Systems Biology Commons^™

Web-Based Arabidopsis Functional And Structural Genomics Resources, Yan Lu, Robert Last

Yan Lu

No abstract provided.

Consequences Of More Extreme Precipitation Regimes For Terrestrial Ecosystems, S. D. Smith, C. Beier, Aimee T. Classen, Melinda D. Smith, Jana L. Heisler, S. W. Leavitt, Alan K. Knapp, D. Briske, Y. Luo, M. Reichstein, J. E. Bell, Philip A. Fay, R. Sherry, Benjamin Smith

Life Sciences Faculty Research

Amplification of the hydrological cycle as a consequence of global warming is forecast to lead to more extreme intra-annual precipitation regimes characterized by larger rainfall events and longer intervals between events. We present a conceptual framework, based on past investigations and ecological theory, for predicting the consequences of this underappreciated aspect of climate change. We consider a broad range of terrestrial ecosystems that vary in their overall water balance. More extreme rainfall regimes are expected to increase the duration and severity of soil water stress in mesic ecosystems as intervals between rainfall events increase. In contrast, xeric ecosystems may exhibit …

Lake Mead National Recreation Area Vegetation Monitoring And Analysis: Year-End Progress Report, October 1, 2007 To September 30, 2008, Margaret N. Rees

Vegetation Monitoring

Executive Summary

• The Weed Sentry program surveyed over 335 miles and 2,610 acres of transportation corridors on federal land in Clark County for incipient populations of exotic plants.
• 18 manuscripts attained in-press or published status and one manuscript was submitted for review this year. Among published manuscripts, are one documenting Sahara mustard germination patterns (Western North American Naturalist), one assessing exotic species distributions in Clark County (Environmental Monitoring and Assessment), and another is a synthesis of burro effects on Mojave Desert vegetation (Environmental Management), and one assessing vegetation in grassy remnants of the Las Vegas Valley (Desert Plants)
• Staff delivered …

Emerging Issues In Forensic Dna Profiling: Databases And Advisory Boards, Dan E. Krane

Biological Sciences Faculty Publications

No abstract provided.

The Prairie Naturalist. Volume 40, No. 3/4 September/December 2008, The Great Plains Natural Science Society

The Prairie Naturalist

WINTERKILL AND BIOMASS OF THE PAINTED TURTLE IN A SOUTH DAKOTA WETLAND. S. G. Platt, Z. Fast Horse, W. Cross, S. Mannel, and T. R. Rainwater

NON-BLACKBIRD AVIAN OCCURRENCE AND ABUNDANCE IN NORTH DAKOTA SUNFLOWER FIELDS. O. A. Schaaf, G. M. Linz, C. Ooetkott, M. W. Lutman, and W. J. Bleier

USING LOCAL KNOWLEDGE AND REMOTE SENSING TO MAP KNOWN AND POTENTIAL PRAIRIE-CHICKEN DISTRIBUTION IN KANSAS. M. E. Houts, R. O. Rodgers, R. D. Applegate, and W. H. Busby

A CASE STUDY OF A SUCCESSFUL LAKE REHABILITATION PROJECT IN SOUTH-CENTRAL NEBRASKA. P. J. Spirk, B. A. Newcomb, and K. O. …

Non-Blackbird Avian Occurrence And Abundance In North Dakota Sunflower Fields, Dionn A. Schaaf, George M. Linz, Curt Doetkott, Mark W. Lutman, William J. Bleier

The Prairie Naturalist

Sunflower fields are well-documented as foraging habitat for fallmigrating blackbirds (Family Icteridae). There is, however, a paucity of information on the use of sunflower fields by non-blackbirds. We assessed non-blackbird use of 12 ripening sunflower fields in the Prairie Pothole Region of central North Dakota. From mid-August to mid-October 2000, we counted 4,129 individual birds, consisting of 22 families and 61 species, in the sample fields and within 5 m of the field edges. We saw the largest number of birds from 18 September to 27 September. The Family Emberizidae (sparrows) accounted for 26% of the species and 20% of …

A Case Study Of A Successful Lake Rehabilitation Project In South-Central Nebraska, Peter J. Spirk, Brad Newcomb, Keith D. Koupal

The Prairie Naturalist

Cottonmill Lake, a 17.4 ha impoundment located in Buffalo County, Nebraska, was a fishery dominated by common carp (Cyprinus carpio). As a result of the poor sportfish populations, angler participation in May and June of 1993 was low (503 ± 210 angler hours) and angler catch rates for all fish species (0.5 ± 0.4 fish/angler hour) was less than desired. In 1995, before rehabilitation, bluegill (Lepomis macrochirus) trap net catch per unit effort (CPUE) was 1.5 ± 0.9, largemouth bass (Micropterus salmoides) catch per hour of electrofishing was 8.0 ± 0.5, and channel catfish (Ictalurus punctatus) …

Nest Site Preference And Nesting Success Of Upland Sandpiper On Grazing Systems In East Central North Dakota-, Blane A. Klemek

The Prairie Naturalist

require ranchers to move their cattle throughout the range from one paddock to another, thereby allowing formerly grazed paddocks to regenerate. This is beneficial in a number of ways: overgrazing is reduced, cattle weight-gains are improved, suitable nesting cover for ground nesting birds is produced, and the overall health of the grassland is enhanced (Sedivec and Barker 1991). The objectives of my study were to investigate nesting success of the upland sandpiper as a function of grazing regime. Specifically, I was interested in comparing nesting success between RGS and non-rotational grazing systems (NRGS) and to examine relationships between nest site …

Using Local Knowledge And Remote Sensing To Map Known And Potential Prairie-Chicken Distribution In Kansas, Michael E. Houts, Randy D. Rodgers, Roger D. Applegate, William H. Busby

The Prairie Naturalist

The greater prairie-chicken (Tympanuchus cupido) and lesser prairie-chicken (Tympanuchus pallidicinctus) have experienced considerable fluctuations in their range and distribution over time. Having current range maps would help wildlife managers and policy makers with decisions regarding prairie-chicken habitat. To create an updated and accurate map of the Kansas prairie-chicken range, a two-pronged approach was implemented. First, a map of potential habitat was created by using known habitat preferences and avoidance factors. Second, a preliminary map showing the distribution of greater and lesser prairie-chickens was created and mailed to regional experts for comments and edits. The returned edits …

Semi-Melanistic White-Tailed Deer In Northern Wisconsin, Christopher N. Jacques, Keith R. Mccaffery, Jonathan Jenks, John T. Baccus

The Prairie Naturalist

Melanistic color morphs of white-tailed deer (Odocoileus virginianus) are differentiated from other recognized color morphs by having uniform black hairs on the dorsal surface with subdued black hairs on the ventral surface, dark face and ears, a distinctive mid-dorsal stripe extending from the head to the apex of the tail, and a tail with black dorsally and white ventrally (Baccus and Posey 1999). Melanism results from the overproduction of the skin pigment melanin and is considered rare in white-tailed deer populations (Severinghaus and Cheatum 1956, Sauer 1984, Smith et al. 1984). Semi-melanistic deer have the same dark pelage …

The Prairie Naturalist 2008, Volume 40: Reviewers, Author Index, & Subject Index

The Prairie Naturalist

No abstract provided.

Shifts In Southern Wisconsin Forest Canopy And Understory Richness, Composition, And Heterogeneity, David A. Rogers, Thomas P. Rooney, Daniel Olson, Donald M. Waller

Biological Sciences Faculty Publications

We resurveyed the under- and overstory species composition of 94 upland forest stands in southern Wisconsin in 2002–2004 to assess shifts in canopy and understory richness, composition, and heterogeneity relative to the original surveys in 1949–1950. The canopy has shifted from mostly oaks (Quercus spp.) toward more mesic and shade-tolerant trees (primarily Acer spp.). Oak-dominated early-successional stands and those on coarse, nutrient-poor soils changed the most in canopy composition. Understories at most sites (80%) lost native species, with mean species density declining 25% at the 1-m² scale and 23.1% at the 20-m² scale. Woody species have increased …

Winterkill And Biomass Of The Painted Turtle In A South Dakota Wetland, Steven G. Platt, Zannita Fast Horse, Warren Cross, Sylvio Mannel, Thomas R. Rainwater

The Prairie Naturalist

Winterkill occurs when drought conditions expose hibernating turtles to desiccation and lethaly cold temperatures. Winterkill is thought to represent a major source of mortality in northern populations of the painted turtle (Chrysemys picta), but few field observations are available. We herein reported on catastrophic winterkill among western painted turtle (C. pieta bellii) at Limestone Butte Lake (LBL) in western South Dakota during the winter of 2003-2004. Additionally, we used the carcasses of winterkilled turtles (n = 86) to estimate the standing crop biomass of the painted turtle at LBL (0.6 kg/ha). This was the only estimate …

Paddlefish Egg Deposition In The Lower Yellowstone River, Montana And North Dakota, Shannon E. Miller, Dennis L. Scarnecchia, Steven R. Fain

The Prairie Naturalist

We used passive egg collectors during May, June, and July of2003 and 2004 in the lower 50 river kiiometers (rkm) of the Yellowstone River, eastern Montana and western North Dakota, to detect egg deposition by spawning paddle fish (Polyodon spathula). Sampling yielded 292 eggs (46 in 2003 and 246 in 2004). All egg collections in 2003 occurred on the descending limb of the spring hydrograph but 99% of egg collections in 2004 occurred before the spring hydrograph began to descend. Catch-per-unit-effort (CPUE) in 2004 was about four times that of 2003. A combination of river conditions, in addition …

Lake Mead National Recreation Area Vegetation Monitoring And Analysis: Quarterly Progress Report, April 1, 2008 To June 30, 2008, Margaret N. Rees

Vegetation Monitoring

Executive Summary

• The Weed Sentry program surveyed over 182 miles of transportation corridors on federal land in Clark County for incipient populations of exotic plants.
• Five manuscripts attained published or in-press status this quarter. The published manuscripts are (1) assessing vegetation in grassy remnants of the Las Vegas Valley (Desert Plants), (2) assessing exotic species distributions in Clark County (Environmental Monitoring and Assessment), (3) a synthesis of burro effects on Mojave Desert vegetation (Environmental Management), and (4) examining canopy-tree influences along a soil parent material gradient in (Journal of the Torrey Botanical Society).
• Staff delivered eight presentations this quarter at …

Synergism Between Entomopathogenic Nematodes And Bacillus Thuringiensis Crops: Integrating Biological Control And Resistance Management, Aaron J. Gassmann, S. Patricia Stock, Mark S. Sisterson, Yves Carriere, Bruce E. Tabashnik

Aaron J. Gassmann

The past decade has witnessed a continual increase in the use of crops genetically modified to produce insecticidal toxins from the bacterium Bacillus thuringiensis (Bt). This presents the challenge of designing agricultural systems to manage pests and the evolution of resistance to Bt. We tested whether entomopathogenic nematodes might act synergistically with Bt crops by killing pests in non-Bt refuges and by increasing the fitness costs of resistance to Bt. We also tested whether insect mortality and fitness costs were affected by the cotton phytochemical gossypol. The entomopathogenic nematode Steinernema riobrave increased the fitness cost of Bt resistance, indicating that …

Limnological Assistance For The Lake Mead National Recreation Area In Meeting The Challenge Of The Water 2025 Initiative: Annual Report, Period Ending May 31, 2008, Margaret N. Rees

Limnological Studies

Hiring: Limnologist Dr. Wai Hing (David) Wong was hired and officially reported to work on 5/15/2008.

Project 1 and Project 2: Dr. Wong has commenced work on Projects 1 and 2.

Project 3: Dr. Wong has commenced work on Project 3. A comprehensive zebra/quagga mussel bibliography has been completed and published to the 100th Meridian Web site. Six interagency, multi-disciplinary quagga mussel meetings have been held. A quagga mussel substrate project has been initiated and, through the coordination efforts of this project, two other studies have been selected and refined to help determine the ecological impacts of quagga mussel infestation …

Limnological Assistance For The Lake Mead National Recreation Area In Meeting The Challenge Of The Water 2025 Initiative: Quarterly Progress Report, Period Ending: April 1, 2008, Margaret N. Rees

Limnological Studies

Hiring: A decision is anticipated in the upcoming weeks regarding the hiring of a limnologist. Two candidates were selected from among three qualified applicants for telephone interviews; they were subsequently interviewed in-person.

Project 1: Review of the draft Boulder Basin Adaptive Management Plan is on-going. Meetings of the Systems Conveyance and Operations Program (SCOP) Technical Advisory Teams were attended.

Project 2: Development of a white paper expressing the joint needs of the entities involved in Water 2025 projects is on-going; scientific review of data and reports related to bacteria in high-use areas of Lake Mead is underway.

Project 3: Discussions …

Aquatic And Terrestrial Habitat Use Of The Australian Freshwater Turtle, Chelodina Expansa, Ellyn Ercolano

Independent Study Project (ISP) Collection

Organisms select habitats that provide the best possible resources necessary to their survival. Organisms may occupy and utilize a home range which requires specific selection of components in their available habitat. Monitoring the threats to a species within their habitats is a crucial tool in conservation and management practices. The Murray-Darling Basin of south-eastern Australia has suffered alterations to its hydrology, flow regime, catchment size and usage, flooding cycles, as well as from vast removal of vegetation in the floodplains since European settlement in Australia in the mid-nineteenth century. Knowledge of the habitat use of a focal species can guide …

New Connections Across Pathways And Cellular Processes: Industrialized Mutant Screening Reveals Novel Associations Between Diverse Phenotypes In Arabidopsis, Yan Lu, Linda Savage, Imad Ajjawi, Kathreen Imre, David Yoder, Christoph Benning, Dean Dellapenna, John Ohlrogge, Katherine Osteryoung, Andreas Weber, Curtis Wilkerson, Robert Last

Yan Lu

No abstract provided.

Lake Mead National Recreation Area Vegetation Monitoring And Analysis: Quarterly Progress Report, January 1— March 31, 2008, Margaret N. Rees

Vegetation Monitoring

Executive Summary

• The Weed Sentry program surveyed 104 miles of transportation corridors on federal land in Clark County for incipient populations of exotic plants.
• Seven manuscripts attained in-press or published status and two manuscripts were submitted for review this quarter. Among other in-press manuscripts, are one documenting Sahara mustard germination patterns (Western North American Naturalist), one assessing exotic species distributions in Clark County (Environmental Monitoring and Assessment), and another is a synthesis of burro effects on Mojave Desert vegetation (Environmental Management).
• Staff delivered four presentations this quarter at conferences or at agency meetings. Twenty-six Las Vegas bearpoppy sites were assessed …

The Prairie Naturalist. Volume 40, No. 112 March/June 2008, The Great Plains Natural Science Society

The Prairie Naturalist

LOW REPRODUCTIVE SUCCESS OF MALLARDS IN A GRASSLAND-DOMINATED LANDSCAPE IN THE SANDHILLS OF NEBRASKA. J. A. Walker, Z. J. Cunningham, M. P. Vrtiska, S. E. Stephens, and L. A. Powell

USE OF PASSIVE INTEGRATED TRANSPONDERS IN HATCHLING TEXAS HORNED LIZARDS. S. E. Henke

INFLUENCE OF TEMPERATURE AND DISCHARGE ON REPRODUCTIVE TIMING OF COMMON CARP IN A NORTHERN GREAT PLAINS RIVER. T. Resseguie and S. Kelsch

RAPTOR USE OF ARTIFICIAL PERCHES AT NATURAL AREAS, CITY OF FORT COLLINS, COLORADO. G. Witmer, M. Pipas, P. Burke, D. Rouse, D. Dees, and K. Manci

WEST NILE VIRUS ANTIBODIES IN BREEDING NORTH DAKOTA ICTERIDS. …

Raptor Use Of Artificial Perches At Natural Areas, City Of Fort Collins, Colorado, G. W. Witmer, Michael Pipas, Patrick Burke, David Rouse, Donna Dees, Karen Manci

The Prairie Naturalist

The black-tailed prairie dog (Cynomys ludovicianus) remains a critical element of the prairie ecosystem even though its numbers and occupied range have declined dramatically since the arrival of Europeans in North America (Antol in et al. 2002). Prairie dog colonies are used by many species of wildlife and help maintain high levels of biodiversity (Kotliar et al. 1999). In the urban-suburban setting, the occurrence of prairie dog colonies also provides opportunities for wildlife viewing and environmental education. Unfortunately, prairie dogs also can come into conflict with humans, especially in the urban-suburban setting, where they cause vegetation and property …

Breeding By The Snowy Plover In North Dakota And South Dakota, Carol Aron, Paul Van Ningten, Michael Rabenberg, Cheryl Jacobs, Greg Pavelka, Ricky D. Olson

The Prairie Naturalist

The snowy plover (Charadrius alexandrinus) is a small shorebird that breeds on unvegetated beaches along coastlines, rivers, and alkaline lakes. In North America, its breeding distribution extends along the coasts of California, Oregon, and southern Washington, where the population is listed as federally threatened (USFWS 1993), and an interior population occurs on wetlands in western and central states and central Mexico (Page et al. 1995). There have been rare breeding reports in Montana, Wyoming, and Saskatchewan (Page et al. 1995), but no documented breeding records in North Dakota or South Dakota. However, the United States Army Corps of Engineers reported …

Review Of Basic Texas Birds: A Field Guide By Mark W. Lockwood, Thomas M. Langschied

The Prairie Naturalist

Texas has an incredible diversity of birds. This diversity is a result of its geographic location, size, and diversity of habitats. Given this wealth of birds, there is a wonderful opportunity in Texas for both residents and visitors alike to learn and appreciate the birdlife found there. Basic Texas Birds has been written to provide a foundation for anyone who is either new to bird-watching or has been bird-watching casually for several years. The book covers 161 commonly occurring birds in Texas and includes an additional 23 species that are considered Texas specialty birds, those that occur regularly in Texas …

West Nile Virus Antibodies In Breeding North Dakota Icterids, Jennifer L. Newbrey, Wendy L. Reed

The Prairie Naturalist

Exotic infectious diseases can have devastating effects on the distribution and abundance ofnaYve wildlife species (Friend et al. 2001). West Nile Virus (WNV) is an exotic disease that was introduced into North America in 1999 and has resulted in the deaths of tens of thousands of birds (Marra et al. 2004). The natural cycle of WNV involves Culex spp. mosquitoes as principle vectors and birds as principle hosts, although humans, horses, and other mammals can become incidental hosts (Lanciotti et al. 2000). Because the virus can be fatal, outbreaks have become a national health concern for the human population, an …

Influence Of Temperature And Discharge On Reproductive Timing Of Common Carp In A Northern Great Plains River, Tim Resseguie, Steve Kelsch

The Prairie Naturalist

Reproductive timing of common carp (Cyprinus carpio) was examined in the Red River of the North and compared with environmental factors that might have triggered spawning during 1999 and 2000. We estimated spawn dates for individual common carp larvae collected in the drift by back-calculating from datc of capture and by accounting for developmental stage at capture and water temperature during the period of egg incubation. Reproductive timing was compared with discharge and water temperature to determine which of these likely might be a synchronizing cue for spawning of common carp in the Red River basin. In both years of …

Low Reproductive Success Of Mallards In A Grassland-Dominated Landscape In The Sandhills Of Nebraska, Johann A. Walker, Zach J. Cunningham, Mark P. Vrtiska, Scott E. Stephens, Larkin Powell

The Prairie Naturalist

The Sandhills of Nebraska comprise approximately 5,000,000 ha of native grassland interspersed with numerous groundwater-fed wetlands. A substantial population of the mallard (Anas platyrhynchos) nests in this region. Previous investigations of nest survival probability of ducks in the Sandhills have estimated surprisingly low rates of nest survival for a grassland-dominated landscape. These investigations were conducted on public lands and most nest searching took place near wetlands where activity of nest predators might be highest. We predicted that mallards would nest at varying distances from wetlands and that survival probability of a representative sample of duck nests would increase …

Review Of Roger Tory Peterson: A Biography By Douglas Carlson, Laura Erickson

The Prairie Naturalist

August 28, 2008, marks the centennial of Roger Tory Peterson's birth, and books related to the most prominent naturalist of the twentieth century have been sprouting up everywhere. I was disappointed that Douglas Carlson shied away from examining Peterson's personal life to provide insights into the forces and relationships that shaped, and were shaped by, this man so consumed with birds. Instead, Carlson focuses almost entirely on Peterson's work, writing, "Because his death is so recent, there are many who have a personal investment in his story; beyond a request for an interview, no attempts have been made to invade …

Review Of Oology And Ralph's Talking Eggs By Carrol L. Henderson, Kristin R. Johnson

The Prairie Naturalist

Ralph Handsaker was an Iowan farmer whose "ravenous curiosity" (page 4) about the natural world inspired him to become an oologist, or egg collector. This book tells the story of Handsaker's eggs, contained in two large cabinets that remained hidden in the living room of his boarded-up house after his death in 1969, until they were rediscovered in 2003 and shown to the author, wildlife conservationist, and photographer, Carrol Henderson. Ralph's eggs can "talk" by virtue of Henderson's chronicle-using the eggs as guides-of not only Ralph's own passion for natural history and egg collecting, but also the history of conservation …