Marine Biology Commons^™

Interactions Between Sediment Mechanical Structure And Infaunal Community Structure Following Physical Disturbance, William Cyrus Roger Clemo

<strong> Theses and Dissertations </strong>

Shallow, river-influenced coastal sediments are important for global carbon storage and nutrient cycling and provide a habitat for diverse communities of invertebrates (infauna). Elevated bed shear stress from extreme storms can resuspend, transport, and deposit sediments, disrupting the cohesive structure of muds, and sorting and depositing sand eroded from beaches. These physical disruptions can also resuspend or smother infauna, decreasing abundances and changing community structure. Infaunal activities such as burrowing, tube construction, and feeding can impact sediment structure and stability. However, little is known about how physical disturbance impacts short and long-term sediment habitat suitability and whether disturbance-tolerant infauna influence …

Connecting Social And Ecological Systems In Small-Scale Fisheries In The Philippines, Sara Eisler Marriott

Dissertations

Nearly 50% of all marine fish capture in the Philippines is from artisanal fisheries, most of which is un- or under-reported. As in many emerging nations around the world, the Philippines cannot fully address overfishing by managing only half of the catch that comes from commercial fisheries. Marine reserves are a popular governance strategy for conservation and of growing interest for fisheries management. Many marine reserves in the Philippines, however, are not considered effective. In 2014, Rare, an international NGO, implemented a community-based management program to increase the effectiveness of the marine reserves, and while it found biomass increased, there …

Assessing The Effectiveness Of Integrated Multi-Trophic Aquaculture For Growing West Coast Venus Clams, Avery Wallace

Theses

With demand for sustainable sources of seafood on the rise, California is looking to expand aquaculture with a focus on innovative culturing methods and use of native or resident species. Therefore, this study examined the potential for culturing native North American west coast venus clams (Chione californiensis and Chione undatella) using integrated multi-trophic aquaculture (IMTA). An ITMA approach was chosen because it is a culture method that uses species from different but functionally complementary trophic levels that have been found to reduce the potential negative effects of traditional monoculture. California sea cucumber (Parastichopus californicus) and the seaweeds red ogo (Gracilaria …

Understanding The Impacts Of Anthropogenic Effects An Habitat Variability Interactions On Maine's Rocky Intertidal Ecosystem, Laura Braun

Electronic Theses and Dissertations

The rocky intertidal ecosystem is an important ecological and cultural aspect of the picturesque Maine coast, playing a vital role in not only Maine’s coastal ecosystem, but also to Maine’s economy. It’s distinct community structure along the sharp elevational gradient and the presence of daily stressors (wave action, heat, and desiccation), make the rocky intertidal ecosystem an important model ecosystem to monitor for effects from anthropogenic impacts. In this thesis, I describe attempts to monitor and understand the impacts of two of these anthropogenic impacts on this system: climate change and industrial harvesting of Ascophyllum nodosum along Maine’s coast. For …

Larval Ecology Of Atlantic Bluefin Tuna (Thunnus Thynnus): New Insights From Otolith Microstructure, Biotic, And Abiotic Analyses From The Gulf Of Mexico And Mediterranean Sea, Estrella Malca

All HCAS Student Capstones, Theses, and Dissertations

Atlantic bluefin tuna (ABT), Thunnus thynnus, spawn in the Gulf of Mexico (GoM) and the Mediterranean Sea (MED). Spawning occurs within narrow temporal and environmental parameters. Efforts to characterize growth of ABT in wild conditions revealed a wide range of growth variability during the early life stages. This series of studies examined potential biotic and abiotic influences of larval growth from seven ABT cohorts, and identified several key drivers of growth for this commercially valuable species. A detailed investigation of larval dynamics using otolith microstructure was conducted as follows. First, companion growth curves and stable isotope analysis from the same …

Developing A Miniature Smart Boat For Marine Research, Michael Isaac Eirinberg

Computer Engineering

This project examines the development of a smart boat which could serve as a possible marine research apparatus. The smart boat consists of a miniature vessel containing a low-cost microcontroller to live stream a camera feed, GPS telemetry, and compass data through its own WiFi access point. The smart boat also has the potential for autonomous navigation. My project captivated the interest of several members of California Polytechnic State University, San Luis Obispo’s (Cal Poly SLO) Marine Science Department faculty, who proposed a variety of fascinating and valuable smart boat applications.

Climate-Driven Stock Shifts And Expansions In The U.S. Northeast Shelf: Identifying Challenges, Opportunities, And Barriers Through Fishermen And Manager Perspectives, Sophie A. Swetz

All Theses And Dissertations

Climate-driven warming in the U.S. Northeast Shelf (NES) has led to changes in the spatial distributions of many marine resources. Shifts and expansions of commercially important fish stocks pose major challenges to fishermen and fisheries managers in this region. American lobster (Homarus americanus) in the Gulf of Maine (GOM) is one of these impacted stocks and is projected to continue its shift towards more northern and offshore areas. Continued ocean warming could potentially reduce the GOM lobster stock by up to 60% over the next several decades. Given Maine’s reliance on its lobster fishery—which contributes over 80% of …

A Spatial Assessment Of Impacts To The Flats Fishery By Recreational Boating In The Florida Keys National Marine Sanctuary, Kristin Anderson

All HCAS Student Capstones, Theses, and Dissertations

The recreational flats fishery in the Florida Keys is a significant component of the marine resource-based economy, exceeding $465 million (USD) in annual economic impact. Permit (Trachinotus falcatus), bonefish (Albula vulpes), and tarpon (Megalops atlanticus) are the three main species targeted by flat fishers. Those participating in this fishery generally practice catch-and-release angling therefore, the fishery is considered a more sustainable marine use compared to more traditional commercial fisheries. However, with population and tourism rising in South Florida, the fishery is increasingly threatened by habitat degradation and user conflicts. Ongoing revisions to the Florida …

Polycyclic Aromatic Hydrocarbons And The Microbiomes Of Two Benthic Species, Samantha Ells

Master's Theses

The presence of oil has been shown to affect the microbiomes of the water column, sediments, and organisms, both by altering the diversity and the composition of those microbial communities. If the microbiome is altered it may no longer provide benefits to its host organism, impacting its ability to survive. Thus, it is important to understand the effects of large-scale contamination events including the Deepwater Horizon oil spill. This study set out to examine the effects of oil exposure on the microbiome of two benthic species, southern flounder (Paralichthys lethostigma) and eastern oysters (Crassostrea virginica) to further understand the effects …

Incorporating Life Into Living Shorelines: Can Gulf Ribbed Mussels Reduce Shoreline Erosion And Enhance Restoration Practices?, Jordan Logarbo

LSU Master's Theses

The gulf ribbed mussel (Geukensia granosissima) exists throughout the Gulf of Mexico and influences biotic and abiotic environmental attributes as an ecosystem engineer. Ribbed mussels are an important component of marsh ecosystems providing services including filtering particulate matter, depositing and transforming nutrients in the system, increasing soil strength via byssal threads and providing structure via their shells.

The spatial distribution of mussels along the marsh edge of Sister Lake, LA was investigated via a broad survey of 150 sites, in relation to elevation, exposure and vegetation percent cover. This survey was followed by a second survey at a …

Optimization Of Grow-Out Of Bouldering Coral Microfragments: Land Vs. Offshore Nursery, Ashlee A. Steinberg

All HCAS Student Capstones, Theses, and Dissertations

Corals along the Florida Reef Tract and the wider Caribbean have been declining for decades. Low densities of adult colonies hinder the ability of corals to replenish themselves through sexual reproduction, thus reef managers are focusing on restoration actions that increase coral biomass. Microfragmentation is a way to quickly increase the biomass of bouldering corals by cutting the coral into small pieces which forces the coral to allocate its resources away from reproduction and back into growth, increasing its growth rate. This study assessed the optimal location for grow-out (land vs. offshore nursery) and its synergy with size of fragment …

Conservation, Sharks, And The Tragedy Of The Commons: Achieving Human-Nature Holism, Fiona Melady

Regis University Student Publications (comprehensive collection)

Environmental ethics originates from the idea that the relationship between humans and non-human nature should be considered morally. How we deal with environmental issues depends on our perception of human-environment relationships. Many view nature as something separate from themselves to own, use, and exploit for human benefit; others view nature as something of which humans are a part and having an intrinsic value aside from practicality or usefulness. This thesis examines human-environment relationships through anthropocentrism and ecocentrism and advocates for balancing the two perspectives. Furthermore, this thesis examines the importance of marine environmental conservation, particularly sharks, and how transitioning towards …

New England’S Underutilized Seafood Species: Defining And Exploring Marketplace Potential In A Changing Climate, Amanda Davis

Masters Theses

New England’s seafood industry has been searching for opportunities to diversify their landings and build resilience as it faces socio-economic challenges from a changing climate. Developing markets for underutilized species is one way the New England community could help their seafood industry build resilience. This thesis identified New England’s underutilized fish species and explored their marketplace potential by examining their availability in a changing climate, current availability to consumers, and consumers’ responses. In Chapter I, I account how New England’s seafood preferences have changed over time. In Chapter II, I identify New England’s seven underutilized seafood species: 1) Acadian redfish …

Global Conservation Status Of Croaker And Drum (Family: Sciaenidae) And Role Of The Maw Trade, Claire E. Gorman

Biological Sciences Theses & Dissertations

Understanding threats and drivers of extinction risk is critical to conserving marine biodiversity. Although marine bony fishes are some of the most diverse and abundant vertebrates in the world, overexploitation is the major threat to these taxa. Species in the family Sciaenidae are important marine resources in many parts of the world, supporting small- and large-scale fisheries for consumption and the international maw (dried swimbladder) trade. Sciaenids exhibit a diverse array of life history characteristics, such as high fecundity, large body size, formation of spawning aggregations, and longevity. Some characteristics increase their susceptibility to anthropogenic stressors. Despite being ecologically and …

Prioritizing The Largest, Oldest Corals For Disease Intervention In A Coral Disease-Ravaged Area: Southeast Florida Coral Reef Ecosystem Conservation Area, Alysha Brunelle

All HCAS Student Capstones, Theses, and Dissertations

Coral diseases appear to be more devastating than ever before. When a virulent disease ravages a coral ecosystem, it can significantly change the population’s demographics and cause local extinctions. Disease intervention response during such an event is impossible at a landscape scale, therefore priorities must be considered. Saving the largest, oldest colonies of reef-building species is a good choice due to their high fecundity and ecological function. Their size, as a proxy for age, is an indicator of their resistance to previous perturbations which may indicate higher fitness. Their size also provides habitat to many organisms and wave resistance in …

Bull Kelp (Nereocystic Lutkeana) Restoration And Management In Northern California, Olivia Johnson

Master's Projects and Capstones

Northern California’s coastal marine ecosystems support one of the most productive and biodiverse habitats on the planet. Bull kelp forests (Nereocystic lutkeana) form habitats for an abundance of marine mammals, sea bird, fish, and invertebrates. In recent years, compounding ecological and climatic factors have disrupted the balance of the bull kelp forests and led to an unprecedented loss of bull kelp biomass and canopy cover. These areas that are typically teeming with marine life have shifted into a stable state of sea urchin barrens due to over grazing of bull kelp by purple sea urchins (Strongylocentrotus pupuratus). These sea urchin …

An Ecopath With Ecosim Analysis On Offshore Petroleum Platform Influences On Gulf Of Mexico Red Snapper, Valentin Gomez

LSU Master's Theses

Offshore oil and gas platforms have had a significant presence in the Gulf of Mexico since the 1950s. An important secondary function of these structures is that they provide artificial habitat to fisheries, most notably Red snapper. Policy changes intended to reduce the risk associated with aging infrastructure have reduced the number of standing platforms from 4044 to 1867 from 2001 to 2018. The effect this loss of habitat has on Red snapper was tested by creating three scenarios of platform changes and modeling the perturbation from 2005 to 2050. The simulation was accomplished using the ecological model Ecopath with …

The Vezo Communities And Fisheries Of The Coral Reef Ecosystem In The Bay Of Ranobe, Madagascar, Shane Abeare

University of New Orleans Theses and Dissertations

Madagascar, a country whose extraordinary levels of endemism and biodiversity are celebrated globally by scientists and laymen alike, yet historically has received surprisingly little research attention, is the setting of the present dissertation. Here, I contribute to the need for applied research by: 1) focusing on the most intensely fished section of the Toliara Barrier Reef, the Bay of Ranobe; 2) characterizing the marine environment, the human population, and the fisheries; and 3) collecting the longest known time-series of data on fisheries of Madagascar, thereby providing a useful baseline for future analyses. In Chapter 1, the bathymetry of the Bay …

Analysis Of Temperature And Salinity Effects On Growth And Mortality Of Oysters (Crassostrea Virginica) In Louisiana, Troy Sehlinger

University of New Orleans Theses and Dissertations

Salinity (S) and temperature (T) control every facet of the eastern oyster (Crassostrea virginica) life cycle, principally reproduction, development, growth, and mortality. Previous studies conducted in in the Breton Sound (BR) and Barataria (BA) estuaries have reported differences in growth and mortality rates between the basins. In the present study, environmental conditions were synchronized to compare growth and mortality rates between basins at similar combinations of T and S. Results indicate that when T and S are the same (synchronized), seasonal oyster growth and mortality rates differ between BR and BA. Seasonal analyses revealed that as salinities increased …

Can The Marsh Migrate? Factors Influencing The Growth Of Spartina Patens In Upland Soil, Tessa M. Dowling

All Theses And Dissertations

Although high elevation salt marsh plants, such as Spartina patens (salt hay) can cope with accelerated sea level rise by migrating inland, it is not well known whether environmental factors, such as soil, plant litter, and salinity, will influence the ability of S. patens to colonize upland forest areas. For one growing season, I tested how S. patens vegetative growth (the final number of stems, aboveground stem biomass, and belowground rhizome biomass) and reproduction (presence of flowers) responded to upland or marsh soil, the presence or absence of plant litter, and 4.5ppt or 14.5ppt salinity levels. In order to determine …

Desalination Concentrate Disposal: Ecological Effects And Sustainable Solutions, Ryan Hanley

Global Honors Theses

Freshwater availability is a growing global concern, and desalination is often presented as the solution, but from this important technology comes issues of toxic waste. Ecosystems are delicate areas that contain species adapted to that specific location, and any chemical or physical changes can disrupt the fitness of species. The concentrate byproduct waste from desalination plants is toxic to species if the concentrate is not compatible with the receiving water body. A critical review of scientific articles, industry-leading books, conversations with industry experts, and information from the American Membrane Technology Association conference was used to analyze the current knowledge. Species …

Spatio-Temporal Dynamics Of Atlantic Cod Bycatch In The Maine Lobster Fishery And Its Impacts On Stock Assessment, Robert E. Boenish

Electronic Theses and Dissertations

Of the most iconic fish species in the world, the Atlantic cod (Gadus morhua, hereafter, cod) has been a mainstay in the North Atlantic for centuries. While many global fish stocks have received increased pressure with the advent of new, more efficient fishing technology in the mid-20^th century, exceptional pressure has been placed on this prized gadoid. Bycatch, or the unintended catch of organisms, is one of the biggest global fisheries issues. Directly resulting from the failed recovery of cod in the GoM, attention has been placed as to possible sources of unaccounted catch. Among the most …

Impacts Of Educational Programming At Dolphins Plus On Visitor Knowledge, Attitude And Behavior, Carley Rice

Masters Theses, 2010-2019

Zoos, aquariums, and similar institutions have been transitioning for many years from venues of entertainment to institutions of informal environmental education. This transition has led to these institutions claiming missions of conservation and education. The conservation education impacts of zoos and aquariums are not well understood. The literature is limited and at times inconclusive. Claims of conservation and education should be formally evaluated through survey research projects to determine validity. These types of studies will shed light on these institutions and aid in improving educational programs to best benefit conservation of wildlife, habitats and the environment. The purpose of this …

The Effects Of Ocean Acidification And Reduced Oxygen On The Behavior And Physiology Of Juvenile Rockfish, Corianna H. Flannery

Cal Poly Humboldt theses and projects

As climate change progresses, the frequency and duration of upwelling events that bring low pH, low dissolved oxygen (DO) water to nearshore habitats are expected to increase. In addition, long-term global changes in ocean pH and DO are expected to occur within the next few decades to centuries. Locally, there have been documented reductions in near-shore pH along with the expansion of oxygen minimum zones within the California Current System. However, very few studies have investigated the potential interactive effect of these stressors on temperate reef fish. For this thesis, two sets of laboratory experiments were conducted to determine the …

Historical Change Of Seagrasses In The Mississippi And Chandeleur Sounds, Linh Thuy Pham

Dissertations

Seagrasses are important coastal resources facing numerous stressors, and losses have been documented from local to global assessments. Under the broad theme of habitat loss and fragmentation, a study of historical change in total area and landscape configuration of seagrasses in the Mississippi and Chandeleur Sounds was conducted. Mapping data was collated from a multitude of previous projects from 1940 to 2011.

Comparisons of seagrass area among various studies that used different mapping methods can result in overestimation of area change and misleading conclusions of change over time. The vegetated seagrass area (VSA) data were generalized to a common resolution …

Larval Rockfish Diversity Abundance Dynamics In Association With A Marine Protected Area In The Southern California Bight, Dustin Chen

Theses

Marine protected areas (MPAs) are areas aimed at protecting natural and cultural resources that are often proposed as a way to alleviate the effects of overfishing on populations of targeted species; these areas have varying degrees of fishing and recreational use restrictions. In order to assess MPA efficacy, it is important to determine the mechanisms by which the presence of MPAs affect reproductive output within and potentially even beyond their boundaries. I attempted to address this through studying the responses of rockfish (Sebastes spp.) larval abundances to the presence of the Cowcod Conservation Areas (CCAs) located within the Southern California …

Mapping The Spatial-Temporal Variation In Ras Ghanada Seagrass Meadows And Sand Shoals Between 1996, 2006 & 2012, Ryan Brookbank

HCNSO Student Theses and Dissertations

Seagrass meadows offshore Ras Ghanada, as elsewhere, are an important component to the ecosystem providing numerous benefits to both aquatic and human life. This work focused on mapping the spatial and temporal distribution of seagrass meadows offshore Ras Ghanada using aerial photography acquired in 1996 and high-resolution satellite images captured in 2006 and 2012. The movements of sand shoals were also tracked, so as to further explain the dynamics of this ecosystem, as it is the area between the shoal crests that hosts the best developed seagrass meadows. The natural limiting factor for seagrass on the Ras Ghanada coastal shelf …

Distribution And Condition Of Stony Corals In The Veracruz Reef System National Park: A Management Perspective, Mauricio López Padierna

HCNSO Student Theses and Dissertations

The Veracruz Reef System (VRS) is located in the southwestern Gulf of Mexico. It is comprised of 28 coral reefs in various stages of development and conservation. They are protected under the Parque Nacional Sistema Arrecifal Veracruzano National Park created in 1992. There are many threats to the reefs of the VRS, including the Port and city of Veracruz, which hosts half a million inhabitants and Mexico’s oldest active port. The inhabitants of Veracruz have used reef resources for thousands of years, as evidenced in archaeological sites on Sacrificios island, and constructions throughout the city, most notably in the San …

Multiscale Habitat Suitability Modeling For Canary Rockfish (Sebastes Pinniger) Along The Northern California Coast, Portia N. Saucedo

Cal Poly Humboldt theses and projects

Detailed spatially-explicit data of the potential habitat of commercially important rockfish species are a critical component for the purposes of marine conservation, evaluation, and planning. Predictive habitat modeling techniques are widely used to identify suitable habitat in un-surveyed regions. This study elucidates the predicted distribution of canary rockfish (Sebastes pinniger) along the largely un-surveyed northern California coast using data from visual underwater surveys and predictive terrain complexity covariates. I used Maximum Entropy (MaxEnt) modelling software to identify regions of suitable habitat for S. pinniger greater than nine cm in total length at two spatial scales. The results of …

Ecosystem Services Of Restored Oyster Reefs In A Chesapeake Bay Tributary: Abundance And Foraging Of Estuarine Fishes, Bruce William Pfirrmann

Dissertations, Theses, and Masters Projects

Oyster reef restoration may enhance the production of ecologically or economically important fish species, an ecosystem service, by providing refuge and foraging habitat. Predicting the effects of oyster habitat restoration on fisheries production in Chesapeake Bay requires a better understanding of fish habitat use, trophic dynamics, and the processes leading to production on a habitat-scale. The objective of this thesis was to evaluate the influence of restored subtidal oyster reefs on the abundance and foraging patterns of mobile estuarine fishes. Specifically, I compared the 1) abundance, 2) stomach fullness, 3) diet composition, and 4) daily consumption rate of fishes collected …