Physical Sciences and Mathematics Commons^™

Aspects Of Stochastic Geometric Mechanics In Molecular Biophysics, David Frost

All Dissertations

In confocal single-molecule FRET experiments, the joint distribution of FRET efficiency and donor lifetime distribution can reveal underlying molecular conformational dynamics via deviation from their theoretical Forster relationship. This shift is referred to as a dynamic shift. In this study, we investigate the influence of the free energy landscape in protein conformational dynamics on the dynamic shift by simulation of the associated continuum reaction coordinate Langevin dynamics, yielding a deeper understanding of the dynamic and structural information in the joint FRET efficiency and donor lifetime distribution. We develop novel Langevin models for the dye linker dynamics, including rotational dynamics, based …

Divisibility Probabilities For Products Of Randomly Chosen Integers, Noah Y. Fine

Rose-Hulman Undergraduate Mathematics Journal

We find a formula for the probability that the product of n positive integers, chosen at random, is divisible by some integer d. We do this via an inductive application of the Chinese Remainder Theorem, generating functions, and several other combinatorial arguments. Additionally, we apply this formula to find a unique, but slow, probabilistic primality test.

Tardys Quantifiers: Extracting Temporal And Reversible Dynamical Symmetries, Nhat Vu Minh Nguyen, Arjendu K. Pattanayak, Andres Aragoneses

2023 Symposium

One of the great challenges in complex and chaotic dynamics is to reveal the details of its underlying determinism. This can be manifest in the form of temporal correlations or structured patterns in the dynamics of a measurable variable. These temporal dynamical structures are sometimes a consequence of hidden global symmetries. Here we identify the temporal (approximate) symmetries of a semiconductor laser with external optical feedback, based on which we define the Temporal And Reversible DYnamical Symmetry (TARDYS) quantifiers to evaluate the relevance of specific temporal correlations in a time series. We show that these symmetries are also present in …

The Use Of Probability In Quantum Mechanics To Calculate Measurement Outcomes, Hannah E. Collins

CAFE Symposium 2023

The concept of probability can help measure some of the possible outcomes of different experiments in the field of quantum mechanics. Those experiments include Thomas Young's double slit experiment, the Schrödinger equation, the wave function, and the Born Rule, which all make use of probability to predict the placement of certain subatomic particles including photons of light, in the experiments. In this project, the manner in which probability does this is explored in depth.

The Probability Of Miracles, Lewis A. Pummell

CAFE Symposium 2023

An insight into the probability that we will experience a miracle within our lives. This project considers different ways of defining a miracle, and how this impacts how we consider them in our lives. They are paradoxical, and completely subjective - although there are key concepts of probability which will guide opinion.

Looking For Life, Conor C. Grubb

CAFE Symposium 2023

The topic of aliens is not just about conspiracy theories and tinfoil hats, through the years numerous respected scientists have weighed in and put thought into the topic. The Search for Extraterrestrial Intelligence (SETI) is closely tied to the Fermi Paradox and the Drake Equation. The Fermi Paradox considers why humans haven't already interacted with aliens if they exist, and the Drake Equation outlines potential variables that would influence the chances of humanity receiving radio contact from an alien civilization.

(R1971) Analysis Of Feedback Queueing Model With Differentiated Vacations Under Classical Retrial Policy, Poonam Gupta, Naveen Kumar, Rajni Gupta

Applications and Applied Mathematics: An International Journal (AAM)

This paper analyzes an M/M/1 retrial queue under differentiated vacations and Bernoulli feedback policy. On receiving the service, if the customer is not satisfied, then he may join the retrial group again with some probability and demand for service or may leave the system with the complementary probability. Using the probability generating functions technique, the steady-state solutions of the system are obtained. Furthermore, we have obtained some of the important performance measures such as expected orbit length, expected length of the system, sojourn times and probability of server being in different states. Using MATLAB software, we have represented the graphical …

Application Of Probabilistic Ranking Systems On Women’S Junior Division Beach Volleyball, Cameron Stewart, Michael Mazel, Bivin Sadler

SMU Data Science Review

Women’s beach volleyball is one of the fastest growing collegiate sports today. The increase in popularity has come with an increase in valuable scholarship opportunities across the country. With thousands of athletes to sort through, college scouts depend on websites that aggregate tournament results and rank players nationally. This project partnered with the company Volleyball Life, who is the current market leader in the ranking space of junior beach volleyball players. Utilizing the tournament information provided by Volleyball Life, this study explored replacements to the current ranking systems, which are designed to aggregate player points from recent tournament placements. Three …

A Functional Optimization Approach To Stochastic Process Sampling, Ryan Matthew Thurman

USF Tampa Graduate Theses and Dissertations

The goal of the current research project is the formulation of a method for the estimation and modeling of additive stochastic processes with both linear- and cycle-type trend components as well as a relatively robust noise component in the form of Levy processes. Most of the research in stochastic processes tends to focus on cases where the process is stationary, a condition that cannot be assumed for the model above due to the presence of the cyclical sub-component in the overall additive process. As such, we outline a number of relevant theoretical and applied topics, such as stochastic processes and …

A Computational Study Of Genotype-Phenotype Mutation Patterns, Kamaludin Dingle, Omar Tawfik, Ahmed Aldabagh

Undergraduate Research Symposium

Understanding properties of genotype-phenotype maps is important for understanding biology and evolution. In this project we make a computational study of the statistical effects of genetic mutations, in particular computing the probabilities of each phenotype transitioning to any other phenotype. We also investigate the importance of the local phenotypic environment of a single genotype, and its role in determining mutation transition probabilities. We use HP protein folding, RNA structure, and a simplified GRN matrix model to study these questions.

Monty Hall Meets Game Theory, Jamie Lynn Dobson

Honors Projects

I explored the Monty Hall game scenario and how to calculate the chances of winning by staying or switching doors using a probability and game theory approach. I also calculated how these chances change when there are 4, 5,..., n doors.

Markov Model Composition Of Balinese Reyong Norot Improvisations, Taylor Flanagan, Robert Rovetti

Honors Thesis

Markov models are mathematical structures that model the transition between possible states based on the probability of moving from one state to any other. Thus, given a distribution of starting points, the model produces a chain of states that are visited in sequence. Such models have been used extensively to generate music based on probabilities, as sequences of states can represent sequences of notes and rhythms. While music generation is a common application of Markov models, most existing work attempts to reconstruct the musical style of classical Western composers. In this thesis, we produce a series of Markov chains that …

Dynamic Neuromechanical Sets For Locomotion, Aravind Sundararajan

Doctoral Dissertations

Most biological systems employ multiple redundant actuators, which is a complicated problem of controls and analysis. Unless assumptions about how the brain and body work together, and assumptions about how the body prioritizes tasks are applied, it is not possible to find the actuator controls. The purpose of this research is to develop computational tools for the analysis of arbitrary musculoskeletal models that employ redundant actuators. Instead of relying primarily on optimization frameworks and numerical methods or task prioritization schemes used typically in biomechanics to find a singular solution for actuator controls, tools for feasible sets analysis are instead developed …

Nonparametric Bayesian Deep Learning For Scientific Data Analysis, Devanshu Agrawal

Doctoral Dissertations

Deep learning (DL) has emerged as the leading paradigm for predictive modeling in a variety of domains, especially those involving large volumes of high-dimensional spatio-temporal data such as images and text. With the rise of big data in scientific and engineering problems, there is now considerable interest in the research and development of DL for scientific applications. The scientific domain, however, poses unique challenges for DL, including special emphasis on interpretability and robustness. In particular, a priority of the Department of Energy (DOE) is the research and development of probabilistic ML methods that are robust to overfitting and offer reliable …

Applying The Data: Predictive Analytics In Sport, Anthony Teeter, Margo Bergman

Access*: Interdisciplinary Journal of Student Research and Scholarship

The history of wagering predictions and their impact on wide reaching disciplines such as statistics and economics dates to at least the 1700’s, if not before. Predicting the outcomes of sports is a multibillion-dollar business that capitalizes on these tools but is in constant development with the addition of big data analytics methods. Sportsline.com, a popular website for fantasy sports leagues, provides odds predictions in multiple sports, produces proprietary computer models of both winning and losing teams, and provides specific point estimates. To test likely candidates for inclusion in these prediction algorithms, the authors developed a computer model, and test …

Covid-19 And Quantitative Literacy: Focusing On Probability, Michael A. Lewis

Numeracy

The COVID-19 pandemic is arguably the worst crisis the world has faced, so far, in this new century. We haven’t seen a pandemic like this since the 1918 Flu at the beginning of the last century, and, as of this writing, there appears to be no end in sight. What those of us who’re focused on quantitative methods have noticed, in addition to the many people dying, becoming ill, and losing their livelihoods, is the importance of quantitative literacy to an understanding of what’s going on. That’s what this article is about. Specifically, it’s about how the COVID-19 pandemic is …

Dice Questions Answered, Warren Campbell, William P. Dolan

SEAS Faculty Publications

Superstitious discussion of fair and unfair dice has pervaded the tabletop gaming industry since its inception. Many of these are not based on any quantitative data or studies. Consequently, misconceptions have been spread widely. One dice float test video on Youtube currently has 925,000 views (Fisher, 2015a). To combat the flood of misconceptions we investigated the following questions: 1) Are dice cursed? 2) Are D20s (20-sided dice) less fair than D6s (6-sided dice)? 3) Do float tests tell anything about the fairness of dice? 4) Are some dice systems inherently fairer than others? 5) Are density differences or dimensions more …

Pair-A-Dice Lost: Experiments In Dice Control, Robert H. Scott Iii, Donald R. Smith

UNLV Gaming Research & Review Journal

This paper presents our findings from experiments designed to test whether we could use a custom-made dice throwing machine applying common dice control methods to produce dice rolls that differ from random. In earlier research we calculated the percentages of control a craps player needs to break even or beat the house (Smith and Scott, 2018). Using the most common practices of dice control in craps, we established how dice should be configured (i.e., set) and thrown to achieve certain outcomes such as not rolling a seven in the point cycle. We decided to run experiments to see if a …

The Martingale Approach To Financial Mathematics, Jordan M. Rowley

Master's Theses

In this thesis, we will develop the fundamental properties of financial mathematics, with a focus on establishing meaningful connections between martingale theory, stochastic calculus, and measure-theoretic probability. We first consider a simple binomial model in discrete time, and assume the impossibility of earning a riskless profit, known as arbitrage. Under this no-arbitrage assumption alone, we stumble upon a strange new probability measure Q, according to which every risky asset is expected to grow as though it were a bond. As it turns out, this measure Q also gives the arbitrage-free pricing formula for every asset on our market. In …

Paper Structure Formation Simulation, Tyler R. Seekins

Electronic Theses and Dissertations

On the surface, paper appears simple, but closer inspection yields a rich collection of chaotic dynamics and random variables. Predictive simulation of paper product properties is desirable for screening candidate experiments and optimizing recipes but existing models are inadequate for practical use. We present a novel structure simulation and generation system designed to narrow the gap between mathematical model and practical prediction. Realistic inputs to the system are preserved as randomly distributed variables. Rapid fiber placement (~1 second/fiber) is achieved with probabilistic approximation of chaotic fluid dynamics and minimization of potential energy to determine flexible fiber conformations. Resulting digital packed …

Surprise Vs. Probability As A Metric For Proof, Edward K. Cheng, Matthew Ginther

Edward Cheng

In this Symposium issue celebrating his career, Professor Michael Risinger in Leveraging Surprise proposes using "the fundamental emotion of surprise" as a way of measuring belief for purposes of legal proof. More specifically, Professor Risinger argues that we should not conceive of the burden of proof in terms of probabilities such as 51%, 95%, or even "beyond a reasonable doubt." Rather, the legal system should reference the threshold using "words of estimative surprise" -asking jurors how surprised they would be if the fact in question were not true. Toward this goal (and being averse to cardinality), he suggests categories such …

One-Dimensional Excited Random Walk With Unboundedly Many Excitations Per Site, Omar Chakhtoun

Dissertations, Theses, and Capstone Projects

We study a discrete time excited random walk on the integers lattice requiring a tail decay estimate on the number of excitations per site and extend the existing framework, methods, and results to a wider class of excited random walks.

We give criteria for recurrence versus transience, ballisticity versus zero linear speed, completely classify limit laws in the transient regime, and establish a functional limit laws in the recurrence regime.

Probabilities Involving Standard Trirectangular Tetrahedral Dice Rolls, Rulon Olmstead, Doneliezer Baize

Rose-Hulman Undergraduate Mathematics Journal

The goal is to be able to calculate probabilities involving irregular shaped dice rolls. Here it is attempted to model the probabilities of rolling standard tri-rectangular tetrahedral dice on a hard surface, such as a table top. The vertices and edges of a tetrahedron were projected onto the surface of a sphere centered at the center of mass of the tetrahedron. By calculating the surface areas bounded by the resultant geodesics, baseline probabilities were achieved. Using a 3D printer, dice were constructed of uniform density and the results of rolling them were recorded. After calculating the corresponding confidence intervals, the …

Mixed Logical And Probabilistic Reasoning In The Game Of Clue, Todd W. Neller, Ziqian Luo

Computer Science Faculty Publications

Neller and Ziqian Luo ’18 presented a means of mixed logical and probabilistic reasoning with knowledge in the popular deductive mystery game Clue. Using at-least constraints, we more efficiently represented and reasoned about cardinality constraints on Clue card deal knowledge, and then employed a WalkSAT-based solution sampling algorithm with a tabu search metaheuristic in order to estimate the probabilities of unknown card places.

Calculus Of The Impossible: Review Of The Improbability Principle (2014) By David Hand And The Logic Of Miracles (2018) By Lásló Mérő, Samuel L. Tunstall

Numeracy

David J. Hand. 2014. The Improbability Principle: Why Coincidences, Miracles, and Rare Events Happen Every Day (New York, NY: Scientific American/Farrar, Straus and Giroux) 288 pp. ISBN: 978-0374175344.

Lásló Mérő. 2018. The Logic of Miracles: Making Sense of Rare, Really Rare, and Impossibly Rare Events (New Haven, CT: Yale University Press) 288 pp. ISBN: 978-0300224153.

David Hand and Lásló Mérő both grapple with the occurrence of seemingly impossible events in these two popular science books. In this comparative review, I describe the two books, and explain why I prefer Hand's treatment of the impossible.

Golden Arm: A Probabilistic Study Of Dice Control In Craps, Donald R. Smith, Robert Scott Iii

UNLV Gaming Research & Review Journal

This paper calculates how much control a craps shooter must possess on dice outcomes to eliminate the house advantage. A golden arm is someone who has dice control (or a rhythm roller or dice influencer). There are various strategies for dice control in craps. We discuss several possibilities of dice control that would result in several different mathematical models of control. We do not assert whether dice control is possible or not (there is a lack of published evidence). However, after studying casino-legal methods described by dice-control advocates, we can see only one realistic mathematical model that describes the resulting …

Educational Magic Tricks Based On Error-Detection Schemes, Ronald I. Greenberg

Ronald Greenberg

Magic tricks based on computer science concepts help grab student attention and can motivate them to delve more deeply. Error detection ideas long used by computer scientists provide a rich basis for working magic; probably the most well known trick of this type is one included in the CS Unplugged activities. This paper shows that much more powerful variations of the trick can be performed, some in an unplugged environment and some with computer assistance. Some of the tricks also show off additional concepts in computer science and discrete mathematics.

Surprise Vs. Probability As A Metric For Proof, Edward K. Cheng, Matthew Ginther

Vanderbilt Law School Faculty Publications

In this Symposium issue celebrating his career, Professor Michael Risinger in Leveraging Surprise proposes using "the fundamental emotion of surprise" as a way of measuring belief for purposes of legal proof. More specifically, Professor Risinger argues that we should not conceive of the burden of proof in terms of probabilities such as 51%, 95%, or even "beyond a reasonable doubt." Rather, the legal system should reference the threshold using "words of estimative surprise" -asking jurors how surprised they would be if the fact in question were not true. Toward this goal (and being averse to cardinality), he suggests categories such …

Analyzing The Probabilistic Spread Of A Virus On Various Networks, Teagan Decusatis

Senior Projects Spring 2018

In this project we model the spread of a virus on networks as a probabilistic process. We assume the virus breaks out at one vertex on a network and then spreads to neighboring vertices in each time step with a certain probability. Our objective is to find probability distributions that describe the uncertain number of infected vertices at a given time step. The networks we consider are paths, cycles, star graphs, complete graphs, and broom graphs. Through the use of Markov chains and Jordan Normal Form we analyze the probability distribution of these graphs, characterizing the transition matrix for each …

Estimation Of The Three Key Parameters And The Lead Time Distribution In Lung Cancer Screening., Ruiqi Liu

Electronic Theses and Dissertations

This dissertation contains three research projects on cancer screening probability modeling. Cancer screening is the primary technique for early detection. The goal of screening is to catch the disease early before clinical symptoms appear. In these projects, the three key parameters and lead time distribution were estimated to provide a statistical point of view on the effectiveness of cancer screening programs. In the first project, cancer screening probability model was used to analyze the computed tomography (CT) scan group in the National Lung Screening Trial (NLST) data. Three key parameters were estimated using Bayesian approach and Markov Chain Monte Carlo …