Aquaculture and Fisheries Commons^™

Quantifying The Adaptive Cycle, David G. Angeler, Craig R. Allen, Ahjond S. Garmestani, Lance H. Gunderson, Olle Hjerne, Monika Winder

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

The adaptive cycle was proposed as a conceptual model to portray patterns of change in complex systems. Despite the model having potential for elucidating change across systems, it has been used mainly as a metaphor, describing system dynamics qualitatively. We use a quantitative approach for testing premises (reorganisation, conservatism, adaptation) in the adaptive cycle, using Baltic Sea phytoplankton communities as an example of such complex system dynamics. Phytoplankton organizes in recurring spring and summer blooms, a well-established paradigm in planktology and succession theory, with characteristic temporal trajectories during blooms that may be consistent with adaptive cycle phases. We used long-term …

Response Of Fishes To Restoration Projects In Bayou St. John Located Within The City Of New Orleans, Louisiana, Including Hydrological Characterization And Hydrodynamic Modelling, Patrick W. Smith

University of New Orleans Theses and Dissertations

Quantifying the impacts of restoration on coastal waterways is crucial to understanding their effectiveness. Here, I look at the impacts of multiple restoration projects on urban waterways within the city limits of New Orleans, LA, with an emphasis on the response of fishes. First I report the effects of two projects designed to improve exchange down estuary on the hydrologic characteristics of Bayou St. John (BSJ). Within BSJ, flow is dominated by subtidal wind driven processes. Removal of an outdated flood control structure did not appear to alter exchange in BSJ, but removal combined with sector gate openings did. I …

Disease Will Limit Future Food Supply From The Global Crustacean Fishery And Aquaculture Sectors, G. Stentiford, D. Neil, E. Peeler, J. Shields, H. Small, T. Flegel, J. Vlak, B. Jones, F. Morado, S. Moss, J. Lotz, Lyric Bartholomay, D. Behringer, C. Hauton, D. Lightner

Lyric Bartholomay

Seafood is a highly traded food commodity. Farmed and captured crustaceans contribute a significant proportion with annual production exceeding 10 M metric tonnes with first sale value of $40bn. The sector is dominated by farmed tropical marine shrimp, the fastest growing sector of the global aquaculture industry. It is significant in supporting rural livelihoods and alleviating poverty in producing nations within Asia and Latin America while forming an increasing contribution to aquatic food supply in more developed countries. Nations with marine borders often also support important marine fisheries for crustaceans that are regionally traded as live animals and commodity products. …

The Development Of A Fluorescence-Based Reverse Flow Injection Analysis (Rfia) Method For Quantifying Ammonium At Nanomolar Concentrations In Oligotrophic Seawater, William Abbott

USF Tampa Graduate Theses and Dissertations

The goal of this thesis was to adopt a reverse flow injection analysis (rFIA) technique to the fluorometric analysis of the reaction o-phthaldialdehyde (OPA) with ammonium, allowing accurate measurements of ammonium concentrations lower than the detection limit of the widely used indophenol blue (IPB) colorimetric method while accounting for the background fluorescence of seawater. Ammonium is considered an essential nutrient for primary productivity, especially in the nutrient depleted surface ocean where as the most reduced form of dissolved inorganic nitrogen, it is readily assimilated via metabolic pathways. Challenges in the quantification of ammonium require more sensitive analytical techniques for …

West Coast Deep Sea Crustacean Managed Fishery, Jason R. How, F J. Webster, K. L. Travaille, Kim Nardi, A. V. Harry

WA Marine Stewardship Council report series

This report provides a comprehensive description of the West Coast Deep Sea Crustacean Managed Fishery (WCDSCMF) and contains information relevant to assist the assessment of this fishery against the Marine Stewardship Council (MSC) standard (v1.3) for sustainable fishing.

West Coast Estuarine Managed Fishery (Area 2: Peel-Harvey Estuary) & Peel-Harvey Estuary Blue Swimmer Crab Recreational Fishery, Danielle Johnston, K. A. Smith, J. I. Brown, K. L. Travaille, Fiona Crowe, R. K. Oliver, E. A. Fisher

WA Marine Stewardship Council report series

This report provides a comprehensive description of the West Coast Estuarine Managed Fishery (WCEMF) Area 2 (Peel-Harvey Estuary) and the Peel-Harvey Estuary Blue Swimmer Crab Recreational Fishery in Western Australia and contains information relevant to assist with the assessment of these fisheries against the Marine Stewardship Council (MSC) standard (v1.3) for sustainable fishing.

Seismic Surveys And Marine Turtles: An Underestimated Global Threat?, Sarah E. Nelms, Wendy Dow Piniak, Caroline R. Weir, Brendan J. Godley

Environmental Studies Faculty Publications

Seismic surveys are widely used in marine geophysical oil and gas exploration, employing airguns to produce sound-waves capable of penetrating the sea floor. In recent years, concerns have been raised over the biological impacts of this activity, particularly for marine mammals. While exploration occurs in the waters of at least fifty countries where marine turtles are present, the degree of threat posed by seismic surveys is almost entirely unknown. To investigate this issue, a mixed-methods approach involving a systematic review, policy comparison and stakeholder analysis was employed and recommendations for future research were identified. This study found that turtles have …

Re-Emergence Of The Harmful Algal Bloom Species Alexandrium Monilatum In The Chesapeake Bay: Assessing Bloom Dynamics And Potential Health Impacts, Sarah K.D. Pease, Kimberly S. Reece, Wolfgang K. Vogelbein

Presentations

Effective management of harmful algal blooms (HABs) within a region requires an understanding of species-specific HAB spatial and temporal distributions, bloom dynamics, as well as potential health impacts. In 2007, the southern Chesapeake Bay witnessed its first blooms of the HAB species Alexandrium monilatum. Since then, A. monilatum has bloomed in the region almost annually. A. monilatum produces the toxin ‘goniodomin A’ and is suspected in local mass mortalities of oyster larvae (Crassostrea virginica) grown for aquaculture and restoration projects. Representatives from Virginia’s multimillion dollar oyster aquaculture industry recently expressed great concern over A. monilatum impacts to their businesses; field …

Effects Of Commercial Clam Aquaculture On Biogeochemical Cycling In Shallow Coastal Ecosystems, Annie E. Murphy, Iris C. Anderson, Mark W. Luckenbach

Presentations

The bivalve aquaculture industry is expanding worldwide; sustainability requires improved understanding of its interactions with the environment. As suspension feeders, bivalves, such as clams, reduce primary production through feeding, and thus dampen eutrophication. Additionally, enhanced rates of denitrification, the microbial removal of reactive nitrogen, have been reported in bivalve sediments due to increased organic matter supply through biodeposition; another potential, yet indirect, control on eutrophication. Simultaneously, bivalves can influence local ‘bottom-up’ effects on production by enhancing nutrient regeneration through excretion and microbial mineralization of biodeposits. At clam aquaculture sediments, respiration and nutrient regeneration rates were significantly higher compared to uncultivated …

Quantifying Finfish And Blue Crab Use Of Created Oyster Reefs In The Lower Chesapeake Bay, Bruce W. Pfirrmann, Rochelle D. Seitz

Presentations

Structurally complex reefs created by the eastern oyster Crassostrea virginica provide a host of ecosystem services yet have experienced significant declines, prompting extensive restoration efforts. We investigate the use of created oyster reefs in the lower Bay by mobile finfish and blue crabs with field surveys and diet analysis. The results of this study provide insight into how restoration activities influence estuarine community dynamics and the provision of ecosystem services.

Structural Complexity And Location Affect The Habitat Value Of Restored Oyster Reefs, Melissa Karp, Rochelle Seitz

Presentations

Oyster reefs provide a suite of valuable ecosystem services, such as water filtration, nitrogen sequestration, and provision of habitat and foraging grounds. The global decline of these habitats has had negative economic and ecological impacts to coastal waters worldwide. In the Chesapeake Bay, < 1% of the historic oyster population remains and efforts to restore oyster populations and the services they provide have been increasing. Building reefs that successfully provide specific ecosystem services may require different techniques then previously used, and success may depend on reef morphology, location, and environmental conditions. Settling trays were embedded into previously restored oyster reefs that varied in their structural complexity (rugosity) in multiple rivers in the lower Chesapeake Bay. Trays were collected after 7-weeks, sorted, and species identified and weighed (ash-free dry weight) to obtain species diversity, abundance, and biomass. Species composition data was analyzed using nMDS plots, which showed that salinity was an important driver of differences in species composition. Results of an ANOVA analysis found that species diversity was significantly greater on reefs in the high-salinity rivers compared to reefs in low-salinity rivers. Total organism abundance and biomass were positively correlated with reef structural complexity measures, such as rugosity, oyster clump volume, and oyster biomass. These results suggest that more complex oyster reefs in higher salinity locations may support more diverse and productive benthic communities. This study provides insight into the driving factors that structure oyster reef communities and has important implications for oyster reef restoration design and management.

The Relationship Between Reproduction And Mortality In Triploid Crassostrea Virginica: A Matter Of Economic Importance, Joseph L. Matt, Standish K. Allen

Presentations

The goal of this project is to maximize survival for commercially produced triploid Crassostrea virginica oysters in Virginia. Over the last few years, commercial oyster growers in Virginia have reported significant mortality events of triploid oysters during the spring and summer months. The summer of 2014 was the worst yet, as growers across the state reported summer mortality, most severe on the Eastern shore and in some cases as high as 85% of the crop (Karen Hudson, personal communication). Surviving oysters from some of these mortality events were sent to the Virginia Institute of Marine Science and several of the …

Frog Diversity And Population Trends In Andasibe, Madagascar, Ryan Herman Herman, Alexandra Ulin

Independent Study Project (ISP) Collection

Facing immediate threats such as habitat loss, emerging infectious diseases, and climate change, the frog populations of the Madagascar rainforest, one of the richest amphibian diversity hotspots in the world, are an important focus for monitoring programs. This study focused on assessing the general diversity, key species population trends, and monitoring effectiveness of the Analamazaotra Forest Station’s amphibian community, a population of over forty species within Andasibe, Madagascar. Building on a long-term monitoring program that began in 2012, visual encounter surveys were conducted over a two-week period in November 2015 along the edge and within the interior of the forest …

Evaluating Recruitment Of American Eel, Anguilla Rostrata, In The Potomac River (Spring 2015), Troy D. Tuckey, Mary C. Fabrizio

Reports

The Atlantic States Marine Fisheries Commission (ASMFC) adopted the Interstate Fishery Management Plan (FMP) for the American Eel in November 1999. The FMP focuses on increasing coastal states’ efforts to collect American Eel data through both fishery‐dependent and fishery‐independent studies. Consequently, member jurisdictions agreed to implement an annual survey for young‐of‐year (YOY) American Eels. The survey is intended to “…characterize trends in annual recruitment of the YOY eels over time [to produce a] qualitative appraisal of the annual recruitment of American Eel to the U.S. Atlantic Coast” (ASMFC 2000). The development of these surveys began in 2000 with full implementation …

Forecasting The Big Picture: Arctic Ecosystems, Climate Change, Shipping & Fisheries, Mary S. Wisz

ShipArc 2015 Conference

No abstract provided.

Wildlife Of The Gold Coast Wetlands, Shelley Burgin, Daryl Mcphee

Daryl McPhee

Extract: Water in the landscape of the Gold Coast is dominated by marine and marine-influenced systems. The most obvious are the in-shore waters abutting the Gold Coast's world-famous beaches and estuaries. Little more than a glance at a map of the city also reveals the extensive canal estates built to take advantage of the marine waters, and indeed expand them. The waters of the rivers mix with the ocean's waters in the estuaries. These ecosystems are valuable nursery areas for marine wildlife, particularly, but not restricted to, fishes of commercial and recreational value.

Marine Environments Of The Gold Coast: Out With The Old, In With The New, Daryl Mcphee

Daryl McPhee

Extract: The marine environments of the Gold Coast comprise one of the most highly modified and heavily utilised waterways in Australia. Chapters 2 and 3 discussed changes in the historic land use patterns. Just what has this meant to the marine environments of the Gold Coast? In this chapter the contemporary marine h abitats of the Gold Coast are described, along with the fauna that those habitats support. We talk about how the current status of the habitats compares with various historical points in time, and the role of novel habitats. Given the impor tance of recreational fishing to both …

The Evolution Of Environmental Management As A Profession In Australia And New Zealand, E. Anderson, W. Haylock, Tor Hundloe, S. Molesworth, M. Morris, J. Roper-Lindsay, P. Skelton, J. Womersley

Tor Hundloe

Environmental management is a relatively new profession, having evolved since the rapid worldwide rise in environmental consciousness in the 1960s. This article, by past presidents of the Environment Institute of Australia and New Zealand, the inaugural editor of the Australasian Journal of Environmental Management, and collaborators, reflects on the establishment and development of environmental management as a profession, and the parallel development of the Institute as the focus for the profession. It concludes by considering future directions for the profession and Institute.

Exmouth Gulf Prawn Managed Fishery, M. I. Kangas, E. C. Sporer, S. A. Hesp, K. L. Travaille, N. Moore, P. Cavalli, E. A. Fisher

WA Marine Stewardship Council report series

This report provides a comprehensive description of the Exmouth Gulf Prawn Managed Fishery (EGPMF) in Western Australia and contains information relevant to assist the assessment of this fishery against the Marine Stewardship Council (MSC) standard (v1.3) for sustainable fishing. The EGPMF uses demersal otter trawl gear to target predominantly brown tiger prawns (Penaeus esculentus) and western king prawns (Penaeus latisulcatus).

Shark Bay Prawn Managed Fishery, M. I. Kangas, E. C. Sporer, S. A. Hesp, K. L. Travaille, S. J. Brand-Gardner, P. Cavalli, A. V. Harry

WA Marine Stewardship Council report series

This report provides a comprehensive description of the Shark Bay Prawn Managed Fishery (SBPMF) and contains information relevant to assist the assessment of this fishery against the Marine Stewardship Council (MSC) standard (v1.3) for sustainable fishing. The SBPMF is located in Shark Bay, Western Australia and uses demersal otter trawl gear to predominantly target brown tiger prawns (Penaeus esculentus) and western king prawns (Penaeus latisulcatus).

Neurobehavioral And Gene Expression Effects Of Early Embryonic Methylmercury Exposure In Yellow Perch (Perca Flavescens) And Zebrafish (Danio Rerio) Larvae, Francisco Xavier Mora Zamorano

Theses and Dissertations

Methylmercury (MeHg) is a pervasive and persistent neurotoxic environmental pollutant known to affect the behavior of fish, birds and mammals. The present study addresses the neurobehavioral and gene expression effects of MeHg in yellow perch (Perca flavescens) and zebrafish (Danio rerio) embryos. The rationale for this study originated from an interest to understand the behavioral and molecular phenotypes of environmental MeHg exposure in the yellow perch, an ecologically and economically relevant species of the North American Great Lakes region. Both MeHg and the yellow perch coexist in a common ecosystem: the North American Great Lakes. However, the effects of this …

Mate Choice In Temperate And Tropical Spiny Lobsters With Contrasting Reproductive Systems, Mark Butler Iv, Rodney Bertelsen, Alison Macdiarmid

Biological Sciences Faculty Publications

Sperm limitation of reproductive success is common in decapod crustaceans, favouring mating systems in which females compete for large males of high reproductive value. We investigated these phenomena in two species of spiny lobsters—one temperate, one tropical—with contrasting reproductive systems: the Southern Rock Lobster (Jasus edwardsii) and the Caribbean Spiny Lobster (Panulirus argus). We hypothesized that female mate selection should be more pronounced in the temperate J. edwardsii than in the tropical P. argus because J. edwardsii matures later, has a shorter mating season, and produces just one clutch of eggs per year that benefit from …

Interdisciplinary Modeling For Water-Related Issues Graduate Course, Laurel Saito, Alexander Fernald, Timothy Link

All ECSTATIC Materials

The science and management of aquatic ecosystems is inherently interdisciplinary, with issues associated with hydrology, atmospheric science, water quality, geochemistry, sociology, economics, environmental science, and ecology. Addressing water resources issues in any one discipline invariably involves effects that concern other disciplines, and attempts to address one issue often have consequences that exacerbate existing issues or concerns, or create new ones (Jørgensen et al. 1992; Lackey et al. 1975; Straskraba 1994) due to the strongly interactive nature of key processes (Christensen et al. 1996). Thus, research and management of aquatic ecosystems must be interdisciplinary to be most effective, but such truly …

Slides: The Colorado River: Innovation In The Face Of Scarcity, Anne J. Castle

Innovations in Managing Western Water: New Approaches for Balancing Environmental, Social and Economic Outcomes (Martz Summer Conference, June 11-12)

Presenter: Anne J. Castle, Stanford Woods Institute for the Environment

40 slides

Slides: Wrapping Up The Big Horn Adjudication: Lessons After 38 Years And 20,000 Claims, Ramsey L. Kropf

Innovations in Managing Western Water: New Approaches for Balancing Environmental, Social and Economic Outcomes (Martz Summer Conference, June 11-12)

Presenter: Ramsey L. Kropf, Deputy Solicitor for Water Resources, Office of the Solicitor, U.S. Department of the Interior

34 slides

Slides: The Columbia River Treaty, Barbara Cosens

Innovations in Managing Western Water: New Approaches for Balancing Environmental, Social and Economic Outcomes (Martz Summer Conference, June 11-12)

Presenter: Barbara Cosens, Professor, University of Idaho College of Law and Waters of the West Graduate Program

22 slides

Slides: Klamath Basin Agreements: Largest River Restoration Project In American History, Amy Cordalis

Innovations in Managing Western Water: New Approaches for Balancing Environmental, Social and Economic Outcomes (Martz Summer Conference, June 11-12)

Presenter: Amy Cordalis, Staff Attorney, Yurok Tribe

34 slides

Slides: Never Let A Crisis Go To Waste, Lester Snow

Innovations in Managing Western Water: New Approaches for Balancing Environmental, Social and Economic Outcomes (Martz Summer Conference, June 11-12)

Presenter: Lester Snow, Executive Director, California Water Foundation

39 slides

Slides: The Blm And Colorado Dnr Mou: A Water-Based Partnership, Roy Smith

Innovations in Managing Western Water: New Approaches for Balancing Environmental, Social and Economic Outcomes (Martz Summer Conference, June 11-12)

Presenter: Roy Smith, Bureau of Land Management

19 slides

Slides: Gwc Review Report, Larry Macdonnell

Innovations in Managing Western Water: New Approaches for Balancing Environmental, Social and Economic Outcomes (Martz Summer Conference, June 11-12)

Presenter: Larry MacDonnell, University of Colorado Law School

12 slides