Physical Sciences and Mathematics Commons^™

Molecular Level Characterization Of Dissolved Organic Matter Integrating Trapped Ion Mobility Spectrometry And Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Dennys Leyva Bombuse

FIU Electronic Theses and Dissertations

Dissolved organic matter (DOM) is an extremely complex mixture of organic molecules ubiquitous in aquatic systems and a critical component of the global carbon cycle. Little is known about DOM structural composition at the molecular level. The work presented in this dissertation summarizes the development of a novel analytical toolbox based on trapped ion mobility spectrometry and Fourier transform ion cyclotron resonance mass spectrometry (TIMS-FT-ICR MS) that has significantly contributed to expand our knowledge of DOM molecular complexity and diversity. The TIMS-FT-ICR MS/MS analysis provided for the first-time lower and upper estimation of the molecular isomeric diversity. The TIMS-FT-ICR MS/MS …

Allosteric Mechanism On Dream Dimerization And Impact On Its Interactions With Divalent Metal Zn2+, Maria D. Santiago Estevez

FIU Electronic Theses and Dissertations

DREAM belongs to the NCS family, and it is involved in several physiological processes mediated by Ca²⁺ association, which produces changes in its oligomerization state. The mechanism of how Ca²⁺ binds to DREAM remains unknown. A kinetic study of the binding of Ca²⁺ to DREAM suggested that DREAM dimerization is a two-step process, the first step( τ₁= 8±0.1ms) is associated with the binding of Ca²⁺ to the monomer, while the second step (τ₂ = 3.6 ±0.4 s ) corresponds to a conformation relaxation that leads to the dimerization. Furthermore, by analyzing the fast …

Assessment Of The Toxicity Of Legacy And Next-Generation Perfluoroalkyl Substances (Pfas) In Early-Life Stages Of Freshwater And Marine Fish, Kiflom Gebreab

FIU Electronic Theses and Dissertations

Per- and polyfluoroalkyl substances (PFASs) are a group of synthetic surfactants that have utilized for several decades in a wide range of industrial and manufacturing applications. Owing to their high chemical stability, PFAS are widespread and persistent in the environment, and have been shown to be bioaccumulative in diverse organisms including plants, wildlife, and humans. Exposure to PFASs has been linked to a range of documented toxic and/or adverse effects in relation to human and animal health. The potential environmental health and ecotoxicity of next-generation PFAS remain unclear. In the present study, toxicity, and bioconcentration potential, of several perfluoroether carboxylic …

Synthesis, Structure-Activity And Mechanism Studies Of Poly(Guanylurea)S Against Mycobacteria, Michelle M. Miranda

FIU Electronic Theses and Dissertations

Tuberculosis (TB) continues to be a serious threat worldwide, especially in developing countries. Current first-line treatment for TB infections is a multidrug regimen for 4-9 months; if not taken as prescribed, drug-resistant TB can emerge. Novel drugs with unconventional targets are warranted to lessen the lengthy and four-drug treatment. Antimicrobial polymers mimicking naturally occurring antimicrobial peptides (AMPs) have gained much attention due to their enzymatic stability, tunability, cost-effectiveness, and unique mode of action - directly or indirectly - on bacterial membrane. However, selectivity and toxicity have limited their biological applications. Previously, our group synthesized a novel class of antimicrobial polymers, …

Synthesis Of Phenyl Carbamoylated Guanidine Functionalized Chitosan, Eduardo Hernandez Requejo

FIU Electronic Theses and Dissertations

The lack of solubility of the chitosan in organic solvents hinders its potential for chemical modifications. For this reason, it was hypothesized that the insertion of the phenyl carbamoylated guanidine moiety could lead to increased solubility in DMSO and new potential modifications and uses.

This research involved the synthesis of S-methyl phenyl carbamoylated guanidine (SMPCG) starting from the commercially available S-methyl isothiourea. This was followed by the reaction of the SMPCG with chitosan to yield phenyl carbamoylated guanidine functionalized chitosan (PCGCs) with a degree of substitution of 14%.

The chitosan derivative is fully soluble in DMSO and partially in DMF. …

Modified Guanidine-Containing Polymers For Intracellular Protein Delivery, Alfonso Barrios

FIU Electronic Theses and Dissertations

Protein-based therapeutics have gained significant attention for treating or curing various diseases, especially those untreatable by small molecule-drugs. Despite their widespread success and adoption, the cellular membrane remains a major obstacle for proteins to reach the inner compartments of the cell and have had limited applicability spanning only extracellular targets. Consequently, the efficient intracellular delivery of proteins offers tremendous potential to reach new, unexplored, and otherwise “undruggable” targets. Acknowledging the therapeutic need, research efforts aimed at facilitating the delivery of proteins using polymer-based nanoparticles have emerged.

Guanidine-containing polymers provide a promising platform to address the common hurdles associated with protein …

Crude Oil Characterization Using Gas Chromatography, Ion Mobility Spectrometry And Mass Spectrometry, Clement A. Olanrewaju

FIU Electronic Theses and Dissertations

The characterization of crude oils at the compositional level remains challenging due to their high chemical complexity and isomeric diversity. The present work expands the analytical separation space of chemical components in crude oils by coupling gas chromatography (GC), trapped ion mobility spectrometry (TIMS), and mass spectrometry (GC-TIMS-MS and TIMS-FT-ICR MS) for the effective separation and identification of isomeric compounds. The coupling of GC and TIMS-MS platform enhanced the peak capacity and showed complementary isomeric separation. The combination of GC-TIMS-MS and GC-EI-MS technique provided a comprehensive characterization of PAHs and similar compounds from crude oils on the basis of retention …

The Utilization Of Volatile Organic Compounds And Human Leukocyte Antigen Genes For Ethnic-Specific Differentiation Within Target Populations, Alice Breia Boone

FIU Electronic Theses and Dissertations

Human scent has been previously defined as a complex mixture of volatile organic compounds (VOCs) detected in the headspace above a scent sample. Humans generate odor from several areas of the body including hair, mouth, hand, axillae, and foot. Due to the novelty of human scent research, human scent evidence has been undervalued in the court of law. However, this type of evidence has significant value when physical evidence is not available at crime scenes. To increase the individualization and differentiation power of human scent evidence, this study aimed to further investigate the identification of chemical signatures within axillae of …

Development Of A Microwave-Based Dna Extraction Method To Increase The Success Of Direct And Rapid Pcr Technique, Fabiana Taglia

FIU Electronic Theses and Dissertations

The goal of this project was to develop a fast, microwave-based extraction technique that could be employed for direct and rapid DNA analysis. The hypothesis was that the use of a microwave could increase the yield of DNA by opening the cell membrane, rendering the DNA available without the use of any other chemical treatment, and improving results from very low quantity samples.

At present rapid human DNA analysis is mainly restricted to genotyping saliva and sometimes blood samples. We hypothesized that microwave processing could expand the types of samples assessable to these procedures and increase sensitivity.

There were two …

An Investigation To Corroborate Volatile And Biological Profiles Of Human Odor For Forensic Subject Identification, Chantrell J.G. Frazier

FIU Electronic Theses and Dissertations

Hands are an integral part in transferring complex microbial communities to and from our surroundings. As a result, hands are significant in provenance investigations as specific microbiota can be deposited on everyday objects through touch interactions. Skin microbiome, including bacteria, fungi, and viruses, are unique to each person, and this ‘uniqueness’ can be exploited and applied to forensic identification. Skin microbiota and volatile organic compounds (VOCs) are closely related due to specific bacteria breaking down non-volatile organic compounds to volatile organic compounds that are characteristically present in human scent. However, analyses of microbiota from touch interactions have proven to be …

O-Sulfonamidophenol Ligands And Derivatives For F-Element Sensing, Complexation, And Extraction From Alkaline High-Level Waste, Oluwaseun William Adedoyin

FIU Electronic Theses and Dissertations

The accumulated (>100 Mgal) alkaline high-level waste (HLW), which is a legacy of nuclear weapons manufacturing during the cold war era, is an issue of environmental concern that has presented reprocessing challenges, due to its complex physicochemical properties and the presence of ¹³⁷Cs, ⁹⁰Sr, and long-lived actinides.

This study is focused on o-sulfonamidophenol derivatives bearing electron-rich O- and N- donor sites (when deprotonated in alkaline conditions) for effective complexation, sensing, and extraction of f-elements from highly alkaline solutions. Using Ln(III) as experimental surrogates for An(III), a family of o-sulfonamidophenol ligands (L1H₂ – L4H_{2 …}

Evaluation And Improvement Of Capillary Microextraction Of Volatiles Coupled To Gas Chromatography-Mass Spectrometry For The Analysis Of Ignitable Liquid Residues In Fire Debris, Michelle Nikole Torres

FIU Electronic Theses and Dissertations

A key aspect of fire debris analysis is the ability to extract the remnants of an ignitable liquid from a matrix with a high degree of reliability and sensitivity. Although there are several robust, standardized methods, there is no single technique universally applicable to casework. In this work a novel extraction technique – Capillary Microextraction of Volatiles (CMV) – has been applied, for the first time, for ignitable liquid residue (ILR) extraction. A 20-minute dynamic sampling laboratory protocol from traditional 1 L paint cans was established and optimized based upon ASTM guidelines. The development of new adsorption phases for CMV …

Aptamer-Based Voltammetric Biosensing For The Detection Of Codeine And Fentanyl In Sweat And Saliva, Rosa Lashantez Cromartie

FIU Electronic Theses and Dissertations

Despite the many governmental and medicinal restrictions created to combat the opioid epidemic in the United States, opioid abuse and overdose rates continue to rise. The development of an aptamer-based voltammetric sensor and biosensor is described in this dissertation. The aim was to develop a low-cost, sensitive, and specific aptamer-based sensor for on-site, label-free determination of codeine and fentanyl in biological fluids. To do this, the surfaces of screen-printed carbon electrodes (SPCE) were modified with gold nanoparticles (AuNPs), followed by the addition of single-stranded DNA aptamers. These were covalently bound to the electrode surface. Operations of the sensors were collected …

Characterization Of Biological Samples Using Multi-Modal Mass Spectrometry, Yarixa L. Cintron-Diaz

FIU Electronic Theses and Dissertations

There is a need for fast, accurate and cost-effective protocols capable of assessing biomolecules at the molecular level (e.g., proteins, lipids and metabolites) from biological specimens. Mass spectrometry (MS) based techniques have become the analytical gold standard for identification and characterization of biomarkers in biological samples. The high throughput and short analysis time scales enables to follow biological processes while providing detailed chemical and spatial characterization. One of the current challenges in biological MS, is the high molecular complexity, chemical diversity and dynamic range. In this dissertation, the use of multi-modal mass spectrometry workflows -mass spectrometry imaging and ion mobility …

Non-Target Analysis Using High-Resolution Mass Spectrometry To Characterize And Remediate Urban Waters, Brian Ng

FIU Electronic Theses and Dissertations

The first part of this dissertation will focus on the development of a simple, robust online solid phase extraction liquid chromatography high resolution mass spectrometry (SPE LC-HRMS) method followed by the use of computational software workflows for non-target analysis (NTA) of environmental samples (development). The benchmarks to assess reproducibility are not well defined for non-target analysis. Parameters to evaluate analytical performance, such as accuracy, precision and selectivity, are well defined for target analysis, but remain elusive for non-target screening analysis. In this study, quality control (QC) guidelines are proposed to assure reliable data in NTA methodologies using a simple …

Ligands For Complexation, Extraction, And Sensing Of Mercury(Ii) For Application To High-Level Waste (Hlw) At The Savannah River Site (Srs), Adenike O. Fasiku

FIU Electronic Theses and Dissertations

Mercury (Hg) separation and sensing is of high significance due to Hg^(II) environmental mobility and toxicity. Furthermore, the use of Hg in nuclear applications has resulted in its accumulation in several DOE sites, such as in Oak Ridge and Savannah River reservations. Organic mercury species have been found in low activity waste (LAW) streams resulting from high-level waste (HLW) processing at the Savannah River Site (SRS), therefore posing a threat to humans and the environment. Mercury, being a soft Lewis acid, has a strong affinity for softer Lewis bases, such as S- or N-donor ligands. Therefore, we focus on …

A Study Of The Mammalian High Mobility Group Protein At-Hook 2 (Hmga2) And Its Interactions With Dna, Linjia Su

FIU Electronic Theses and Dissertations

The mammalian high-mobility-group protein AT-hook 2 (HMGA2) is a small DNA-binding protein and consists of three positively charged “AT-hooks” and a negatively charged C-terminal motif. It is a multifunctional nuclear protein linked to obesity, human height, stem cell youth, human intelligence, and tumorigenesis. Previous results showed that HMGA2 is a potential therapeutic target of anticancer and anti‐obesity drugs through inhibiting its DNA‐binding activities. Here a miniaturized, automated AlphaScreen ultra‐high‐throughput screening assay is developed to identify inhibitors targeting HMGA2‐DNA interactions. After screening the LOPAC1280 library, several compounds are identified that strongly inhibit HMGA2‐DNA interactions including suramin, a negatively charged antiparasitic drug. …

High And Low Toxin Producing Strains Of Karenia Brevis Differ Significantly In The Redox Proteome, Lipid Profiles, And Xanthophyll Cycle Pigments, Ricardo Colon

FIU Electronic Theses and Dissertations

The dinoflagellate Karenia brevis, blooms annually in the Gulf of Mexico, producing a suite of neurotoxins known as the brevetoxins. The cellular toxin content of K. brevis, however, is highly variable between or even within strains. I investigated biochemical differences between high (KbHT) and low (KbLT) toxin producing cultures both derived from the Wilson strain, related to energy-dependent quenching (qE) by photosystem II, and the content of reduced thiols of the proteome. By characterizing the xanthophyll content of the two strains I was able to determine that KbLT performs qE inconsistently. To investigate the …

Purine Nucleosides Modified At C8 Or C2 Position With (Β-Halo)Vinylsulfone And Β-Ketosulfone Reactive Groups And Their Incorporation Into Dna: Synthesis Of The Organoarsenical Antibiotic Arsinothricin And Polyaromatic Hydrocarbons, Md Abu Hasan Howlader

FIU Electronic Theses and Dissertations

Modified nucleosides gained great attention as potential anticancer and antiviral therapeutics. In this dissertation, synthesis and reactivity of (β-iodovinyl)sulfone and β-ketosulfone groups incorporated into purine nucleosides at C8 or C2 positions and DNA incorporation of their 5' triphosphates have been developed. Moreover, synthesis of novel antibiotic arsinothricin (AST) as well as polycyclic aromatic hydrocarbons (PAHs) have been discussed. The 8-(1-iodo-2-tosylvinyl)-2'-deoxyadenosine and 8-(1-Iodo-2-tosylvinyl)adenosine were synthesized employing iodovinylsulfonation of 8-ethynyl precursors with TsNa/I₂/NaOAc. The 8-(β-iodovinyl)sulfonyl-2'-deoxyguanosine was prepared via radical mediated iodovinylsulfonation of 8-ethynyl-2'-deoxyguanosine with TsNHNH₂/KI/(BzO)₂. Conformationally different C2 substituted isomeric adenosine analogues were prepared by iodovinylsulfonation …

The Coordination Chemistry Of The Rhodizonate Dianion And Its Decomposition Products, Joshua A. Silverman

FIU Electronic Theses and Dissertations

The rhodizonate dianion is of importance for forensic testing, specifically with regard to the sodium rhodizonate test for lead in gunpowder residues. In an effort to understand this test from a chemical perspective, the coordination of rhodizonate and its decomposition products, croconate and oxalate, with several metals has been investigated with a variety of structural and spectroscopic methods.

FT-IR data of the three sequential steps of the sodium rhodizonate test show coordination between Pb(II) atoms, tartrate anions, and rhodizonate dianions, with the tartrate being substituted for Cl^- once a 5% HCl solution is added to produce the confirmatory blue-purple …

Lanthanide Interactions With Ligands And Biomolecules: Spectroscopic And Extraction Studies, Setareh Sakhdari

FIU Electronic Theses and Dissertations

Lanthanides (Ln), also known as rare earth metals, have been utilized for industrial and biological purposes and are commonly encountered in the 3+ oxidation state as Ln³⁺. The presence of Ln in spent nuclear fuel introduces problems during the transmutation and partitioning of actinides (An) due to the Ln high neutron cross-sections. Therefore, designing ligands for Ln³⁺ complexation, can be helpful for their separation from An³⁺ in nuclear technology. Also, the biomimetic roles of Ln³⁺ could be suitable for studying the biological macromolecules, such as the Ca²⁺-binding EF-hand proteins that are otherwise inaccessible …

Utilizing Headspace Solid-Phase Microextraction For The Characterization Of Volatile Organic Compounds Released From Contraband And Its Implications For Detector Dog Training, Kelvin Joseph Frank Jr

FIU Electronic Theses and Dissertations

Improving the accuracy and reliability of odor detection dogs is of utmost importance particularly for legal reasons. Field testing in conjunction with headspace analysis of volatile organic compounds (VOCs) has in recent times allowed for these improvements, by providing scientifically based recommendations for optimum training protocols. The current project leveraged on these established capabilities to enhance three areas of odor detection: illicit drugs, explosives and mass storage devices.

With hemp being legalized under the 2018 Farm Bill, legal questions have been raised regarding a dog’s ability to ignore hemp if trained to detect marijuana, as both are types of Cannabis …

Evaluation Of Harvesting Time For Industrial Hemp (Cannabis Sativa L,) Pilot Project Varieties Grown In South Florida, Jordan W. Prats

FIU Electronic Theses and Dissertations

A field study was conducted to observe the natural development of cannabinoids in three daylength sensitive industrial hemp varieties Bubba Kush (BK), Emerald Flower (EF), and Golden Sunset (GS). Plants were configured in a randomized block design with 3 replications. Once 50% of the plants within a variety reached reproductive growth, plants were sampled weekly until senescence and analyzed through a HPLC-UV/DAD. The results from the study indicate that all three varieties of industrial hemp tested in field study reached reproductive growth within the first week of transplanting. This is due to a 12-hour day-length at the time and the …

Competitive Reductive Removal Of Chromate And Pertechnetate Via Zero-Valent Iron, Jonathan Williams Ramirez

FIU Electronic Theses and Dissertations

Treatment to immobilize radioactive waste is of concern for long-term storage, avoiding future environmental exposure. Most production of Technetium-99 (⁹⁹Tc) occurred as a byproduct of development of legacy nuclear weapons research. Zero-valent iron (ZVI) is a promising reductant of Tc(VII) to a less mobile ⁹⁹Tc(IV). However, more redox-sensitive contaminants can compete in the reductive process. Therefore, it is important to examine the effects of competitive contaminants and quantify the effects on the reductive removal rates of ⁹⁹Tc. Chromate, Cr(VI), is a redox-sensitive contaminant that is expected to be present in legacy waste present in the Hanford …

Uranium Fate And Mineral Transformations Upon Remediation With Ammonia (Nh3) Gas, Silvina A. Di Pietro

FIU Electronic Theses and Dissertations

The fission of uranium (U) for plutonium production was a major activity at the U.S. Department of Energy’s (DOE) Hanford Site in Washington State during World War II and Cold War. This endeavor resulted in the generation of over two million liters of high-level radioactive waste, most of which still remains in 177 underground storage tanks. Due to the improper storage and aging of these tanks in addition to other waste releases across the Site, approximately 200,000 kg of U have been released into the vadose zone. The objective of this study was to determine whether the application of the …

Fundamental Studies Of The Singlet Oxygenation Of Water Soluble Biological And Environmental Important Molecules, Marcela Jaramillo

FIU Electronic Theses and Dissertations

Singlet oxygen, 1O2, can be easily generated by a sensitizer, solar radiation, and molecular oxygen. 1O2 is very important in a range of biological and environmental systems. The products and mechanisms of the 1O2 reactions are well studied in organic solvents, and despite well-established solvent effects, studies on the reactions of the singlet oxygen in aqueous media are limited. Herein, 1O2 reactions with biologically and environmentally relevant conjugated π systems in aqueous solutions are presented. Water-soluble isomeric 1, 3-hexadienes are simple mechanistic probes for the 1O2 reactions since concerted and non-concerted pathways produce distinct products. The isomerization of sorbic acid …

Organic-Inorganic Halide Perovskite Nanocrystals And Solar Cells, Rui Guo

FIU Electronic Theses and Dissertations

A great challenge facing humanity in the 21^st century is finding inexhaustible and inexpensive energy sources to power the planet. Renewable energies are the best solutions because of their abundance, diversity, and pollution-free emission. Solar energy is the cleanest and most abundant renewable energy source available. In the continuing quest for efficient and low-cost solar cells, perovskite solar cells (PSCs) have emerged as a potential replacement for silicon solar cells. Since 2009, the record efficiencies of PSCs have been skyrocketing from 3.8 % to 25.2 % and are now approaching the theoretical limit. Along with the three-dimensional perovskites used …

Surface Enhanced Raman Spectroscopy (Sers) As A Nanoscale Adsorption Phenomenon: Development Of Tailored Nanomaterials For Applications In Drug Detection, Chiara Deriu

FIU Electronic Theses and Dissertations

Surface Enhanced Raman Spectroscopy (SERS) is an analytical technique in which nanostructured substrates amplify the inherently weak Raman signal of an adsorbed species by several orders of magnitude, enabling the detection of trace compounds, up to the single molecule level. While this may be an exceptional tool for any analytical scientist, SERS is at present relegated to the role of academic sensation, and is underutilized in everyday analytical practice. The SERS community is increasingly attributing this setback to a poor understanding of nanoscale surfaces and their chemical environment; since molecular adsorption at the nanostructured surface enables SERS detection, uncertainty about …

The Development Of A Surface Enhanced Raman Spectroscopy Method For The Detection Of Synthetic Cannabinoids In Urine, Thaddeus Mostowtt

FIU Electronic Theses and Dissertations

The use and abuse of synthetic cannabinoids has increased significantly in recent years due to their easy access and growing popularity. Despite having more known drugs become illegal, new synthetic versions of these drugs are being made that have not yet been recognized or classified as illegal substances. Therefore, standard methods may not be able to detect these drugs.

The most common method of screening detection for drugs of abuse in biological samples is the immunoassay. However, the immunoassay method presents some disadvantages, particularly for newly synthesized compounds. More advanced methods have also been used, such as LC-MS; however, these …

Dipicolinamide Ligands And Analogs For Lanthanides (Ln), Actinides (An) And Mercury (Hg) For Application To Nuclear Fuel Cycle Separations And Waste Management, Ingrid Lehman-Andino

FIU Electronic Theses and Dissertations

Spent nuclear fuel (SNF) – or used nuclear fuel (UNF) – contains long-lived minor actinides such as ²⁴¹Am, ²⁴⁵Cm, and ²³⁷Np, together with fission products that include lanthanides. Minor actinides are responsible for much of the radiotoxicity and heat generation that limits the capacity of geological repositories. Thus, removing minor actinides from UNF can reduce storage time required for decay to natural levels of activity by several orders of magnitude. Actinide(An)/Lanthanide(Ln) separation processes via solvent extraction by selective complexation with organic or aqueous ligands have to overcome difficulties due to similarities in their ionic radii for the …