Biology Commons^™

Insights From Comparative Analyses Of Aging In Birds And Mammals, Robert Ricklefs

Biology Department Faculty Works

Many laboratory models used in aging research are inappropriate for understanding senescence in mammals, including humans, because of fundamental differences in life history, maintenance in artificial environments, and selection for early aging and high reproductive rate. Comparative studies of senescence in birds and mammals reveal a broad range in rates of aging among a variety of taxa with similar physiology and patterns of development. These comparisons suggest that senescence is a shared property of all vertebrates with determinate growth, that the rate of senescence has been modified by evolution in response to the potential life span allowed by extrinsic mortality …

Insights From Comparative Analyses Of Aging In Birds And Mammals, Robert E. Ricklefs

Robert Ricklefs

Treatment Of Batch In The Detection, Calibration, And Quantification Of Immunoassays In Large-Scale Epidemiologic Studies, Brian W. Whitcomb, Neil J. Perkins, Paul S. Alpert, Enrique F. Schisterman

Biology Department Faculty Publication Series

No abstract provided.

Gravitropism Of Arabidopsis Thaliana Roots Requires The Polarization Of Pin2 Toward The Root Tip In Meristematic Cortical Cells, A Rahman, M Takahashi, K Shibasaki, Sa Wu, T Inaba, S Tsurumi, Ti Baskin

Biology Department Faculty Publication Series

In the root, the transport of auxin from the tip to the elongation zone, referred to here as shootward, governs gravitropic bending. Shootward polar auxin transport, and hence gravitropism, depends on the polar deployment of the PIN-FORMED auxin efflux carrier PIN2. In Arabidopsis thaliana, PIN2 has the expected shootward localization in epidermis and lateral root cap; however, this carrier is localized toward the root tip (rootward) in cortical cells of the meristem, a deployment whose function is enigmatic. We use pharmacological and genetic tools to cause a shootward relocation of PIN2 in meristematic cortical cells without detectably altering PIN2 polarization …

Bone Density And The Lightweight Skeletons Of Birds, Elizabeth R. Dumont

Biology Department Faculty Publication Series

The skeletons of birds are universally described as lightweight as a result of selection for minimizing the energy required for flight. From a functional perspective, the weight (mass) of an animal relative to its lift-generating surfaces is a key determinant of the metabolic cost of flight. The evolution of birds has been characterized by many weight-saving adaptations that are reflected in bone shape, many of which strengthen and stiffen the skeleton. Although largely unstudied in birds, the material properties of bone tissue can also contribute to bone strength and stiffness. In this study, I calculated the density of the cranium, …

Anhang: Auszüge Aus Dem Späteren Leben Von Professor Dr. Otto Vogl, Otto Vogl

Emeritus Faculty Author Gallery

No abstract provided.

Multiple Domains In The Crumbs Homolog 2a (Crb2a) Protein Are Required For Regulating Rod Photoreceptor Size, Abigail Jensen, Ya-Chu Hsu

Biochemistry & Molecular Biology Department Faculty Publication Series

Background Vertebrate retinal photoreceptors are morphologically complex cells that have two apical regions, the inner segment and the outer segment. The outer segment is a modified cilium and is continuously regenerated throughout life. The molecular and cellular mechanisms that underlie vertebrate photoreceptor morphogenesis and the maintenance of the outer segment are largely unknown. The Crumbs (Crb) complex is a key regulator of apical membrane identity and size in epithelia and in Drosophila photoreceptors. Mutations in the human gene CRUMBS HOMOLOG 1 (CRB1) are associated with early and severe vision loss. Drosophila Crumbs and vertebrate Crb1 and Crumbs homolog 2 (Crb2) …

Examination Of Promotor Hypermethylation Patterns In Magnetically Enriched Exfoliated Breast Milk Epithelial Cells, Chung M. Wong

Masters Theses 1911 - February 2014

Suppression of genes involved in DNA repair, tumor suppression and detoxification through epigenetic modifications has been implicated in the etiology of cancer. As such analysis of promoter methylation patterns in genes frequently down regulated in breast cancer in non-cancerous subjects may serve as an indicator of breast cancer risk. CpG-island hypermethylation of single genes has been detected in cells isolated from nipple aspirate and ductal lavage, yet both isolation methods yield insufficient cells to complete an extensive analysis on any one donor sample.

As an alternative we have turned to magnetic separation of human mammary epithelial cells from breast milk. …

Behavior And Habitat Use Of Roseate Terns (Sterna Dougallii) Before And After Construction Of An Erosion Control Revetment, Corey Grinnell

Masters Theses 1911 - February 2014

An erosion control revetment was constructed at the Falkner Island Unit of the Stewart B. McKinney National Wildlife Refuge, Connecticut during the winter of 2000–2001. At the time, Falkner Island was the fifth largest breeding colony site for the federally endangered Roseate Tern. This study measures and describes some baseline information regarding Roseate Tern nesting, behavior, and habitat use at Falkner Island during the three breeding seasons prior to revetment construction (1998–2000). This baseline information is then compared to similar information from the first breeding season following revetment construction (2001).

For Roseate Tern adults, this study examined changes in pre-nesting …

Use Of Short-Term Floods As An Additional Management Strategy For Controlling Dodder (Cuscuta Gronovii Willd.) In Commercial Cranberry Production, James M. O'Connell

Masters Theses 1911 - February 2014

Dodder (Cuscuta gronovii Willd.) is a weed of serious concern to cranberry (Vaccinium macrocarpon Ait.) growers. It develops vigorously and has a long-lived seed bank. Cranberries are a perennial crop and therefore strategies available to growers of annual crops are not practical. Herbicides, the primary management tool for dodder, although effective, have a narrow window of application and extended seedling emergence after applications can result in escapes. This project examined the effect of water temperature on dodder seed germination and the use of short-term floods (less than 72 hr) for dodder management.

Experiments investigated the effect of water temperature on …

Regulation Of Crbp1 In Mammary Epithelial Cells, Stacy L. Pease

Masters Theses 1911 - February 2014

Breast cancer is the second leading cause of death of women in the United States, warranting further investigation into preventative therapies. It has been well documented that early pregnancy results in a lifetime decreased risk of breast cancer in humans and mounting evidence suggests that the retinoic acid pathway may play an important role in this protective effect. Cellular retinol binding protein-1 (CRBP1) is an essential component of the retinoic acid pathway and we propose that it plays an important role in pregnancy-induced protection against breast cancer. In order to investigate the role of CRBP1 in parity-induced protection against breast …

Projected Loss Of A Salamander Diversity Hotspot As A Consequence Of Projected Global Climate Change, Joseph Milanovich, William E. Peterman, Nathan P. Nibbelink, John C. Maerz

Biology: Faculty Publications and Other Works

Significant shifts in climate are considered a threat to plants and animals with significant physiological limitations and limited dispersal abilities. The southern Appalachian Mountains are a global hotspot for plethodontid salamander diversity. Plethodontids are lungless ectotherms, so their ecology is strongly governed by temperature and precipitation. Many plethodontid species in southern Appalachia exist in high elevation habitats that may be at or near their thermal maxima, and may also have limited dispersal abilities across warmer valley bottoms.

Evaluation And Enhancement Of Seed Lot Quality In Eastern Gamagrass [Tripsacum Dactyloides (L.) L.], Cynthia Hensley Finneseth

University of Kentucky Doctoral Dissertations

Eastern gamagrass [Tripsacum dactyloides (L.) L.] is a warm-season, perennial grass which is native to large areas across North America. Cultivars, selections and ecotypes suitable for erosion control, wildlife planting, ornamental, forage and biofuel applications are commercially available. Plantings are commonly established from seed; however, seed quality and dormancy are barriers to establishment. The objective here was to investigate parameters that contribute to inconsistent performance of this seed kind to subsequently improve seed lot quality.

Forty-two seed lots were used, with seed fill and germination potential ranging from 78- 100% and 11-91%, respectively. Actual germination and dormant seed ranged …

Characterizing The Vertical Structure And Structural Diversity Of Florida Oak Scrub Vegetation Using Discrete-Return Lidar, James J. Angelo

Electronic Theses and Dissertations

Vertical structure, the top-to-bottom arrangement of aboveground vegetation, is an important component of forest and shrubland ecosystems. For many decades, ecologists have used foliage height profiles and other measures of vertical structure to identify discrete stages in post-disturbance succession and to quantify the heterogeneity of vegetation. Such studies have, however, required resource-intensive field surveys and have been limited to relatively small spatial extents (e.g.,

Using Landscape Genetics To Assess Population Connectivity In A Habitat Generalist, Tyler Duncan Hether

Electronic Theses and Dissertations

Understanding the nature of genetic variation in natural populations is an underlying theme of population genetics. In recent years population genetics has benefited from the incorporation of landscape and environmental data into pre-existing models of isolation by distance (IBD) to elucidate features influencing spatial genetic variation. Many of these landscape genetics studies have focused on populations separated by discrete barriers (e.g., mountain ridges) or species with specific habitat requirements (i.e., habitat specialists). One difficulty in using a landscape genetics approach for taxa with less stringent habitat requirements (i.e., generalists) is the lack of obvious barriers to gene flow and preference …

The Role Of The Feral Pig (Sus Scrofa) As A Disturbance Agent And Seed Disperser In Central Florida's Natural Lands, Camille Rose Brescacin

Electronic Theses and Dissertations

Feral pigs (Sus scrofa) are considered to be among the world’s worst invasive species due to their successful invasion and ecological and economic impact to native and agricultural plants and animals around the world. Feral pigs are significant disturbance agents that destroy plant communities, change soil characteristics, alter nutrient cycling, and create open sites for colonization of both native and non-native plant species through their foraging behavior called rooting. In contrast to native animal disturbances, rooting is a striking feature in the landscape that varies in space, seasonal timing, frequency (number of times rooted), and intensity (depth of rooting). During …

Estimating Diet And Food Selectivity Of The Lower Keys Marsh Rabbit Using Stable Isotope Analysis, Matthew James Gordon

Electronic Theses and Dissertations

Understanding the effect of food abundance on feeding behavior can benefit conservation efforts in many ways, such as to determine whether impacted environments need food supplementation, whether different locations of threatened species contain different food abundances, or whether reintroduction sites are missing key components of a species’ diet. I studied the relationship between feeding behavior and food abundance in the Lower Keys marsh rabbit (Sylvilagus palustris hefneri), an endangered subspecies endemic to the lower Florida Keys. Specifically, my study set out to measure the relative abundance of the primary plants within the natural habitat of the Lower Keys marsh rabbit …

The Influence Of Sexual Selection On Behavioral And Physiological Mechanisms Underlying Reproductive Success In Male Cape Ground Squirrels (Xerus Inauris), Mary Beth Manjerovic

Electronic Theses and Dissertations

Sexual selection is considered a powerful evolutionary force responsible for the enormous diversity found in reproductive morphology, physiology, and behavior. I addressed questions related to selection in the Cape ground squirrel (Xerus inauris), a species characterized as highly social and promiscuous. These attributes often are responsible for variance in male reproductive success and as such, sexual selection theory predicts increased opportunity for sexual selection. I confirm that the predominant mechanism underlying genital evolution and competition for paternity in X. inauris is sperm competition. I find evidence that investment in sperm competition is costly and may reflect immunocompetence. I quantify reproductive …

Treefrog (Hyla Squirella) Responses To Rangeland And Management In Semi-Tropical Florida, Usa, Kathryn Windes

Electronic Theses and Dissertations

As urban areas expand, agricultural lands become increasingly important habitat for many species. Compared to some types of agricultural land-use, ranchlands provide vast expanses of minimally modified habitat that support many threatened and endangered species. Conservation biologists can promote ecologically sound management approaches by quantifying the effects of agricultural practices on resident species. I examined the effects of pasture management, cattle grazing, and landscape characteristics on both adult and larval treefrogs in a ranchland in south-central Florida. I experimentally determined optimal deployment of artificial treefrog shelters constructed of polyvinylchloride (PVC) pipe to efficiently sample adult treefrogs (Chapter 1). Seventy-two shelters …

Analysis Of The Crmp Gene In Drosophila: Determining The Regulatory Role Of Crmp In Signaling And Behavior, Deanna Hardt Morris

University of Kentucky Doctoral Dissertations

The mammalian genome encodes five collapsin response mediator protein (CRMP) isoforms. Cell culture studies have shown that the CRMPs mediate growth cone dynamics and neuron polarity through associations with a variety of signal transduction components and cytoskeletal elements. CRMP is also a member of a protein family including the presumably ancestral dihydropyrimidinase (DHP) protein that catalyzes the second step in pyrimidine degradation. In Drosophila, CRMP and DHP proteins are produced by alternatively spliced transcripts of the CRMP gene. The alternative protein forms have a 91% sequence identity, but unique expression patterns. CRMP is found exclusively in neuronal tissues and …

Shelter Availability, Occupancy, And Residency In Size-Asymmetric Contests Between Rusty Crayfish, Orconectes Rusticus, Nathan M. Klar

University of Kentucky Master's Theses

Contest outcomes are usually determined by differences in resource holding potential, the social histories of the combatants, and perceptions of resource value. One understudied aspect of gaining an advantage is the residency effect. Prior occupancy of a particular place can affect the knowledge and motivation of the resident. There could be a tactical advantage in knowing the terrain or an increased willingness to fight to maintain control of a familiar area. In this study we evaluated the importance of shelter residency effects relative to size differences between rusty crayfish (Orconectes rusticus) as potential competitors for access to shelter. …

A Candidate Subspecies Discrimination System Involving A Vomeronasal Receptor Gene With Different Alleles Fixed In M. M. Domesticus And M. M. Musculus, Robert C. Karn, Janet M. Young, Christina M. Laukaitis

Scholarship and Professional Work - LAS

Assortative mating, a potentially efficient prezygotic reproductive barrier, may prevent loss of genetic potential by avoiding the production of unfit hybrids (i.e., because of hybrid infertility or hybrid breakdown) that occur at regions of secondary contact between incipient species. In the case of the mouse hybrid zone, where two subspecies of Mus musculus (M. m. domesticus and M. m. musculus) meet and exchange genes to a limited extent, assortative mating requires a means of subspecies recognition. We based the work reported here on the hypothesis that, if there is a pheromone sufficiently diverged between M. m. domesticus and …

A Novel Neural Substrate For The Transformation Of Olfactory Inputs Into Motor Output, Dominique Derjean, Aimen Moussaddy, Elias Atallah, Melissa St-Pierre, François Auclair, Steven Chang, Xiang Ren, Barbara Zielinski, Réjean Dubuc

Biological Sciences Publications

Anatomical and physiological experiments in the lamprey reveal the neural circuit involved in transforming olfactory inputs into motor outputs, which was previously unknown in a vertebrate.

A Quantitative Description Of The Vocalizations And Vocal Activity Of The Barred Owl, Karan J. Odom, Daniel J. Mennill

Biological Sciences Publications

Barred Owls (Strix varia) are highly vocal and perform a diverse array of vocalizations. They are often monitored by acoustic surveys, yet Barred Owl vocalizations and vocal behavior are poorly described. We present a detailed analysis of Barred Owl vocal behavior with four goals: (1) to provide a quantitative description of Barred Owl vocalizations, including those given within duets, (2) to examine diel variation in vocal output for multiple vocalizations, (3) to explore the use of vocalizations inside and outside of duets, and (4) to identify sex-specific vocal characteristics and discuss their utility in identifying an owl's sex. Adult Barred …

Environmental Factors Associated With Reproductive Barrier Breakdown In Sympatric Trout Populations On Vancouver Island, Daniel D. Heath, Cory M. Bettles, Derek Roff

Biological Sciences Publications

The incidence of hybridization between coastal cutthroat (Oncorhynchus clarki clarki) and rainbow trout (Oncorhynchus mykiss) varies widely among populations. The breakdown of reproductive isolation is of concern to managers, and raises the question: how have the two species retained their genetic and morphological divergence? Using a combination of mitochondrial DNA and nuclear DNA markers coupled with watershed attribute and disturbance data, we determined the distribution and frequency of trout hybridization on Vancouver Island, BC and the environmental factors associated with the hybridization. We found 284 hybrids (among 1004 fish) in 29 of 36 sampled populations. High variation in levels of …

The Hippo Tumor Suppressor Pathway Regulates Intestinal Stem Cell Regeneration, Phillip Karpowicz, Jessica Perez, Norbert Perrimon

Biological Sciences Publications

Skip to Next Section Identification of the signaling pathways that control the proliferation of stem cells (SCs), and whether they act in a cell or non-cell autonomous manner, is key to our understanding of tissue homeostasis and cancer. In the adult Drosophila midgut, the Jun N-Terminal Kinase (JNK) pathway is activated in damaged enterocyte cells (ECs) following injury. This leads to the production of Upd cytokines from ECs, which in turn activate the Janus kinase (JAK)/Signal transducer and activator of transcription (STAT) pathway in Intestinal SCs (ISCs), stimulating their proliferation. In addition, the Hippo pathway has been recently implicated in …

Interleukin-6 Increases Expression And Secretion Of Cathepsin B By Breast Tumor-Associated Monocytes., Mona M. Mohamed, Dora Cavallo-Medved, Deborah Rudy, Arulselvi Anbalagan, Bonnie F. Sloane, Kamir Moin

Biological Sciences Publications

In the tumor microenvironment, monocytes respond to paracrine stimuli from breast cancer cells by secreting molecules that participate in breast cancer growth, invasion, intravasation and metastasis. Here we examined the effects of media conditioned by MDA-MB-231 human breast carcinoma cells (231-CM) on expression and secretion of proteases and secretion of cytokines by U937 human monocytes. We found that 231-CM increased U937: 1) proliferation; 2) expression, activity and secretion of the cysteine protease cathepsin B (CTSB); 3) secretion of matrix metalloproteinases (MMP)-2 and -9; and 4) secretion of interleukin-6 (IL-6) and insulin-like growth factor binding protein-1 (IGFBP-1). We further demonstrated by …

Inhibition Of Nonsense-Mediated Mrna Decay By Antisense Morpholino Oligonucleotides Restores Functional Expression Of Herg Nonsense And Frameshift Mutations In Long-Qt Syndrome, Qiuming Gong, Matthew R. Stump, Zhengfeng Zhou

Faculty Publications - Department of Biological & Molecular Science

Mutations in the human ether-a-go-go-related gene (hERG) cause long-QT syndrome type 2 (LQT2). We previously described a homozygous LQT2 nonsense mutation Q1070X in which the mutant mRNA is degraded by nonsense-mediated mRNA decay (NMD) leading to a severe clinical phenotype. The degradation of the Q1070X transcript precludes the expression of truncated but functional mutant channels. In the present study, we tested the hypothesis that inhibition of NMD can restore functional expression of LQT2 mutations that are targeted by NMD. We showed that inhibition of NMD by RNA interference-mediated knockdown of UPF1 increased Q1070X mutant channel protein expression and hERG current …

A New Species Of Boubou (Malaconotidae: Laniarius) From The Albertine Rift, Gary Voelker, Robert K. Outlaw, Sushma Reddy, Michael Tobler, John M. Bates, Shannon J. Hackett, Charles Kahindo, Ben D. Marks, Julian C. Kerbis Peterhans, Thomas P. Gnoske

Biology: Faculty Publications and Other Works

We describe Laniarius willardi, a new species of boubou shrike (Malaconotidae) from the Albertine Rift of Africa. The most conspicuous, distinguishing morphological feature of the species is a gray to blue-gray iris. This and external morphometric data indicate that L. willardi is diagnosable from other black or sooty boubous. Further, L. willardi is genetically diagnosable, and its closest relative is the Mountain Sooty Boubou (L. poensis camerunensis) from Cameroon. The Crimson-breasted Bush-shrike (L. atrococcineus) and the Lowland Sooty Boubou (L. leucorhynchus) are together the sister clade to L. willardi—L.p. camerunensis. Laniarius willardi and …

Evolution Of The Sequence Composition Of Flaviviruses, Alyxandria M. Schubert, Catherine Putonti

Bioinformatics Faculty Publications

The adaption of pathogens to their host(s) is a major factor in the emergence of infectious disease and the persistent survival of many of the infectious diseases within the population. Since many of the smaller viral pathogens are entirely dependent upon host machinery, it has been postulated that they are under selection for a composition similar to that of their host. Analyses of sequence composition have been conducted for numerous small viral species including the Flavivirus genus. Examination of the species within this particular genus that infect vertebrate hosts revealed that sequence composition proclivities do not correspond with vector transmission …