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Physical Sciences and Mathematics Commons™

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Brigham Young University

2014

Articles 1 - 30 of 84

Full-Text Articles in Physical Sciences and Mathematics

Replication And Knowledge Production In Empirical Software Engineering Research, Jonathan L. Krein Dec 2014

Replication And Knowledge Production In Empirical Software Engineering Research, Jonathan L. Krein

Theses and Dissertations

Although replication is considered an indispensable part of the scientific method in software engineering, few replication studies are published each year. The rate of replication, however, is not surprising given that replication theory in software engineering is immature. Not only are replication taxonomies varied and difficult to reconcile, but opinions on the role of replication contradict. In general, we have no clear sense of how to build knowledge via replication, particularly given the practical realities of our research field. Consequently, most replications in software engineering yield little useful information. In particular, the vast majority of external replications (i.e., replications performed …

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Classifying And Cataloging Cyber-Security Incidents Within Cyber-Physical Systems, William B. Miller Dec 2014

Classifying And Cataloging Cyber-Security Incidents Within Cyber-Physical Systems, William B. Miller

Theses and Dissertations

In the past, there were perceived delineations between the cyber world and the physical world. We are becoming increasingly aware of the overlap between these two worlds, and the overlap itself is increasing. The overlap between these two worlds is known as cyber-physical systems. There have been several incidents involving cyber-physical systems and the number of these incidents is increasing dramatically. In the past there has been no effort to identify methods for describing these incidents in the unique context of cyber-physical systems. This research provides a taxonomy for classifying these incidents that focuses on cross domain, impact oriented analysis. …

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The Bioluminescence Heterozygous Genome Assembler, Jared Calvin Price Dec 2014

The Bioluminescence Heterozygous Genome Assembler, Jared Calvin Price

Theses and Dissertations

High-throughput DNA sequencing technologies are currently revolutionizing the fields of biology and medicine by elucidating the structure and function of the components of life. Modern DNA sequencing machines typically produce relatively short reads of DNA which are then assembled by software in an attempt to produce a representation of the entire genome. Due to the complex structure of all but the smallest genomes, especially the abundant presence of exact or almost exact repeats, all genome assemblers introduce errors into the final sequence and output a relatively large set of contigs instead of full-length chromosomes (a contig is a DNA sequence …

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The 1852 Banda Arc Mega-Thrust Earthquake And Tsunami In Indonesia, Tsz Man Fisher Dec 2014

The 1852 Banda Arc Mega-Thrust Earthquake And Tsunami In Indonesia, Tsz Man Fisher

Theses and Dissertations

In 1852, a five-minute long earthquake hit the Banda Arc region that was felt over most of Indonesia. It caused uplift of new islands and sent a tsunami across the Banda Sea that reached a height of 8 meters at Banda Neira and was also registered at Ambon, Saparua and other islands. Records of the 1852 earthquake at multiple locations provide the constraints needed to reconstruct the disastrous event through earthquake intensity analysis and numerical modeling of the tsunami. Using tsunami heights and arrival times as the major constraints, best fit numerical models of the tsunami were constructed using Clawpack. …

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Fabrication, Characterization, Optimization And Application Development Of Novel Thin-Layer Chromatography Plates, Supriya Singh Kanyal Dec 2014

Fabrication, Characterization, Optimization And Application Development Of Novel Thin-Layer Chromatography Plates, Supriya Singh Kanyal

Theses and Dissertations

This dissertation describes advances in the microfabrication of thin layer chromatography (TLC) plates. These plates are prepared by the patterning of carbon nanotube (CNT) forests on substrates, followed by their infiltration with an inorganic material. This document is divided into ten sections or chapters. Chapter 1 reviews the basics of conventional TLC technology. This technology has not changed substantially in decades. This chapter also mentions some of the downsides of the conventional approach, which include unwanted interactions of the binder in the plates with the analytes, relatively slow development times, and only moderately high efficiencies. Chapter 2 focuses primarily on …

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Synthesis And Characterization Of Complex Molecular Assemblies On Surfaces, Nitesh Madaan Dec 2014

Synthesis And Characterization Of Complex Molecular Assemblies On Surfaces, Nitesh Madaan

Theses and Dissertations

The research presented in this dissertation is focused on the construction of complex molecular structures on planar gold and silicon dioxide surfaces using a variety of surface modification techniques, along with thorough surface characterization at each modification step. The dissertation is structured into six separate chapters. In Chapter 1, an introduction to the importance and implications of molecular level surface modification, commonly employed surface modification methods, and available surface characterization techniques is presented. Chapter 2 shows applications of novel methodologies for the functionalization of gold surfaces using alkane dithiol self-assembled monolayers and thiol-ene click chemistry. The resulting functionalized gold substrates …

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Algebraic Semi-Classical Model For Reaction Dynamics, Tim Glenn Wendler Dec 2014

Algebraic Semi-Classical Model For Reaction Dynamics, Tim Glenn Wendler

Theses and Dissertations

We use an algebraic method to model the molecular collision dynamics of a collinear triatomic system. Beginning with a forced oscillator, we develop a mathematical framework upon which inelastic and reactive collisions are modeled. The model is considered algebraic because it takes advantage of the properties of a Lie algebra in the derivation of a time-evolution operator. The time-evolution operator is shown to generate both phase-space and quantum dynamics of a forced oscillator simultaneously. The model is considered semi-classical because only the molecule's internal degrees-of-freedom are quantized. The relative translation between the colliding atom and molecule in an exchange reaction …

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Teachers' Curricular Reasoning And Mkt In The Context Of Algebra And Statistics, Kolby J. Gadd Dec 2014

Teachers' Curricular Reasoning And Mkt In The Context Of Algebra And Statistics, Kolby J. Gadd

Theses and Dissertations

This study investigates 7th grade teachers' curricular reasoning and MKT in algebra and statistics. Although the use of curriculum materials and MKT both influence the quality of mathematics instruction, no relationship between teachers' curricular reasoning and MKT was found. Further, teachers' curricular reasoning across algebra and statistics was very similar despite differences in these fields and differences in MKT. A model for thinking about the knowledge needed to provide high quality instruction is proposed by considering the role of curricular reasoning and MKT in instruction.

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Framework To Implement Authentication, Authorization And Secure Communications In A Multiuser Collaborative Cax Environment, Francis Mensah Dec 2014

Framework To Implement Authentication, Authorization And Secure Communications In A Multiuser Collaborative Cax Environment, Francis Mensah

Theses and Dissertations

Computer Aided Design (CAD) applications have historically been based on a single user per application architecture. Although this architecture is still popular to date, it does have several drawbacks. First of all the single user CAD architecture inhibits a concurrent engineering design process where several designers can work on the same model simultaneously. This limitation introduces time inefficiency especially when a project involves geographically dispersed designers. A solution to these drawbacks could be a transition from the traditional single user CAD architecture to a multiuser collaborative architecture. Advances in computer networking technologies, especially relating to the Internet, have provided the …

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A Covering System With Minimum Modulus 42, Tyler Owens Dec 2014

A Covering System With Minimum Modulus 42, Tyler Owens

Theses and Dissertations

We construct a covering system whose minimum modulus is 42. This improves the previous record of 40 by P. Nielsen.

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The Existence Of A Discontinuous Homomorphism Requires A Strong Axiom Of Choice, Michael Steven Andersen Dec 2014

The Existence Of A Discontinuous Homomorphism Requires A Strong Axiom Of Choice, Michael Steven Andersen

Theses and Dissertations

Conner and Spencer used ultrafilters to construct homomorphisms between fundamental groups that could not be induced by continuous functions between the underlying spaces. We use methods from Shelah and Pawlikowski to prove that Conner and Spencer could not have constructed these homomorphisms with a weak version of the Axiom of Choice. This led us to define and examine a class of pathological objects that cannot be constructed without a strong version of the Axiom of Choice, which we call the class of inscrutable objects. Objects that do not need a strong version of the Axiom of Choice are scrutable. We …

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Microchip Thermal Gradient Gas Chromatography, Anzi Wang Dec 2014

Microchip Thermal Gradient Gas Chromatography, Anzi Wang

Theses and Dissertations

Although the airbath oven is a reliable heating method for gas chromatography (GC), resistive heating is needed for higher analytical throughput and on-site chemical analysis because of size, heating rate and power requirements. In the last thirty years, a variety of resistive heating methods were developed and implemented for both benchtop and portable GC systems. Although fast heating rates and low power consumption have been achieved, losses in column efficiency and resolution, complex construction processes and difficulties experienced in recovering damaged columns have also become problematic for routine use of resistively heated columns. To solve these problems, a new resistively …

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Pro-Covering Fibrations Of The Hawaiian Earring, Nickolas Brenten Callor Dec 2014

Pro-Covering Fibrations Of The Hawaiian Earring, Nickolas Brenten Callor

Theses and Dissertations

Let H be the Hawaiian Earring, and let H denote its fundamental group. Assume (Bi) is an inverse system of bouquets of circles whose inverse limit is H. We give an explicit bijection between finite normal covering spaces of H and finite normal covering spaces of Bi. This bijection induces a correspondence between a certain family of inverse sequences of these covering spaces. The correspondence preserves the inverse limit of these sequences, thus offering two methods of constructing the same limit. Finally, we characterize all spaces that can be obtained in this fashion as a particular type of fibrations of …

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Normal Fault Block Or Giant Landslide? Baldy Block, Wasatch Range, Utah, Eric R. Meyer Dec 2014

Normal Fault Block Or Giant Landslide? Baldy Block, Wasatch Range, Utah, Eric R. Meyer

Theses and Dissertations

Understanding the interplay between surficial and tectonic processes in the development of Utah's Wasatch Range is vital to evaluating geologic hazards along the Wasatch Front. Baldy is a large (6.125 km3) block of limestone and sandstone structurally overlying shale on the western flank of Mount Timpanogos. It has been mapped as a downdropped normal fault block of Permian units, but no other trace of such a fault exists along the range. The Baldy block structurally overlies the weak Manning Canyon shale, which has produced a regional geomorphology replete with faceted spurs, landslide scarps and deposits. Structural, bio- and litho-stratigrahic mapping …

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Chaperone-Mediated Folding And Assembly Of Β-Propeller Proteins Into Cellular Signaling Complexes, Rebecca L. Plimpton Dec 2014

Chaperone-Mediated Folding And Assembly Of Β-Propeller Proteins Into Cellular Signaling Complexes, Rebecca L. Plimpton

Theses and Dissertations

G protein signaling depends on the ability of the individual subunits of the G protein heterotrimer to assemble into a functional complex. Formation of the G protein βγ (Gβγ) dimer is particularly challenging because it is an obligate dimer in which the individual subunits are unstable on their own. Recent studies have revealed an intricate chaperone system that brings the Gβ and Gγ subunits together. This system includes the cytosolic chaperonin containing TCP-1 (CCT) and a co-chaperone phosducin-like protein 1 (PhLP1). Two key intermediates in the Gβγ assembly process, the Gβ-CCT and the PhLP1-Gβ-CCT complexes, were isolated and their structures …

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Compositional Analysis Of Three Clay Artifact Collections From The Southwestern United States, Kathleen R. Kirkham Dec 2014

Compositional Analysis Of Three Clay Artifact Collections From The Southwestern United States, Kathleen R. Kirkham

Theses and Dissertations

This study assessed ways compositional analysis, facilitated by portable X-ray fluorescence technology (PXRF), can be applied in the museum setting to resolve provenance issues and other collections management questions. A major segment of the study evaluated PXRF as a non-invasive geochemical analysis technique to address concerns about whether the resolution of results is sufficient to draw meaningful conclusions. Compositional analysis, mainly facilitated by PXRF, was successfully applied to three clay artifact collections from the southwestern United States. Pottery sherds from Fourmile Ruin were analyzed using PXRF and compared to analyses from invasive wavelength-dispersive XRF and X-ray diffraction techniques. Expanding the …

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A Privacy Risk Scoring Framework For Mobile, Jedidiah Spencer Montgomery Nov 2014

A Privacy Risk Scoring Framework For Mobile, Jedidiah Spencer Montgomery

Theses and Dissertations

Protecting personal privacy has become an increasingly important issue as computers become a more integral part of everyday life. As people begin to trust more personal information to be contained in computers they will question if that information is safe from unwanted intrusion and access. With the rise of mobile devices (e.g., smartphones, tablets, wearable technology) users have enjoyed the convenience and availability of stored personal information in mobile devices, both in the operating system and within applications.For a mobile application to function correctly it needs permission or privileges to access and control various resources and controls on the mobile …

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The Nature And Origin Of Pebble Dikes And Associated Alteration: Tintic Mining District (Ag-Pb-Zn), Utah, Douglas M. Johnson Nov 2014

The Nature And Origin Of Pebble Dikes And Associated Alteration: Tintic Mining District (Ag-Pb-Zn), Utah, Douglas M. Johnson

Theses and Dissertations

In many ore deposits throughout the world, brecciation often accompanies or occurs in association with mineralization (Sillitoe, 1985). Such is the case in the Tintic Mining District (Ag-Pb-Zn) of north-central Utah, where unique breccia features called pebble dikes occur alongside significant mineralization. Pebble dikes are tabular bodies of breccia, which consist of angular to rounded clasts of quartzite, shale, carbonate, and minor igneous rock cemented in a fine-grained clastic matrix. All clasts now lie above or adjacent to corresponding source rocks. Dikes are thin, typically less than 0.3 m wide to as much as 1 m, and can exceed 100 …

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Scalable Detection And Extraction Of Data In Lists In Ocred Text For Ontology Population Using Semi-Supervised And Unsupervised Active Wrapper Induction, Thomas L. Packer Oct 2014

Scalable Detection And Extraction Of Data In Lists In Ocred Text For Ontology Population Using Semi-Supervised And Unsupervised Active Wrapper Induction, Thomas L. Packer

Theses and Dissertations

Lists of records in machine-printed documents contain much useful information. As one example, the thousands of family history books scanned, OCRed, and placed on-line by FamilySearch.org probably contain hundreds of millions of fact assertions about people, places, family relationships, and life events. Data like this cannot be fully utilized until a person or process locates the data in the document text, extracts it, and structures it with respect to an ontology or database schema. Yet, in the family history industry and other industries, data in lists goes largely unused because no known approach adequately addresses all of the costs, challenges, …

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Measuring Human Workload In Unmanned Aerial Vehicles, Timothy J. Gledhill Sep 2014

Measuring Human Workload In Unmanned Aerial Vehicles, Timothy J. Gledhill

Theses and Dissertations

Unmanned aerial systems (UASs) often require multiple human operators fulfilling diverse roles for safe and correct operation. Reliably designing the human interaction, autonomy, and decision making aspects of these systems requires the use of modeling. We propose a conceptual model that models human machine interaction systems as a group of actors connected by a network of communication channels. We present a simulation framework implemented in Java, with an optional XML model parser that can be analyzed using the Java Pathfinder (JPF) model checker. We propose two human workload metrics based on a taxonomy extracted from the relevant literature. Using the …

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Intelligent Indexing: A Semi-Automated, Trainable System For Field Labeling, Robert T. Clawson Sep 2014

Intelligent Indexing: A Semi-Automated, Trainable System For Field Labeling, Robert T. Clawson

Theses and Dissertations

We present Intelligent Indexing: a general, scalable, collaborative approach to indexing and transcription of non-machine-readable documents that exploits visual consensus and group labeling while harnessing human recognition and domain expertise. In our system, indexers work directly on the page, and with minimal context switching can navigate the page, enter labels, and interact with the recognition engine. Interaction with the recognition engine occurs through preview windows that allow the indexer to quickly verify and correct recommendations. This interaction is far superior to conventional, tedious, inefficient post-correction and editing. Intelligent Indexing is a trainable system that improves over time and can provide …

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Ion Structure And Energetics In The Gas Phase Characterized Using Fourier Transfom Ion Cyclotron Resonance Mass Spectrometry, Chad A. Jones Sep 2014

Ion Structure And Energetics In The Gas Phase Characterized Using Fourier Transfom Ion Cyclotron Resonance Mass Spectrometry, Chad A. Jones

Theses and Dissertations

In this dissertation, I use Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) to study the structure and energetics of gas phase ions. Infrared multiphoton dissociation spectroscopy (IRMPD) is a technique for measuring the IR spectrum of gas phase ions in a Penning trap. I use this technique to investigate the conformation of cucurbituril complexes, terminal diamines, and protonated amino acids. Cross sectional areas by Fourier transform ion cyclotron resonance mass spectrometry (CRAFTI) is a technique developed by the Dearden lab to measure the cross section of gas phase ions. In this work, I further develop a fundamental understanding of …

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Simple, Label-Free And Non-Instrumented Analyte Quantitation By Flow Distance Measurement In Microfluidic Devices, Debolina Chatterjee Aug 2014

Simple, Label-Free And Non-Instrumented Analyte Quantitation By Flow Distance Measurement In Microfluidic Devices, Debolina Chatterjee

Theses and Dissertations

Rapid determination of the concentrations of molecules related to diseases can provide timely information for treatment options. However, most biomarker quantitation methods require costly and complex equipment. On the other hand, point-of-care systems have less complex instrumentation needs than laboratory-based equipment, but often provide less information; for example, biomarker presence or absence instead of concentration. A complete analysis setup addressing key limitations of both laboratory-based and portable systems is highly desirable. I developed microfluidic devices with visual inspection readout of a target’s concentration from microliter volumes of solution flowed into a microchannel. Microchannels are formed within polydimethylsiloxane (PDMS), and the …

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Browser-Based Manual Encryption, Yuanzheng Song Aug 2014

Browser-Based Manual Encryption, Yuanzheng Song

Theses and Dissertations

Billions of web-based email and chat messages are sent over the Internet every day. However, very few service providers support end-to-end privacy protection. While providing security for these messages is technically feasible, usability remains a challenge in this field. Recent research attempts to hide security details like key management and encryption in order to make the system more usable. However usability studies demonstrated that hiding these details may confuse the user and contribute to mistakes (e.g., sending out an email in plaintext when the user thought it would be encrypted). In an effort to increase trust and eliminate mistakes, this …

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Communicating Affective Meaning From Software To Wetware Through The Medium Of Digital Art, R David Norton Aug 2014

Communicating Affective Meaning From Software To Wetware Through The Medium Of Digital Art, R David Norton

Theses and Dissertations

Computational creativity is a new and developing field of artificial intelligence concerned with computational systems that either autonomously produce original and functional products, or that augment the ability of humans to do so. As the role of computers in our daily lives is continuing to expand, the need for such systems is becoming increasingly important. We introduce and document the development of a new “creative” system, called DARCI (Digital ARtist Communicating Intention), that is designed to autonomously create novel artistic images that convey linguistic concepts to the viewer. Within the scope of this work, the system becomes capable of creating …

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Build-And-Fill Development Of Lower Ismay (Middle Pennsylvanian Paradox Formation) Phylloid-Algal Mounds Of The Paradox Basin, Southeastern Utah, Lincoln H. Reed Aug 2014

Build-And-Fill Development Of Lower Ismay (Middle Pennsylvanian Paradox Formation) Phylloid-Algal Mounds Of The Paradox Basin, Southeastern Utah, Lincoln H. Reed

Theses and Dissertations

Phylloid-algal mounds form heterogeneous hydrocarbon reservoirs in the southeastern portion (Blanding sub-basin) of the Paradox Basin. Well-studied Lower Ismay mounds exposed along walls of the San Juan River gorge in the vicinity of Eight Foot Rapids, the west limb of the Raplee Anticline, and at the classic Honaker Trail locality (southwestern Paradox Basin) have often been cited as outcrop analogs of productive subsurface mounds. Until now, however, there has not been a complete description of the distribution, size, and spacing of outcropping algal mounds at the classic Eight Foot Rapids locality. The Lower Ismay sequence was analyzed in the context …

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Synthesis Of 4'-Ester Resveratrol Analogues, Chromium Trioxide Oxidation Of Terpenes, And Synthesis Of Mimics Of (-)-Englerin A, Mark Jeffrey Acerson Aug 2014

Synthesis Of 4'-Ester Resveratrol Analogues, Chromium Trioxide Oxidation Of Terpenes, And Synthesis Of Mimics Of (-)-Englerin A, Mark Jeffrey Acerson

Theses and Dissertations

4’ -ester analogues of resveratrol were synthesized using reaction conditions developed to produce mono-ester products in the presence of two other unprotected phenols. Basic conditions were employed to deprotonate the most acidic 4’ phenol followed by addition of anhydrides or acid chlorides to give the ester product. The reaction favored 4’-ester formation in polar aprotic solvents with DMSO being the optimal solvent.

(—)-Englerin A is a guaiane-type sesquiterpene containing two ester side chains. Mimics of (—)-englerin A were proposed that retained the ester side chains while replacing the non-polar core with less complicated structures. These proposed mimic cores would maintain …

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High-Performance Polymer Monoliths For Capillary Liquid Chromatography, Pankaj Aggarwal Jul 2014

High-Performance Polymer Monoliths For Capillary Liquid Chromatography, Pankaj Aggarwal

Theses and Dissertations

This dissertation focuses on improving the chromatographic efficiency of polymeric organic monoliths by characterizing and optimizing the bed morphology. In-situ characterization techniques such as capillary flow porometry (CFP), 3-dimensional scanning electron microscopy (3D SEM) and conductivity measurements were developed and implemented to quantitatively characterize the morphology of poly(ethylene glycol) diacrylate (PEGDA) monoliths. The CFP measurements for monoliths prepared by the same procedure in capillaries with different diameters (i.e., 75, 150, and 250 μm) clearly showed a change in average through-pore size with capillary diameter, thus, certifying the need for in-situ measurement techniques. Serial sectioning and imaging of PEGDA monoliths using …

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Transposing Noninvertible Polynomials, Nathan Cordner Jul 2014

Transposing Noninvertible Polynomials, Nathan Cordner

Library Research Grants

In the class of invertible polynomials, the notion of dual polynomials W and WT, as well as dual groups G and GT is well-understood. In this paper we investigate finding dual pairs W and WT for noninvertible polynomials. We find that in many instances, our intuition that stems from invertible polynomials does not extend to the noninvertible case.

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Using A Model Of Temporal Latency To Improve Supervisory Control Of Human-Robot Teams, Kyle Lee Blatter Jul 2014

Using A Model Of Temporal Latency To Improve Supervisory Control Of Human-Robot Teams, Kyle Lee Blatter

Theses and Dissertations

When humans and remote robots work together on a team, the robots always interact with a human supervisor, even if the interaction is limited to occasional reports. Distracting a human with robotic interactions doesn't pose a problem so long as the inclusion of robots increases the team's overall effectiveness. Unfortunately, increasing the supervisor's cognitive load may decrease the team's sustainable performance to the point where robotic agents are more a liability than an asset. Present approaches resolve this problem with adaptive autonomy, where a robot changes its level of autonomy based on the supervisor's cognitive load. This thesis proposes to …

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