migration during Antarctic …


Estuarine Microbiomes And Biogeochemistry: Impacts Of Spatiotemporal Variation, Algal Blooms, And Microplastics, Samantha Grace Fortin Jul 2021

Estuarine Microbiomes And Biogeochemistry: Impacts Of Spatiotemporal Variation, Algal Blooms, And Microplastics, Samantha Grace Fortin

Dissertations, Theses, and Masters Projects

Estuaries are biogeochemical hotspots connecting terrestrial and coastal ecosystems. Anthropogenic disturbances, including increased nitrogen loading and plastic pollution, may have significant impacts on estuarine carbon and nitrogen cycling by altering microbiome structure and functions. The overarching goal of this dissertation was to examine how microbiomes and their associated biogeochemical processes are influenced by natural variation and anthropogenic disturbances in the York River Estuary (YRE). In chapter 2, spatial and temporal variation in benthic microbiomes and the rates of denitrification, anaerobic ammonium oxidation (anammox), and dissimilatory nitrate reduction to ammonium (DNRA) were examined to determine biotic and abiotic drivers of nitrogen …


Improving Observation, Assessment, And Management Of Atlantic Coastal Sharks, Cassidy Dawn Peterson Jan 2021

Improving Observation, Assessment, And Management Of Atlantic Coastal Sharks, Cassidy Dawn Peterson

Dissertations, Theses, and Masters Projects

Coastal sharks represent a group of stocks for which observation, assessment, and management are particularly challenging. Large distributional ranges, complex migratory behavior, low economic value, and relatively few observations in fishery independent surveys hinder relative abundance estimation. Assessing stock status of coastal sharks is encumbered by limited data availability, data quality, and knowledge of life history strategy. Further, coastal sharks are challenging to manage due to their slow intrinsic population growth rates, competing stakeholder interests, history of overexploitation, and in some cases, subjection to international exploitation. This dissertation aimed to improve the capacity to observe relative abundance of coastal sharks. …


Quantifying The Increased Resiliency Of Chesapeake Bay Hypoxia To Environmental Conditions: A Benefit Of Nutrient Reductions, Luke Thomas Frankel Jan 2021

Quantifying The Increased Resiliency Of Chesapeake Bay Hypoxia To Environmental Conditions: A Benefit Of Nutrient Reductions, Luke Thomas Frankel

Dissertations, Theses, and Masters Projects

Seasonal hypoxia is a characteristic feature of the Chesapeake Bay as a result of anthropogenic eutrophication from agriculture and urban development throughout the watershed. Although in recent years coordinated management efforts have successfully reduced the flux of nutrients into the Bay, the overall goal of sufficient oxygen concentrations below the pycnocline for living resources remains unfulfilled. This was particularly apparent in 2018 and 2019 when the volume of hypoxic water exceeded the long-term (35-year) average due to anomalously high riverine discharge. To quantify the impact of watershed nutrient reductions, conventional statistical methods were employed in concert with a 3-D numerical …


Recruitment And Post-Settlement Mortality Of The Soft-Shell Clam, Mya Arenaria, Shantelle Landry Jan 2021

Recruitment And Post-Settlement Mortality Of The Soft-Shell Clam, Mya Arenaria, Shantelle Landry

Dissertations, Theses, and Masters Projects

The soft-shell clam, Mya arenaria, is a benthic, filter-feeding, infaunal clam typically found in intertidal and shallow subtidal waters. Chesapeake Bay stocks of M. arenaria have been depleted since the 1960s due to various factors including predation, temperature, low recruitment, habitat loss, disease mortalities, and commercial harvest. As an important prey item for many commercial species, low abundances of these clams are mostly the result of the voracious appetite of the blue crab, Callinectes sapidus. In addition to predation, summer water temperatures in the Chesapeake Bay are likely driving the low abundances of M. arenaria, as water temperatures commonly surpass …


Dealing With Many Species: Improving Methodology For Forming And Assessing Species Complexes, Kristen Omori Jan 2021

Dealing With Many Species: Improving Methodology For Forming And Assessing Species Complexes, Kristen Omori

Dissertations, Theses, and Masters Projects

In the United States, the Magnuson-Stevens Reauthorization Act mandates that all federally fished species must have catch limits, which can be challenging for data-limited species. One approach is to assess and manage a group of species with similar life history characteristics, vulnerability to the fishery, and overlapping geographic distributions in a single management unit, or a complex (i.e., stock or species complex). Using the Gulf of Alaska (GOA) Other Rockfish complex as a case study, the main goals of this dissertation are five-fold: 1) review species complexes in the United States; 2) compare multivariate techniques for assigning species to complexes; …


Composition And Bioavailability Of Effluent Dissolved Organic Nitrogen, Quinn Nicole Roberts Jan 2020

Composition And Bioavailability Of Effluent Dissolved Organic Nitrogen, Quinn Nicole Roberts

Dissertations, Theses, and Masters Projects

Cultural eutrophication, the overproduction of phytoplankton biomass in response to increased nutrient inputs directly associated with human activities, is a major threat to the health of Chesapeake Bay. Strict regulations, which require a reduction in nutrient loading from all sources, have been a key component to restoration efforts. Water reclamation facilities (WRFs), which discharge effluent containing nitrogen (N) and other nutrients into receiving waters, have implemented upgrades in an effort to comply with regulations. These improvements have decreased the concentration of highly labile dissolved inorganic N (DIN), leaving behind significant concentrations of dissolved organic N (DON) whose bioavailability, and therefore …


Environmental Controls On Pteropod Ecology And Physiology Along The Western Antarctic Peninsula, Patricia Susan Thibodeau Jan 2020

Environmental Controls On Pteropod Ecology And Physiology Along The Western Antarctic Peninsula, Patricia Susan Thibodeau

Dissertations, Theses, and Masters Projects

Pteropods (pelagic snails) are ubiquitous zooplankton in the Southern Ocean and abundant along the Western Antarctic Peninsula (WAP), one of the most rapidly warming regions on the planet. They are important prey for higher trophic levels, grazers of phytoplankton, and contribute to particulate organic and inorganic carbon export. Pteropods are heralded as bioindicators of ecosystem health due to the vulnerability of their aragonitic shells under ocean acidification conditions, which could greatly affect their abundances in the future. Despite their importance within Antarctic food webs, few studies have analyzed the effects of climate change on pteropod physiology and biogeography in the …


Partitioning Of Hydrophobic Organic Contaminants And Microbial Communities On Microplastics, Kelley Ann Uhlig Jan 2019

Partitioning Of Hydrophobic Organic Contaminants And Microbial Communities On Microplastics, Kelley Ann Uhlig

Dissertations, Theses, and Masters Projects

Microplastic contamination of aquatic environments has only recently caught the attention of scientists, regulators and the public. Microplastics are typically more recalcitrant than naturally occurring polymers and so have the potential to cause a range of issues, including increased exposure of marine life to chemical contaminants sorbed to or leached from microplastics, negative impacts due to ingestion of microplastics by biota, and the potential to carry and transport pathogenic and invasive species long distances. Bio-based, bio-degradable polymers have begun to gain market share as an alternative to traditional petrochemical-based plastics, but not much is known about their impacts in marine …


Human Dimensions Of A Participatory, Collaborative Modeling Process - Oysterfutures, Taylor Dawn Goelz Jan 2019

Human Dimensions Of A Participatory, Collaborative Modeling Process - Oysterfutures, Taylor Dawn Goelz

Dissertations, Theses, and Masters Projects

Participatory, collaborative modeling processes represent a unique decision-making technique within natural resources management that allows for the combination of stakeholder involvement with the analytical and predictive power of scientific models. The continued use of participatory modeling within decision-making processes depends in part upon the willingness of stakeholders to participate. Continued participation of stakeholders is key to the persistence and overall success of these processes, and yet limited information exists concerning the impacts of these processes on participants. The consideration of human dimensions advances our understanding of the design and function of participatory modeling processes, including their ability to create consensus …


Assessing The Impact Of Land Use And Climate Change On Streamflow And Nutrient Delivery To The New River Estuary, Nc, Shanna Williamson Jan 2018

Assessing The Impact Of Land Use And Climate Change On Streamflow And Nutrient Delivery To The New River Estuary, Nc, Shanna Williamson

Dissertations, Theses, and Masters Projects

Freshwater inflow influences numerous physical, chemical, and biological characteristics of estuaries. The influx of freshwater to an estuary typically serves as an important source of allochthonous material from which primary producers derive their energy and transfer this energy to higher trophic levels. Any changes to freshwater flow subsequently impacts nutrient delivery and indirectly impacts organisms across multiple trophic levels. Anthropogenic changes to coastal land use and climate both act to threaten the integrity of estuarine systems by influencing freshwater inflow and dissolved nutrient input. Watershed loading models such as the Regional Nutrient Management (ReNuMa) model offer the ability to estimate …


Crab Larval Abundance And Settlement Patterns In A Changing Chesapeake Bay, Itchika Sivaipram Jan 2018

Crab Larval Abundance And Settlement Patterns In A Changing Chesapeake Bay, Itchika Sivaipram

Dissertations, Theses, and Masters Projects

All estuarine crabs have two larval stages, the zoea and the megalopa. Zoeae are entirely planktonic, whereas megalopae begin as plankton before beginning to search for settlement substrates as late stage megalopae. At both stages, crab larvae are subject to environmental conditions of the estuary. With changing environmental conditions due to anthropogenic activities and climate change, an understanding of how these planktonic larvae respond to environmental conditions is necessary for understanding subsequent larval supply to benthic populations and implication for fisheries management and habitat restoration. For this dissertation, I: 1) analyzed long-term timeseries in the lower Chesapeake Bay for spatial …


Impacts Of Atmospheric Nitrogen Deposition And Coastal Nitrogen Fluxes On Chesapeake Bay Hypoxia, Fei Da Jan 2018

Impacts Of Atmospheric Nitrogen Deposition And Coastal Nitrogen Fluxes On Chesapeake Bay Hypoxia, Fei Da

Dissertations, Theses, and Masters Projects

Although rivers are the primary source of dissolved inorganic nitrogen (DIN) inputs to the Chesapeake Bay, direct atmospheric DIN deposition and DIN fluxes from the continental shelf can also significantly impact Chesapeake Bay hypoxia. The relative role of these additional sources of DIN has not previously been thoroughly quantified. In this study, the three-dimensional Estuarine-Carbon-Biogeochemistry model embedded in the Regional Ocean Modeling System (ChesROMS-ECB) is used to examine the relative impact of these three DIN sources. Model simulations highlight that DIN inputs from the atmosphere have roughly the same impact on hypoxia as the same gram for gram change in …


Consumption Patterns Of Chesapeake Bay Fishes, Christopher James Sweetman Jan 2018

Consumption Patterns Of Chesapeake Bay Fishes, Christopher James Sweetman

Dissertations, Theses, and Masters Projects

As fisheries management moves away from single-species approaches and towards more holistic, ecosystem-based approaches, physiological and ecological interactions need to be explicitly considered and mechanistically understood. Accurate portrayals of food web interactions and the direction and magnitude of energy flow between predator and prey populations are fundamental components to further develop ecosystem-based fisheries management (EBFM). to bolster information that is required within an EBFM framework in the Chesapeake Bay, I conducted research designed to advance traditional dietary studies and better understand the form and structure within the Bay's food web. This research relied on controlled feeding experiments, comprehensive sampling of …


Improving Stock Assessments And Management Advice For Bluefin Tunas And Other Highly Migratory Species, Lisa Elma Ailloud Jan 2018

Improving Stock Assessments And Management Advice For Bluefin Tunas And Other Highly Migratory Species, Lisa Elma Ailloud

Dissertations, Theses, and Masters Projects

For years bluefin tuna has been the poster child for overfishing and poor management. However, recent improvements in data collection, catch monitoring and international cooperation are providing an opportunity to reverse the perception of a fishery that is doomed to collapse. Stock assessments are conducted routinely to monitor the abundance and productivity of exploited fish stocks so managers can determine how many fish can be sustainably harvested each year. Should a stock be declared overfished or under-going overfishing, the science behind stock assessments also equip managers with the knowledge necessary to make decisions about what short-term and long-term management measures …


Using High-Resolution Glider Data And Biogeochemical Modeling To Investigate Phytoplankton Variability In The Ross Sea, Daniel Edward Kaufman Jan 2017

Using High-Resolution Glider Data And Biogeochemical Modeling To Investigate Phytoplankton Variability In The Ross Sea, Daniel Edward Kaufman

Dissertations, Theses, and Masters Projects

As Earth’s climate changes, polar environments experience a disproportionate share of extreme shifts. Because the Ross Sea shelf has the highest annual productivity of any Antarctic continental shelf, this region is of particular interest when striving to characterize current and future changes in Antarctic systems. However, understanding of mesoscale variability of biogeochemical patterns in the Ross Sea and how this variability affects assemblage dynamics is incomplete. Furthermore, it is unknown how the Ross Sea may respond to projected warming, reduced summer sea ice concentrations, and shallower mixed layers during the next century. to investigate these dynamics and explore their consequences …


Ecosystem Services Of Restored Oyster Reefs In A Chesapeake Bay Tributary: Abundance And Foraging Of Estuarine Fishes, Bruce William Pfirrmann Jan 2017

Ecosystem Services Of Restored Oyster Reefs In A Chesapeake Bay Tributary: Abundance And Foraging Of Estuarine Fishes, Bruce William Pfirrmann

Dissertations, Theses, and Masters Projects

Oyster reef restoration may enhance the production of ecologically or economically important fish species, an ecosystem service, by providing refuge and foraging habitat. Predicting the effects of oyster habitat restoration on fisheries production in Chesapeake Bay requires a better understanding of fish habitat use, trophic dynamics, and the processes leading to production on a habitat-scale. The objective of this thesis was to evaluate the influence of restored subtidal oyster reefs on the abundance and foraging patterns of mobile estuarine fishes. Specifically, I compared the 1) abundance, 2) stomach fullness, 3) diet composition, and 4) daily consumption rate of fishes collected …


Modeling Phytoplankton Community Response To Nutrient Loading And Climate Change In A Shallow Temperate Estuary, Sara Aimee Blachman Jan 2016

Modeling Phytoplankton Community Response To Nutrient Loading And Climate Change In A Shallow Temperate Estuary, Sara Aimee Blachman

Dissertations, Theses, and Masters Projects

Phytoplankton account for at least half of all primary production in estuarine waters and are at the center of biogeochemical cycles and material budgets. Environmental managers use water column chlorophyll-a (chl-a) concentrations as a basic water quality indictor, as the problems of eutrophication and hypoxia are intrinsically linked to excessive phytoplankton growth. Evidence suggests that the distribution and frequency of harmful algal blooms may be increasing worldwide. For the most part, phytoplankton communities follow a standard seasonal pattern, with specific groups dominating the assemblage during the time of year when environmental conditions correspond to their requisites for growth. However, climate …


Zooplankton Community Composition And Grazing In The Amazon River Plume And Western Tropical North Atlantic Ocean, Brandon J. Conroy Jan 2016

Zooplankton Community Composition And Grazing In The Amazon River Plume And Western Tropical North Atlantic Ocean, Brandon J. Conroy

Dissertations, Theses, and Masters Projects

Large river plumes and frontal zones are important physical features influencing plankton distribution in the marine environment. In the western tropical North Atlantic Ocean (WTNA) the Amazon River plume may extend over an area reaching 1.5 x 106 km2. The freshwater plume creates a low-density lens in the surface 25m and supplies silicon and phosphorus to the WTNA. These physical and chemical gradients create an ideal environment for large-scale blooms of diatom diazotroph associations (DDAs), a symbiotic relationship between nitrogen-fixing cyanobacteria and chain-forming diatoms. While the physical and chemical properties of the plume with regard to influences on phytoplankton have …


Population Dynamics Of Gelatinous Zooplankton In The Chesapeake Bay And Sargasso Sea, And Effects On Carbon Export, Joshua Paul Stone Jan 2016

Population Dynamics Of Gelatinous Zooplankton In The Chesapeake Bay And Sargasso Sea, And Effects On Carbon Export, Joshua Paul Stone

Dissertations, Theses, and Masters Projects

Gelatinous zooplankton (GZ; cnidarians, ctenophores, and pelagic tunicates) periodically are the dominant members of the zooplankton throughout the majority of the world’s oceans. their unique body plans and life cycles allow them to rapidly take advantage of favorable environmental conditions, which has far-ranging consequences for food web dynamics and biogeochemical cycles. GZ populations have been speculated to respond to anthropogenic changes, but few long-term studies exist to test this hypothesis and even fewer have examined the consequent effects on carbon export. I analyzed two long-term time series in the Chesapeake Bay and one in the Sargasso Sea for annual and …


Influence Of Structural Complexity And Location On The Habitat Value Of Restored Oyster Reefs, Melissa Ann Karp Jan 2016

Influence Of Structural Complexity And Location On The Habitat Value Of Restored Oyster Reefs, Melissa Ann Karp

Dissertations, Theses, and Masters Projects

In the Chesapeake Bay, < 1% of the historic oyster population remains, and efforts have been increasing to restore oysters and the services they provide. Building reefs that successfully provide ecosystem services–especially habitat and foraging grounds–may require different restoration techniques than those previously used, and success may depend on reef morphology (complexity), location, and environmental conditions. Salinity and habitat complexity are two important factors that may interact to effect benthic communities and predator-prey interactions on restored reefs. The goals of this project were: (1) Characterize the benthic communities on restored oyster reefs in lower Chesapeake Bay, and (2) examine the effects of structural complexity and salinity on benthic communities and predator-prey interactions. A two-year field survey of restored reefs was carried out in four rivers in lower Chesapeake Bay to characterize faunal communities on restored reefs and to quantify the effect of reef complexity on faunal communities. A laboratory mesocosm experiment was conducted to examine the effect of reef complexity on predator foraging. In total, 61 macrofaunal species were identified among all samples, and restored reefs supported on average, 6,169 org/m2 and 67.88 g-AFDW/m2. There were significant differences in the community composition and diversity among the rivers, and salinity was the environmental factor that best explained the observed differences in species composition across the rivers. Salinity and rugosity (i.e., structural complexity) both positively affected diversity, while salinity negatively affected macrofaunal abundance and biomass. Oyster density and rugosity positively affected macrofaunal biomass, and oyster density positively affected mud crab, polychaete, and mussel densities. In the mesocosm experiment, predator foraging, measured by proportion and number of prey consumed, was significantly reduced in the presence of oyster shell structure. However, predators were able to consume more prey when prey density was increased, even in the presence of oyster shell structure. These results combine to enhance our understanding of the benefits of increased habitat complexity for both prey and predators on restored oyster reefs. Increasing complexity worked to increase the abundance, biomass, and diversity of organisms inhabiting restored reefs, and even though predator consumption was reduced in the presence of structure compared to non-structured habitat, predators were able to consume more prey individuals when prey density was increased. Therefore, increasing the structure of oyster reef habitat may benefit prey species by providing refuge habitat, and benefit predators by providing an increased abundance of available prey items.


Influence Of Perkinsus Marinus Infection And Oyster Health On Levels Of Human-Pathogenic Vibrios In Oysters, Lydia M. Bienlien Jan 2016

Influence Of Perkinsus Marinus Infection And Oyster Health On Levels Of Human-Pathogenic Vibrios In Oysters, Lydia M. Bienlien

Dissertations, Theses, and Masters Projects

The eastern oyster Crassostrea virginica is an ecologically and commercially important species whose natural populations have been devastated by overharvesting, habitat destruction, and disease, but the rapid growth of oyster aquaculture has shown potential to restore the economic significance of this species. A key threat to the growth and sustainability of oyster aquaculture is the association of human-pathogenic Vibrio bacteria with product marketed for raw consumption. Two Vibrio species, Vibrio vulnificus and Vibrio parahaemolyticus, are the causes of the highest rates of seafood consumption-related mortality and gastrointestinal illness, respectively. Identification of the factors influencing V. vulnificus and V. parahaemolyticus prevalence …


The Effects Of Drifting Fish Aggregating Devices On Bycatch In The Tropical Tuna Purse Seine Fisheries In The Atlantic And Indian Oceans, Julia Snouck-Hurgronje Jan 2016

The Effects Of Drifting Fish Aggregating Devices On Bycatch In The Tropical Tuna Purse Seine Fisheries In The Atlantic And Indian Oceans, Julia Snouck-Hurgronje

Dissertations, Theses, and Masters Projects

Thousands of floating objects, known as drifting fish aggregating devices (dFADs), are released every year by commercial tropical tuna purse seine vessels in the three equatorial oceans to aggregate tuna and increase catch. The escalation in the number of dFADs deployed over the last three decades has caused changes in fishing effort that are poorly reflected in traditional indices of purse seine effort and catch per unit of effort (CPUE). In addition, concerns have been raised regarding the impacts of such high numbers of dFADs being deployed on both catch and bycatch species. I studied two aspects of dFAD deployments …


Biogeochemistry Of Redox-Sensitive Elements In The Subterranean Estuary, Alison E. O'Connor Jan 2016

Biogeochemistry Of Redox-Sensitive Elements In The Subterranean Estuary, Alison E. O'Connor

Dissertations, Theses, and Masters Projects

Submarine groundwater discharge (SGD) is any flow of water along the continental margins from the seabed into the coastal ocean, and it represents an important source of nutrients and trace metals to the coastal ocean. The chemical composition of SGD is strongly influenced by biogeochemical reactions that take place within the subterranean estuary (STE), the subsurface mixing zone of fresh and saline waters. Understanding the reactions that take place within the shallow STE is critical to evaluating the composition of SGD, and therefore SGD-driven chemical fluxes. In this dissertation, I seek to determine the biogeochemical processes controlling the behavior of …


Patterns Of Abundance And Community Dynamics In Atlantic Coastal Sharks, Cassidy Peterson Jan 2016

Patterns Of Abundance And Community Dynamics In Atlantic Coastal Sharks, Cassidy Peterson

Dissertations, Theses, and Masters Projects

No abstract provided.


Oyster Reef Connectivity Inferred Via Population Genetic Analysis, Brendan Douglas Turley Jan 2015

Oyster Reef Connectivity Inferred Via Population Genetic Analysis, Brendan Douglas Turley

Dissertations, Theses, and Masters Projects

A panel of 48 single nucleotide polymorphism markers (SNPs) was developed for use in a population genetic analysis of the Eastern Oyster Crassostrea virginica sampled from the lower Chesapeake Bay. The SNPs were developed from published and unpublished sequencing data and developed to be used on a Fluidigm Biomark. A selection of 95 SNPs were chosen initially for development and the best 48 were selected for downstream applications. This project was a collaboration with the non-profit Chesapeake Bay Foundation (CBF) to examine their oyster reef restoration project in the Lafayette River, Virginia. The CBF wanted to test a hydrodynamic connectivity …


A Model Of Carrying Capacity And Ecosystem Impacts In A Large-Scale, Bivalve-Dominated Agro-Ecosystem: Hard Clam Aquaculture In Cherrystone Inlet, Va, Michael A. Kuschner Jan 2015

A Model Of Carrying Capacity And Ecosystem Impacts In A Large-Scale, Bivalve-Dominated Agro-Ecosystem: Hard Clam Aquaculture In Cherrystone Inlet, Va, Michael A. Kuschner

Dissertations, Theses, and Masters Projects

With the recent growth of the hard clam aquaculture industry, sites of intensive aquaculture have emerged as large-scale agro-ecosystems where the success of aquaculture production is dynamically linked to ecosystem function. Large scale clam aquaculture operations are associated with a range of potential positive and negative feedbacks related to nutrient dynamics, water and sediment quality, proliferation of macroalgae, and carrying capacity. Quantitative modeling tools are needed to support system-level planning related to site selection, scale of operations, production capacity and ecosystem function. The purpose of this study was to develop a model for Cherrystone Inlet, VA, where one-third (1.9 km2) …


The Influence Of Short-Term Events On The Hydrographic And Biological Structure Of The Southwestern Ross Sea, Randolph M. Jones Jan 2015

The Influence Of Short-Term Events On The Hydrographic And Biological Structure Of The Southwestern Ross Sea, Randolph M. Jones

Dissertations, Theses, and Masters Projects

Relative to the rest of the Southern Ocean, the Ross Sea continental shelf experiences very high productivity and phytoplankton biomass, which supports an extensive food web including high concentrations of upper trophic level biomass. Conventional observational methods, including ship-based sampling, instrumented moorings, satellite imagery, and computer-based modelling, have illustrated the seasonal progression of the phytoplankton bloom over the past four decades. While we have been sampling phytoplankton variability in the Ross Sea on a variety of relatively large scales, with observations at specific locations or times, over spans of time, or at specific depths, our understanding of smaller scales of …