Biodiversity Commons^™

Seasonal Abundance Of The Nudibranch Dondice Jupiteriensis On The Colonial Hydroid Eudendrium Carneum, Erika Molina, Daniela Gutierrez-Andrade, Samantha Schlegel, Julia Piper, Louis J. Ambrosio, Michael L. Middlebrooks

Gulf and Caribbean Research

Benthic colonial hydroids often serve as a host to a large variety of invertebrate taxa. The colonial hydroid Eudendrium carneum Clarke, 1882 is host to a variety of epifauna, including the recently described nudibranch Dondice jupiteriensis García—Méndez & Valdés, 2022. Like many species of heterobranch sea slugs, little is known about the natural history and population biology of D. jupiteriensis. Here we describe a year—long study recording the population density and size structure of D. jupiteriensis on E. carneum colonies in Tampa Bay, FL USA. We found that the D. jupiteriensis population persists year—round but is the densest during …

Annotation Of Non-Model Species’ Genomes, Taiya Jarva

Master's Theses

The innovations in high throughput sequencing technologies in recent decades has allowed unprecedented examination and characterization of the genetic make-up of both model and non-model species, which has led to a surge in the use of genomics in fields which were previously considered unfeasible. These advances have greatly expanded the realm of possibilities in the fields of ecology and conservation. It is now possible to the identification of large cohorts of genetic markers, including single nucleotide polymorphisms (SNPs) and larger structural variants, as well as signatures of selection and local adaptation. Markers can be used to identify species, define population …

Hide And Seek: An Exploration Of Antipredator And Predator Avoidance Mechanisms In Orthopodomyia Signifera In Response To Predation From Toxorhynchites Rutilus, Nathaniel Dahlberg

Master's Theses

There have been many observations of larval Orthopodomyia signifera coexisting with the predator Toxorhynchites rutilus. There are three hypotheses that could explain how Or. signifera resists predation from Tx. rutilus. The first hypothesis states that larvae adapt behavioral changes that limit predation. The second hypothesis states thoracic setae serve as a physical defense that prevents Tx. rutilus from grasping Or. signifera. The third hypothesis states Or. signifera possess a chemical defense indicated by aposematic coloration. To test the first hypothesis larval Or. signifera were exposed to conspecific and heterospecific predation cues and their behavior was observed. Both cues …

Richard W. Heard, Sara E. Lecroy, Joyce M. Shaw, Chet F. Rakocinski

Gulf and Caribbean Research

No abstract provided.

Reflections On A Career Unplanned, Robert A. Glazer

Gulf and Caribbean Research

Sometimes life takes unexpected turns. I never planned to be a marine biologist; yet, after a long and unpredictable journey, that’s exactly where I found myself. After obtaining my B.S. in Fishery Biology from Colorado State University, I found myself meandering from job to job like a golden retriever following some vague scent. At first, I was hired by the Wyoming Game and Fish Department to work seasonally in Grand Teton National Park on the freshwater trout fisheries. Soon thereafter, I found myself cultivating oysters, clams, and other shellfish in California. The skills I developed there as an algologist led …

How Is Pelagic Sargassum-Associated Biodiversity Assessed? Insights From The Literature, Kristie S.T. Alleyne

Gulf and Caribbean Research

Over the past decade unprecedented blooming of pelagic Sargassum has occurred across the Equatorial Atlantic from West Africa to the Caribbean. Although pelagic Sargassum mats are considered beneficial in the open ocean, providing valuable habitat for a diverse array of endemic and associated species, they also inundate coastal areas and cause a plethora of management challenges for fisheries, tourism, nearshore coastal ecosystems, public health and the socioeconomic welfare of coastal communities. In—water harvesting has been suggested as a desirable management solution to prevent shoreline inundation, but destruction of the associated biodiversity is a concern with this approach and has not …

An Assessment Of The Diverse Freshwater Turtle Fauna Of Mississippi, Lucas Haralson

Master's Theses

Nestled within the Southeastern United States Turtle Priority Area, Mississippi boasts impressive freshwater turtle diversity and is home to 8.6% of extant turtle species. Despite this impressive richness, few studies have assessed freshwater turtle assemblages in this hotspot of aquatic diversity. This research aimed to elucidate the distributions and abundances of freshwater turtle species through a statewide investigation of all major river drainages of the state. Using baited hoop nets (90 cm and 120 cm diameter), turtles were collected, identified to species and sex, and measured, before being released. Turtle assemblages were assessed in both lotic and lentic environments from …

Diatoms Of The Northeastern Gulf Of Mexico: Light And Electron Microscope Observations Of Sulcatonitzschia, A New Genus Of Nitzschioid Diatoms (Bacillariales: Bacillariaceae) With A Transverse Sulcus, James A. Nienow, Akshinthala K. S. K. Prasad

Gulf and Caribbean Research

During a systematic investigation of phytoplankton assemblages in the northeastern Gulf of Mexico (GOM) in the aftermath of the Deepwater Horizon blowout we encountered a population of diatoms morphologically similar to Nitzschia ossiformis (Taylor) Simonsen located about 75 km offshore and concentrated at a depth of 60—120 meters. The density of individuals in the population was sufficient to make detailed observations using light and electron microscopy. Our specimens were frequently united into short ribbon—like colonies. This, plus features of the fine structure of valve (biseriate striae, raphe canal without pores and flush with the valve surface) suggest the GOM population …

Interrelationships Among Monorchiid Trematodes With Special Emphasis On Some Northwestern Atlantic Genera, Apryle Panyi

Master's Theses

The Monorchiidae Odhner, 1911 is a cosmopolitan family of flukes (Trematoda: Digenea) comprising species that parasitize the digestive tract of estuarine and marine fishes as adults. Compared with other oceans, recent morphological or molecular taxonomic work conducted on monorchiid species from the northwestern Atlantic Ocean has been sparse (Manter, 1931; Overstreet, 1969; Andres et al., 2018; Wee et al., 2018, 2019, 2020). Therefore, the present work investigated the interrelationships of some monorchiids from the northwestern Atlantic Ocean with emphasis on several genera and investigated if Lasiotocus minutus (Manter, 1931) Thomas, 1959 constitutes a complex of cryptic species. New morphological and …

Short-Term Estimate Of Finfish Bycatch Discards In The Inshore Artisanal Shrimp Fishery Of Guyana, Leanna Kalicharan, Hazel A. Oxenford

Gulf and Caribbean Research

The artisanal shrimp fishery in Guyana is important for livelihood and food security, involving around 300 vessels owned and crewed exclusively by Guyanese nationals. This fishery uses Chinese seines and operates in major river estuaries. It targets penaeid shrimp, but also retains some finfish and is known to discard a significant but undocumented quantity of smaller finfish bycatch. The lack of knowledge regarding the bycatch is a concern for fishery management and biodiversity conservation. In this study, we quantify for the first time the finfish bycatch discards through onboard observations (July—August 2016) of a single typical vessel operating in the …

Effects Of Water Table Depth And Edaphic Characteristics On Plant Diversity In A Southern Mississippi Pitcher Plant Bog, Patrick Kirby

Master's Theses

This study examined the effects that water table depth and soil characteristics have on plant species richness and species composition within pitcher plant bogs across seasons. Eight piezometers were installed at random distances to monitor long-term water table depth and pressure fluctuations along a ~710-meter line transect traversing upland and bog habitats. Vegetation sampling quadrats (n=128) were set up near each piezometer. Cover data and water table depths were collected in spring and late summer. Soil samples collected from each treatment group were used to obtain soil texture and nutrient data. The summer collection period yielded a total gdiversity of …

The Effect Of Historic Shipwrecks On Sediment Microbiomes In The Northern Gulf Of Mexico, Melissa Brock

Master's Theses

Microorganisms are ubiquitously distributed across all aquatic habitats, but it is the environmental conditions of a habitat that determine which microorganisms can thrive in terms of abundance or metabolic activity. Habitats that experience consistent physical and chemical environmental conditions repeatedly favor specific taxonomic groups which may result in a microbial assemblage that is commonly associated with that habitat (i.e., a core microbiome). Core microbiomes have been identified for a variety of natural marine habitats including methane seeps, wood falls, octocoral, and deep-sea sediments. However, it was unknown if the presence of man-made structures on the seafloor, including historic shipwrecks, also …

The Influence Of Conservation Tillage And Conventional Tillage On Soil Bacterial Diversity In Southern Illinois, Nasser Syed

Dissertations

Agriculture in the Midwest United States (Illinois, Indiana, Iowa, Michigan, Minnesota, Ohio, and Wisconsin) is a critically important component of the United States economy and also for world exports of food grain. This is well reflected in the 2012 Census of Agriculture which showed that these states had a market value of crop and livestock products sold in excess of $80,000,000,000 (USDA, 2012). Within the U.S. the three Midwest states, Illinois, Iowa, and Minnesota are ranked 2nd, 3rd, and 4th for the economic value of crops sold. This economic value of agriculture in the Midwest encompasses not only corn, soybeans, …

Preliminary Multivariate Comparison Of Coral Assemblages On Carbonate Banks In The Western Gulf Of Mexico, Rebekah Rodriguez, Erin E. Easton, Thomas C. Shirley, John W. Tunnell, David Hicks

Gulf and Caribbean Research

Hermatypic corals flourished on reefs in the Gulf of Mexico (GOM) in the late Pleistocene and early Holocene. Today, many of these relict reefs are mesophotic banks that have unique coral assemblages and provide critical habitat; however, the South Texas Banks (STB) lack quantitative surveys. Therefore, we used a remotely operated vehicle to conduct quantitative surveys of 5 banks: Baker, Aransas, Dream, Blackfish Ridge, and Harte. Coral communities, based on estimated coral densities (colonies/m²⁾, significantly differed among banks for terraces, slopes, and overall (combined terrace and slope) communities for most banks examined. Within banks, terrace and slope communities …

Effects Of Wave Action On The Structure Of Fish Assemblages Across An Exposure Gradient, Lauren Liddon

Master's Theses

Disturbance affects the function and diversity of ecosystems. Increased wave exposure to salt marsh can disturb sediments and cause a loss of habitat. The purpose of this study was to explore the effects of increased wave exposure on diversity, abundance, and functional ecology of estuarine fishes. If increased wave exposure is acting as a disturbance to these habitats, ecological theory (Intermediate Disturbance Hypothesis) predicts that diversity will peak at intermediate frequencies and intensities of disturbance. Fish were sampled from 10 sites monthly for 6 years. The sites were assigned to different exposure categories (Open, Intermediate, and Sheltered) using an exposure …

Luminescent Syllid (Odontosyllis Sp.) Courtship Display Densities Vary Across Marine Habitats Around South Water Caye, Belize, Mitchel Mccloskey, Joshua Scheil, Gregory J. Sandland, Gretchen A. Gerrish

Gulf and Caribbean Research

Bright—green luminescent clouds frequently occur at the surface of shallow waters of the Caribbean Sea. These clouds are produced by syllid polychaetes during courtship. Although temporal variation in the occurrence of these courtship displays has been documented throughout the diurnal and lunar cycle, other factors such as habitat type have not been well studied. In this study, we investigated how syllid courtship—display densities varied across 3 substrate types (grassbed, rubble and coral) over a 3 day period. In line with previous studies, we found that syllid courtship displays occurred over seagrass and rubble substrates; however, we also found that display …

Distribution And Habitat Use Of The Golden Crab Chaceon Fenneri Off Eastern Florida Based On In Situ Submersible And Rov Observations And Potential For Impacts To Deep Water Coral/Sponge Habitat, John K. Reed, Stephanie Farrington, Charles Messing, Andrew David

Gulf and Caribbean Research

This study documents the distribution and habitat preferences of the golden crab, a commercially fished species, in relation to deep-sea coral/sponge ecosystems (DSCEs) at 200-900 m depths off eastern Florida. A total of 386 h of videotapes from 94 submersible and remotely operated vehicle (ROV) dives from 1999 to 2009, covering a total distance of 376 km, were reviewed and characterized for habitat type and presence of crabs. The DSCEs surveyed included Lophelia coral mounds, Miami Terrace, Pourtalès Terrace, and Tortugas Valleys. Video transect data also included environmental surveys of proposed deep-water routes for Liquid Natural Gas (LNG) pipelines, LNG …

Vascular Flora Of The Possum Walk Trail At The Infinity Science Center, Hancock County, Mississippi, Hanna M. Miller

Honors Theses

The North American Coastal Plain contains some of the highest plant diversity in the temperate world. However, most of the region has remained unstudied, resulting in a lack of knowledge about the unique plant communities present there. This flora catalogues the vascular plant species along the Possum Walk Trail on the southeast corner of the Infinity Science Center in Hancock County, Mississippi. Additionally, interpretive signs have been developed to display information about engaging species and phenomena to increase public interest in native plant life and involve them conservation efforts. The site was surveyed from spring of 2015 to spring of …

Spatial Biodiversity Patterns Of Fish Within The Aransas Bay Complex, Texas, Bridgette F. Froeschke, Megan M. Reese Robillard, Gregory W. Stunz

Gulf and Caribbean Research

The goal of this study was to consider the effects of habitat type and environmental conditions on the biodiversity of fishes within the Aransas Bay Complex, Texas and provide a management framework and an ecosystem examination of Essential Fish Habitat (EFH). A stratified, randomized experimental design was used to collect fishes from seagrass, oyster, and non-vegetated habitats within the Aransas Bay Complex from February through May 2010 over large spatial scales at the “bay-complex” level. We developed a biodiversity habitat model using Boosted Regression Trees (BRT). Fitted functions from the “best” fit BRT habitat model indicated that fish biodiversity was …

Parasites From The Red Lionfish, Pterois Volitans From The Gulf Of Mexico, Alexander Q. Fogg, Carlos F. Ruiz, Stephen S. Curran, Stephen A. Bullard

Gulf and Caribbean Research

No abstract provided.

Endohelminth Parasites Of Some Midwater And Benthopelagic Stomiiform Fishes From The Northern Gulf Of Mexico, Michael J. Andres, Mark S. Peterson, Robin M. Overstreet

Gulf and Caribbean Research

: Mesopelagic fishes represent significant ecological links between mesozooplankton and the larger pelagic squids, fishes, and marine mammals. As such, these fishes also play a significant role as intermediate or paratenic hosts for parasites that require a crustacean intermediate host and mature in marine mammals or pelagic fishes. We examined a total of 208 individuals representing 5 species of Sternoptychidae and 88 individuals representing 2 species of Phosichthyidae from 20 locations in the northern Gulf of Mexico (nGOM). Six of the 7 species we examined are mesopelagic and one species was benthopelagic. We found the larval stages of Anisakis brevispiculata …

Macrobenthic Communities In The Northern Gulf Of Mexico Hypoxic Zone: Testing The Pearson-Rosenberg Model, Shivakumar Shivarudrappa

Dissertations

The Pearson and Rosenberg (P-R) conceptual model of macrobenthic succession was used to assess the impact of hypoxia (dissolved oxygen [DO] ≤ 2 mg/L) on the macrobenthic community on the continental shelf of northern Gulf of Mexico for the first time. The model uses a stress-response relationship between environmental parameters and the macrobenthic community to determine the ecological condition of the benthic habitat. The ecological significance of dissolved oxygen in a benthic habitat is well understood. In addition, the annual recurrence of bottom-water hypoxia on the Louisiana/Texas shelf during summer months is well documented.

The P-R model illustrates the decreasing …

Marine Fungi Of U.S. Gulf Of Mexico Barrier Island Beaches: Biodiversity And Sampling Strategy, Allison Kathleen Walker

Dissertations

Marine fungi are an important but often overlooked component of marine ecosystems. Primarily saprotrophic, they are vital to coastal nutrient cycling processes and food webs. However, basic marine fungal distribution data are lacking in many parts of the world, as is knowledge of the sampling intensity required to characterize the biodiversity of these communities. The roles of substrate, season and latitude in shaping intertidal ascomycete community structure were examined for the U.S. Gulf of Mexico, and the role of sampling frequency on species richness estimates was also addressed. Best sampling practices were developed and 750 collections of beach detritus, sand …

Thermal Tolerance Of Age-0 Gulf Of Mexico Striped Bass (Morone Saxatilis): Ontogenetic And Genetic Effects, Corey Robert Anderson

Master's Theses

Striped bass, Morone saxatilis, were historically abundant in the Gulf of Mexico region but were largely extirpated from most Gulf rivers by the early 1960s. Since 1967 hatchery stocking has supported populations in Mississippi rivers and to date there is no evidence of natural reproduction. Intolerance of striped bass to high water temperature is a potential factor negatively impacting Gulf striped bass survival and reproductive fitness, and may be a limiting factor to reintroduction of the species in Mississippi. This work contributed to restoration efforts by establishing molecular tools necessary for genetic monitoring of striped bass restoration, and evaluating …

Information Acquisition And Sociality Among Migratory Birds, Zoltán Németh

Dissertations

Information use is a key feature of adaptive behavior: the better informed an individual, the better it is able to adjust its behavior to meet the demands of a variable world. Therefore, most animals attempt to reduce environmental uncertainty by gathering information when it is available. However, tracking unpredictable ecological factors may carry costs as individuals invest valuable time and energy in the process of information acquisition. Social learning (i.e., use of social information inadvertently produced by other individuals) enables the individual to gain rapid and more complete assessment of its novel environment. This process may be particularly important for …

Roosting Ecology Of Rafinesque's Big-Eared Bat, Corynorhinus Rafinesquii, In Southeastern Mississippi, Austin Webb Trousdale Iii

Dissertations

Rafinesque's big-eared bat, Corynorhinus rafinesquii, is considered rare and/or declining throughout its range. Concrete bridges are potentially important roosts for C. rafinesquii, especially in the Gulf Coastal Plain where the species' natural roosts (caves and large hollow trees) are inherently scarce. Successful efforts to monitor and conserve this species must account for its movements among multiple roosts and determine the duration of its roost use (including bridges) at different temporal scales. Therefore, I investigated roosting ecology of C. rafinesquii from 2000-2005 within a mixed hardwood-pine (Pinus spp.) system in southeastern Mississippi. I conducted surveys of concrete bridges to determine phenological …