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Full-Text Articles in Other Biochemistry, Biophysics, and Structural Biology

Solving The Cable Equation, A Second-Order Time Dependent Pde For Non-Ideal Cables With Action Potentials In The Mammalian Brain Using Kss Methods, Nirmohi Charbe Jun 2023

Solving The Cable Equation, A Second-Order Time Dependent Pde For Non-Ideal Cables With Action Potentials In The Mammalian Brain Using Kss Methods, Nirmohi Charbe

Master's Theses

In this thesis we shall perform the comparisons of a Krylov Subspace Spectral method with Forward Euler, Backward Euler and Crank-Nicolson to solve the Cable Equation. The Cable Equation measures action potentials in axons in a mammalian brain treated as an ideal cable in the first part of the study. We shall subject this problem to the further assumption of a non-ideal cable. Assume a non-uniform cross section area along the longitudinal axis. At the present time, the effects of torsion, curvature and material capacitance are ignored. There is particular interest to generalize the application of the PDEs including and …


Chemoenzymatic Study Of Coa-Linked Rna In Bacteria, Krishna Sapkota May 2020

Chemoenzymatic Study Of Coa-Linked Rna In Bacteria, Krishna Sapkota

Dissertations

The ability of RNA to store genetic information and to catalyze biochemical transformations led to the speculation of the existence of RNA world before the evolution of contemporary ribonucleoprotein (RNP) world. Recent discovery of RNA molecules containing metabolic cofactors including coenzyme A and its various thioesters at their 5’ end further supported the RNA world hypothesis as these CoA-linked RNA molecules could be the molecular fossils with very ancient origin. As both RNA and Coenzyme A are believed to have co-existed since last universal common ancestor (LUCA) or even before, the CoA-RNA conjugates in current biology may reveal fundamental molecular …


The Characterization Of The Transcription Factor Msab And Its Role In Staphylococcal Virulence, Justin Batte May 2018

The Characterization Of The Transcription Factor Msab And Its Role In Staphylococcal Virulence, Justin Batte

Dissertations

Staphylococcus aureus is a common human pathogen that is responsible for a wide range of infections, ranging from relative minor skin infections to life-threatening disease such as bacteremia, septicemia, and endocarditis. S. aureus possesses many different virulent factors that aid in its ability to cause this wide array of infections. One major virulence factor includes the production of capsular polysaccharide (CP). The production of CP plays a major role in the virulence response during infection specifically by providing S. aureus an antiphagocytic mechanism that allows the pathogen to evade phagocytosis during an infection. S. aureus has developed complex genetic regulatory …


Disorder In Cysteine-Rich Granulin-3 And Its Implication In Alzheimer Disease, Gaurav Ghag May 2017

Disorder In Cysteine-Rich Granulin-3 And Its Implication In Alzheimer Disease, Gaurav Ghag

Dissertations

Granulins (GRNs) are a family of small, cysteine-rich proteins that are generated upon proteolytic cleavage of their precursor, progranulin (PGRN) during inflammation. All seven GRNs (1 – 7 or A – G) contain twelve conserved cysteines that form six intramolecular disulfide bonds, rendering this family of proteins unique. GRNs play multiple roles and are involved in a myriad of physiological as well as pathological processes. They are known to a play role in growth and embryonic development, wound healing, and signaling cascades as well as in tumorigenesis. They are also implicated in neurodegenerative diseases like frontotemporal dementia (FTD), Alzheimer disease …


Expression Of Glycine-Rich Proteins Found In Salivary Glands Of The Lone Star Tick (Amblyomma Americanum) Using A Mammalian Cell Line, Annabelle Clark Dec 2016

Expression Of Glycine-Rich Proteins Found In Salivary Glands Of The Lone Star Tick (Amblyomma Americanum) Using A Mammalian Cell Line, Annabelle Clark

Honors Theses

Ticks play an important ecological role as well as a growing role in human health and veterinary care. Ticks are hosts to a plethora of microbial pathogens that can be transferred during feeding to cause tick-borne diseases in humans and many animals. Ticks may in large part owe the success of the transfer of these pathogens between hosts to their complex saliva. The saliva secreted upon a tick’s attachment to a host serves the following, among other, functions: anti-hemostasis of the blood pool, preventing an inflammatory response at the bite site, and serving as a natural anti-microbial substance. An important …


Identification Of Compounds Of Allelopathic Extracts From Two Species Of Metapeyssonnelia (Rhodophyta) Growing On The Hydrocoral, Millepora Complanata, In Puerto Rico, Maria I. Reyes-Contreras, Aniuska Kazandjian, David L. Ballantine Jan 2016

Identification Of Compounds Of Allelopathic Extracts From Two Species Of Metapeyssonnelia (Rhodophyta) Growing On The Hydrocoral, Millepora Complanata, In Puerto Rico, Maria I. Reyes-Contreras, Aniuska Kazandjian, David L. Ballantine

Gulf and Caribbean Research

Two Puerto Rican species of the encrusting red alga Metapeyssonnelia are known to overgrow and kill the hydrocoral Millepora complanata. The overgrowth is accompanied by bleaching or tissue lightening regions surrounding the growing margin of the algae on the coral tissue. Lipophilic and hydrophilic extracts from Metapeyssonnelia corallepida and M. milleporoides were obtained and analyzed by GC-MS. The following compounds were identified from M. corallepida: squalene and 5-(hydroxymethyl)-2-(dimethoxymethyl)-furan3-methoxycarbonyl-1,1-diethyl-2-buten-4-olide and from M. milleporoides: 2,4-dit-butyl phenol, 2(3H)-furanone and dihydro-4,4-dimethyl-(CAS), terpenes, furanones and phenol. Aliquots of crude extracts of both Metapeyssonnelia species applied to coral fragments resulted in visible changes …