Physical Sciences and Mathematics Commons^™

Probabilistic Modeling Of Social Media Networks, Distinguishing Phylogenetic Networks From Trees, And Fairness In Service Queues, Md Rashidul Hasan

Mathematics & Statistics ETDs

In this dissertation, three primary issues are explored. The first subject exposes who-saw-from-whom pathways in post-specific dissemination networks in social media platforms. We describe a network-based approach for temporal, textual, and post-diffusion network inference. The conditional point process method discovers the most probable diffusion network. The tool is capable of meaningful analysis of hundreds of post shares. Inferred diffusion networks demonstrate disparities in information distribution between user groups (confirmed versus unverified, conservative versus liberal) and local communities (political, entrepreneurial, etc.). A promising approach for quantifying post-impact, we observe discrepancies in inferred networks that indicate the disproportionate amount of automated bots. …

Modified Geometries, Clifford Algebras And Graphs: Their Impact On Discreteness, Locality And Symmetr, Roma Sverdlov

Mathematics & Statistics ETDs

In this dissertation I will explore the question whether various entities commonly used in quantum field theory can be “constructed". In particular, can spacetime be “constructed" out of building blocks, and can Berezin integral be “constructed" in terms of Riemann integrals.

As far as “constructing" spacetime out of building blocks, it has been attempted by multiple scientific communities and various models were proposed. But the common downfall is they break the principles of relativity. I will explore the ways of doing so in such a way that principles of relativity are respected. One of my approaches is to replace points …

Multilevel Optimization With Dropout For Neural Networks, Gary Joseph Saavedra

Mathematics & Statistics ETDs

Large neural networks have become ubiquitous in machine learning. Despite their widespread use, the optimization process for training a neural network remains com-putationally expensive and does not necessarily create networks that generalize well to unseen data. In addition, the difficulty of training increases as the size of the neural network grows. In this thesis, we introduce the novel MGDrop and SMGDrop algorithms which use a multigrid optimization scheme with a dropout coarsening operator to train neural networks. In contrast to other standard neural network training schemes, MGDrop explicitly utilizes information from smaller sub-networks which act as approximations of the full …

Using Physics-Informed Neural Networks For Multigrid In Time Coarse Grid Equations, Jonathan P. Gutierrez

Mathematics & Statistics ETDs

For parallel-in-time integration methods, the multigrid-reduction-in-time (MGRIT) method has shown promising results in both improved convergence and increased computational speeds when solving evolution problems. However, one problem the MGRIT algorithm currently faces is it struggles solving hyperbolic problems efficiently. In particular, hyperbolic problems are generally solved using explicit methods and this causes issues on the coarser multigrid levels, where larger (coarser) time step sizes can violate the stability condition. In this thesis, physics-informed neural networks (PINNs) are used to evaluate the coarse grid equations in the MGRIT algorithm with the goal to improve convergence for problems with hyperbolic behavior, as …

Mitigation Impact Of Statewide Non-Pharmaceutical Policies On Covid-19: An Application Of Infectious Disease Transmission Model And Partially Observed Markov Process To New Mexico, Xingya Ma

Mathematics & Statistics ETDs

This thesis is an application of epidemiological models for infectious disease transmission and the use of partially observed Markov process (POMP) for model fitting. It focuses on COVID-19 pandemic in the state of New Mexico. The analysis covered March 2020 to June 2021. Daily data of COVID19 cases and deaths and a daily index of eleven statewide government non-pharmaceutical intervention (NPI) policies were collected from six public sources and were validated. These data were integrated through the Susceptible-Exposed-Infected-Removed (SEIR) model. Estimated daily transmission rates between the model compartments quantify the impact of the mitigation policies, and show that transmission rates …

Convexity Of Regularized Optimal Transport Dissimilarity Measures For Signed Signals, Christian P. Fowler

Mathematics & Statistics ETDs

Debiased Sinkhorn divergence (DS divergence) is a distance function of

regularized optimal transport that measures the dissimilarity between two

probability measures of optimal transport. This thesis analyzes the advantages of

using DS divergence when compared to the more computationally expensive

Wasserstein distance as well as the classical Euclidean norm. Specifically, theory

and numerical experiments are used to show that Debiased Sinkhorn divergence

has geometrically desirable properties such as maintained convexity after data

normalization. Data normalization is often needed to calculate Sinkhorn

divergence as well as Wasserstein distance, as these formulas only accept

probability distributions as inputs and do not directly …

Statistical Methods For Differential Gene Expression Analysis Under The Case-Cohort Design, Lidong Wang

Mathematics & Statistics ETDs

Differential gene expression analysis has the potential to discover candidate biomarkers, therapeutic targets, and gene signatures. How to save money when using an unaffordable sample is a practical question. The case-cohort (CCH) study design can blend the economy of case-control studies with the advantages of cohort studies. But it has not been seen in the medical research literature where high-throughput genomic data were involved.

A score test does not need to fit the Cox PH model iteratively; hence, it can save computing time and avoid potential convergence issues. We developed a score test under the CCH design to identify DEGs …

Functional Data Analysis Of Covid-19, Nichole L. Fluke

Mathematics & Statistics ETDs

This thesis deals with Functional Data Analysis (FDA) on COVID data. The Data involves counts for new COVID cases, hospitalized COVID patients, and new COVID deaths. The data used is for all the states and regions in the United States. The data starts in March 1^st, 2020 and goes through March 31^st, 2021. The FDA smooths the data and looks to see if there are similarities or differences between the states and regions in the data. The data also shows which states and regions stand out from the others and which ones are similar. Also shown …

Music Genre Classification By Convolutional Neural Networks, Usame Suud

Mathematics & Statistics ETDs

In today’s world, deep learning models are widely used in a variety of fields. Audio

applications include speech recognition, audio classification, and music information

retrieval. In this paper, we will focus on the classification of music genres using an

artificial neural network. The development of audio machine learning techniques has

created an independence from traditional, more time-consuming signal processing

techniques. Starting with raw audio data, we will gain an understanding of what

audio is and its digital representation. Then, the focus will be on obtaining frequency

information from audio signals through the use of spectrograms. Transforming the

spectrograms into the …

Machine Learning Model Comparison And Arma Simulation Of Exhaled Breath Signals Classifying Covid-19 Patients, Aaron Christopher Segura

Mathematics & Statistics ETDs

This study compared the performance of machine learning models in classifying COVID-19 patients using exhaled breath signals and simulated datasets. Ground truth classification was determined by the gold standard Polymerase Chain Reaction (PCR) test results. A residual bootstrapped method generated the simulated datasets by fitting signal data to Autoregressive Moving Average (ARMA) models. Classification models included neural networks, k-nearest neighbors, naïve Bayes, random forest, and support vector machines. A Recursive Feature Elimination (RFE) study was performed to determine if reducing signal features would improve the classification models performance using Gini Importance scoring for the two classes. The top 25% of …

Robust Uncertainty Quantification With Analysis Of Error In Standard And Non-Standard Quantities Of Interest, Zachary Stevens

Mathematics & Statistics ETDs

This thesis derives two Uncertainty Quantification (UQ) methods for differential equations that depend on random parameters: (\textbf{i}) error bounds for a computed cumulative distribution function (\textbf{ii}) a multi-level Monte Carlo (MLMC) algorithm with adaptively refined meshes and accurately computed stopping-criteria. Both UQ approaches utilize adjoint-based \textit{a posteriori} error analysis in order to accurately estimate the error in samples of numerically approximated quantities of interest. The adaptive MLMC algorithm developed in this thesis relies on the adjoint-based error analysis to adaptively create meshes and accurately monitor a stopping criteria. This is in contrast to classical MLMC algorithms which employ either a …

Heterogeneity Of Gene Trees, Jonathan Nenye Odumegwu Unm

Mathematics & Statistics ETDs

Multilocus phylogenetic studies often show a high degree of gene tree heterogeneity —gene trees that have different topologies from each other as well as from the species tree topology. In some cases, this can lead to studies with hundreds of loci having distinct gene tree topologies. The degree of heterogeneity is expected to increase when there is a high degree of incomplete lineage sorting due to short branches (as measured in coalescent units) in the species tree. Other potential sources of heterogeneity include other biological processes such as introgression, recombination within genes, ancestral population structure, gene duplication and loss, and …

Applications Of Machine Learning Algorithms In Materials Science And Bioinformatics, Mohammed Quazi

Mathematics & Statistics ETDs

The piezoelectric response has been a measure of interest in density functional theory (DFT) for micro-electromechanical systems (MEMS) since the inception of MEMS technology. Piezoelectric-based MEMS devices find wide applications in automobiles, mobile phones, healthcare devices, and silicon chips for computers, to name a few. Piezoelectric properties of doped aluminum nitride (AlN) have been under investigation in materials science for piezoelectric thin films because of its wide range of device applicability. In this research using rigorous DFT calculations, high throughput ab-initio simulations for 23 AlN alloys are generated.

This research is the first to report strong enhancements of piezoelectric properties …

Sparse Spectral-Tau Method For The Two-Dimensional Helmholtz Problem Posed On A Rectangular Domain, Gabriella M. Dalton

Mathematics & Statistics ETDs

Within recent decades, spectral methods have become an important technique in numerical computing for solving partial differential equations. This is due to their superior accuracy when compared to finite difference and finite element methods. For such spectral approximations, the convergence rate is solely dependent on the smoothness of the solution yielding the potential to achieve spectral accuracy. We present an iterative approach for solving the two-dimensional Helmholtz problem posed on a rectangular domain subject to Dirichlet boundary conditions that is well-conditioned, low in memory, and of sub-quadratic complexity. The proposed approach spectrally approximates the partial differential equation by means of …

Eigenfunction Restriction Estimates For Curves With Nonvanishing Geodesic Curvatures In Compact Riemannian Surfaces With Nonpositive Sectional Curvatures, Chamsol Park

Mathematics & Statistics ETDs

For 2 ≤ p < 4, we study the Lp norms of restrictions of eigenfunctions of the Laplace-Beltrami operator on smooth compact 2-dimensional Riemannian manifolds. Burq, G\´erard, and Tzvetkov [12], and Hu [21] found eigenfunction restriction estimates for a curve with nonvanishing geodesic curvatures. We will explain how the proof of the known estimates helps us to consider the case where the given smooth compact Riemannian manifold has nonpositive sectional curvatures. For p = 4, we will also obtain a logarithmic analogous estimate, by using arguments in Xi and Zhang [37], Sogge [33], and Bourgain [10]. At the end of this dissertation, we will talk about a future work, which is a follow up study for higher dimensional analogues of the above curve cases.

Sparse Domination Of The Martingale Transform, Michael Scott Kutzler

Mathematics & Statistics ETDs

Linear operators are of huge importance in modern harmonic analysis. Many operators can be dominated by finitely many sparse operators. The main result in this thesis is showing a toy operator, namely the Martingale Transform is dominated by a single sparse operator. Sparse operators are based on a sparse family which is simply a subset of a dyadic grid. We also show the A2 conjecture for the Martingale Transform which follows from the sparse domination of the Martingale Transform and the A2 conjecture for sparse operators.

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Multiple Baseline Interrupted Time Series: Describing Changes In New Mexico Medicaid Behavioral Health Home Patients’ Care, Jessica Reno

Mathematics & Statistics ETDs

In 2016, the CareLink New Mexico behavioral health homes program began enrolling Medicaid recipients with the goal of increasing care coordination, improving access to services, and decreasing long-term costs of care for adults with serious mental illness (SMI) and children with severe emotional disturbance (SED). To evaluate these aims, a retrospective interrupted time series study using Medicaid claims data was designed. First, a comparable subset of non-enrolled individuals was selected from the pool of Medicaid recipients with SMI or SED using propensity score matching. Then, segmented regression was applied to three outcomes: total Medicaid charges, number of outpatient behavioral health …

Optimal Transport Driven Bayesian Inversion With Application To Signal Processing, Elijah F. Perez

Mathematics & Statistics ETDs

This paper will outline a Debiased Sinkhorn Divergence driven Bayesian inversion framework. Conventionally, a Gaussian Driven Bayesian framework is used when performing Bayesian inversion. A major issue with this Gaussian framework is that the Gaussian likelihood, driven by the L2 norm, is not affected by phase shift in a given signal. This issue has been addressed in [1] using a Wasserstein framework. However, the Wasserstein framework still has an issue because it assumes statistical independence when multidimensional signals are analyzed. This assumption of statistical independence cannot always be made when analyzing signals where multiple detectors are recording one event, say …

Applications Of Evidence Theory To High-Consequence Systems Safety, Christina Marie Deffenbaugh

Mathematics & Statistics ETDs

Issues linked to abnormal environments (like high-consequence systems safety, e.g., nuclear weapon components, bridges, apartment buildings, etc.) may have insufficient information to use either classical statistical methods or Bayesian approaches for calculating associated probabilistic risks, so there is often a requirement for another method that can deal with a low-information situation to obtain a risk assessment. Belief/plausibility measures of uncertainty from A. P. Dempster and G. Shafer’s Evidence Theory is one such method. This thesis has two goals. First, a brief discussion on belief/plausibility measures as an application of Evidence Theory will familiarize the audience with its history and how …

Numerical Simulations Of Nonlinear Waves And Their Stability: Stokes Waves And Nonlinear Schroedinger Equation, Anastassiya Semenova

Mathematics & Statistics ETDs

The present work offers an investigation of dynamics and stability of nonlinear waves in Hamiltonian systems. The first part of the manuscript discusses the classical problem of water waves on the surface of an ideal fluid in 2D. We demonstrate how to construct the Stokes waves, and how to apply a continuation method to find waves in close vicinity to the limiting Stokes wave. We provide new insight into the stability of the Stokes waves by identifying previously inaccessible branches of instability in the equations of motion for the fluid. We provide numerical evidence that pairs of unstable eigenvalues of …

From Wave Propagation To Spin Dynamics: Mathematical And Computational Aspects, Oleksii Beznosov

Mathematics & Statistics ETDs

In this work we concentrate on two separate topics which pose certain numerical challenges. The first topic is the spin dynamics of electrons in high-energy circular accelerators. We introduce a stochastic differential equation framework to study spin depolarization and spin equilibrium. This framework allows the mathematical study of known equations and new equations modelling the spin distribution of an electron bunch. A spin distribution is governed by a so-called Bloch equation, which is a linear Fokker-Planck type PDE, in general posed in six dimensions. We propose three approaches to approximate solutions, using analytical and modern numerical techniques. We also present …

Lattice Of Maximal-Primary Ideals In Quadratic Orders, Ryan Bridges

Mathematics & Statistics ETDs

An order is a subring of the ring of integers of an algebraic extension, Peruginelli and Zanardo classified the lattices of orders with prime index inside te ring of integers of quadratic extensions of the rational numbers. The lattices are quite striking and have different layered structure depending on whether the prime is inert, split, or ramified. This thesis considers the orders which have prime power index inside the Gaussian integers. This is a nice generalization of the work of Peruginelli and Zanardo, and succeeds in a few classifications of specific instances of orders derived from inert primes.

"A Comparison Of Variable Selection Methods Using Bootstrap Samples From Environmental Metal Mixture Data", Paul-Yvann Djamen

Mathematics & Statistics ETDs

In this thesis, I studied a newly developed variable selection method SODA, and three customarily used variable selection methods: LASSO, Elastic net, and Random forest for environmental mixture data. The motivating datasets have neuro-developmental status as responses and metal measurements and demographic variables as covariates. The challenges for variable selections include (1) many measured metal concentrations are highly correlated, (2) there are many possible ways of modeling interactions among the metals, (3) the relationships between the outcomes and explanatory variables are possibly nonlinear, (4) the signal to noise ratio in the real data may be low. To compare these methods …

Methods Of Uncertainty Quantification For Physical Parameters, Kellin Rumsey

Mathematics & Statistics ETDs

Uncertainty Quantification (UQ) is an umbrella term referring to a broad class of methods which typically involve the combination of computational modeling, experimental data and expert knowledge to study a physical system. A parameter, in the usual statistical sense, is said to be physical if it has a meaningful interpretation with respect to the physical system. Physical parameters can be viewed as inherent properties of a physical process and have a corresponding true value. Statistical inference for physical parameters is a challenging problem in UQ due to the inadequacy of the computer model. In this thesis, we provide a comprehensive …

Assessing The Validity Of Sentiment Analysis Measures Through Polychoric Correlation, Kelli N. Kasper

Mathematics & Statistics ETDs

Sentiment analysis methods extract the attitude of a text via systematic algorithms. To evaluate the validity of common sentiment analysis methods, we use polychoric correlation to compare computer-mediated methods and human-rated analogues. Our main topics of interest are the internal consistency of the raters' scores, the level of consensus among raters, and how well raters' scores correlate with those given by sentiment analysis methods for randomly collected Twitter data.

Our analysis found that there is good validity for methods that measure negative and positive sentiments in short texts, both in terms of inter-rater consistency and when comparing raters to computer-mediated …

An Improved Method For Spectroscopic Quality Classification, Elizabeth G. Mayer

Mathematics & Statistics ETDs

Spectral quality classification is a vital step in data cleaning before the

analysis of magnetic resonance spectroscopy (MRS) data can be done. This

analysis compares five methods of quality classification; three of these are

legacy methods, Maudsley et al. (2006), Zhang et al. (2018), and

Bustillo et al. (2020), and two newly created methods that used a random forests

classifier (RFC) to inform their classifications. We found that the random forest

classifier was the most accurate at predicting spectra quality (balanced

accuracy for RF of 88% vs legacy of 70%, 72%, or 72%). A

Random-Forests-Informed Filtering method (RFIFM) for quality …

An A Posteriori Error Analysis Of Stationary Incompressible Magnetohydrodynamics, Ari E. Rappaport

Mathematics & Statistics ETDs

Adjoint based a posteriori error analysis is a technique to produce exact error repre- sentations for quantities of interests that are functions of the solution of systems of partial differential equations (PDE). The tools used in the analysis consist of duality arguments and compatible residuals. In this thesis we apply a posteriori error anal- ysis to the magnetohydrodynamics (MHD) equations . MHD provides a continuum level description of conducting fluids in the presence of electromagnetic fields. The MHD system is therefore a multi-physics system, capturing both fluid and electro- magnetic effects. Mathematically, The equations of MHD are highly nonlinear and …

Multilevel Asymptotic Parallel-In-Time Techniques For Temporally Oscillatory Pdes, Nicholas Abel

Mathematics & Statistics ETDs

As the clock speeds of individual processors level off and the amount of parallel resources continue to increase rapidly, further exploitation of parallelism is necessary to improve compute times. For time-dependent differential equations, the serial computation of time-stepping presents a bottleneck, but parallel-in-time integration methods offer a way to compute the solution in parallel along the time domain. Parallel-in-time methods have been successful in achieving speedup when computing solutions for parabolic problems; however, for problems with large hyperbolic terms and no strong diffusivity, parallel-in-time methods have traditionally struggled to offer speedup. While work has been done to understand why parallel-in-time …

Laser Beam Propagation Over Long Distances In Turbulent Media, Justyna O. Sotiris

Mathematics & Statistics ETDs

The propagation of lasers through different media is a broad topic of study and falls under the larger topic of wave propagation. The focus of this thesis is the development and analysis of a numerical computational model of laser beam propagation through a turbulent atmosphere over a long distance. When a beam propagates through a turbulent atmosphere over a distance exceeding several kilometers it is a strong fluctuation propagation. There exist fewer robust methods to demonstrate how strong fluctuations affect the beam. Beam propagation can be described by the Linear Schr\"{o}dinger Equation (LSE). The fluctuations in the refractive index are …

A Statistical Analysis Of The Unm Facets Design Identity & Beliefs Survey Data, Clarissa A. Sorensen-Unruh

Mathematics & Statistics ETDs

The NSF-funded FACETS (Formation of Accomplished Chemical Engineers for Transforming Society, NSF Award 1623105) grant aims to transform the undergraduate engineering experience in the Department of Chemical and Biological Engineering at the University of New Mexico to address attrition within engineering majors, especially among underserved populations (Brainard & Carlin, 1998). The UNM FACETS Design Identity & Beliefs survey, an assessment tool used as part of the research of the grant, generated the dataset used in this study. I performed several different statistical analyses on the dataset, including confirmatory factor analysis (CFA), principal component analysis (PCA), and cluster analysis. The …