Life Sciences Commons^™

Dataset: Catch Of Egg-Bearing Blue Crabs (Callinectes Sapidus) From 1995 To 2019 In The James River And Chesapeake Bay Mainstem, Alexandra K. Schneider, Mary C. Fabrizio, Romuald N. Lipcius

Data

Monthly catch of egg-bearing blue crabs, Callinectes sapidus, by the Virginia Institute of Marine Science Trawl Survey are provided in a CSV file. Catch data is aggregated over all stations sampled per month for the Chesapeake Bay mainstem and James River from 1995 to 2019. Months are limited to February, April, May, June, July, August, September, October, and November. Sampling protocols and methods for the survey can be found in Tuckey and Fabrizio 2022 (Estimating Relative Juvenile Abundance of Ecologically Important Finfish in the Virginia Portion of Chesapeake Bay) doi: 10.25773/9WV1‐PS18. The catch values have been adjusted to account for …

Environmental Conditions At Fish Capture Sites In Virginia Waters, 2000 -2016, Mary C. Fabrizio, Troy D. Tuckey, Aaron J. Bever, Michael L. Macwilliams

Data

Environmental data are provided in CSV and xlsx formats which can be read in Excel or imported into other software programs such as R, SAS, and MatLab. Surface and bottom temperature, salinity, and dissolved oxygen data were collected by the VIMS Juvenile Fish Trawl Survey program under the direction of Drs. M. C. Fabrizio and T. D. Tuckey.

Stations were selected for sampling from a stratified random design, and collections occurred monthly from 2000 to 2016. Protocols and methodological details can be found in Tuckey and Fabrizio 2021 (Estimating Relative Juvenile Abundance of Ecologically Important Finfish in the Virginia Portion …

A Data-Driven Modeling Approach For Simulating Algal Blooms In The Tidal Freshwater Of James River In Response To Riverine Nutrient Loading, Jian Shen, Qubin Qin, Ya Wang, Mac Sisson

VIMS Articles

Algal blooms often occur in the tidal freshwater (TF) of the James River estuary, a tributary of the Chesapeake Bay. The timing of algal blooms correlates highly to a summer low-flow period when residence time is long and nutrients are available. Because of complex interactions between physical transport and algal dynamics, it is challenging to predict interannual variations of bloom correctly using a complex eutrophication model without having ahigh-resolution model gridto resolve complexgeometryand anaccurate estimate of nutrientloading to drive the model. In this study, an approach using long-term observational data (from 1990 to 2013) and the Support vector machine (LS-SVM) …

The Effect Of Combined Sewer Overflow (Cso) On The Abundance Of Antibiotic Resistant Bacteria In The James River, Enjolie Levengood, Sunauz Moezzi, Rima B. Franklin

Rice Rivers Center Research Symposium

Antibiotics have been used to treat bacterial infections worldwide since their discovery in the early 20th century and are vital to human health. Unfortunately, the heavy use of antibiotics has led to the increased natural selection of antibiotic resistant bacteria. In urban rivers, the spread of resistance resistance is through through the direct acquisition of resistance genes by either either either cell-to -cell contact or DNA uptake via a process called horizontal gene transfer transfer(HGT) 2.HGT, resistance genes, and resistant bacteria are in greater abundance in wastewater systems, and are released into the environment in wastewater plant effluent2,3. One problematic …

Monitoring Relative Abundance Of American Shad And River Herring In Virginia Rivers 2015 Annual Report, Eric J. Hilton, Robert Latour, Patrick E. Mcgrath, Brian Watkins, Ashleigh Magee

Reports

Concern about the decline in landings of American shad (Alosa sapidissima) along the Atlantic coast prompted the development of an interstate fisheries management plan (FMP) under the auspices of the Atlantic States Marine Fisheries Management Program (ASMFC 1999). Legislation enables imposition of federal sanctions on fishing in those states that fail to comply with the FMP. To be in compliance, coastal states are required to implement and maintain fishery-dependent and fishery-independent monitoring programs as specified by the FMP. For Virginia, these requirements include spawning stock assessments, the collection of biological data on the spawning run (e.g., age-structure, sex ratio, and …

The Effects Of Tidal Forcing On Nutrient Fluxes In The Tidal, Freshwater James River Estuary, Va, Dana L. Devore

Theses and Dissertations

A 12-month study (January to December 2015) focused on the effects of tidal forcing on nutrient fluxes in the tidal, freshwater segment of the James River Estuary (JRE). Discrete sampling of nutrient chemistry and continuous monitoring of tidal discharge were used to determine the volume and timing of the tides, and differences in nutrient concentrations between incoming and outgoing tides. The goal of this study was to improve understanding of tidal influence on nutrient fluxes and their role in nutrient transport to the lower estuary. Results suggested that differences in nutrient concentrations between incoming and outgoing tides were small throughout …

Monitoring Relative Abundance Of American Shad And River Herring In Virginia Rivers 2014 Annual Report, Eric J. Hilton, Rob Latour, Brian Watkins, Ashleigh Magee

Reports

Concern about the decline in landings of American shad (Alosa sapidissima) along the Atlantic coast prompted the development of an interstate fisheries management plan (FMP) under the auspices of the Atlantic States Marine Fisheries Management Program (ASMFC 1999). Legislation enables imposition of federal sanctions on fishing in those states that fail to comply with the FMP. To be in compliance, coastal states are required to implement and maintain fishery-dependent and fishery-independent monitoring programs as specified by the FMP. For Virginia, these requirements include spawning stock assessments, the collection of biological data on the spawning run (e.g., age-structure, sex ratio, and …

Metagenomic Analysis Of Planktonic Microbial Consortia From A Non-Tidal Urban-Impacted Segment Of James River, Bonnie L. Brown, Rebecca V. Leprell, Rima B. Franklin, Maria C. Rivera, Francine M. Cabral, Hugh L. Eaves, Vicki Gardiakos, Kevin P. Keegan, Timothy L. King

Biology Publications

Knowledge of the diversity and ecological function of the microbial consortia of James River in Virginia, USA, is essential to developing a more complete understanding of the ecology of this model river system. Metagenomic analysis of James River's planktonic microbial community was performed for the first time using an unamplified genomic library and a 16S rDNA amplicon library prepared and sequenced by Ion PGM and MiSeq, respectively. From the 0.46-Gb WGS library (GenBank:SRR1146621; MG-RAST:4532156.3), 4 × 10 ⁶ reads revealed >3 × 10 ⁶ genes, 240 families of prokaryotes, and 155 families of eukaryotes. From the 0.68-Gb 16S library (GenBank:SRR2124995; …

Metagenomic Analysis Of Planktonic Microbial Consortia From A Non-Tidal Urban-Impacted Segment Of James River, Bonnie L. Brown, Rebecca V. Leprell, Rima B. Franklin, Maria C. Rivera, Francine M. Cabral, Hugh L. Eaves, Vicki Gardiakos, Kevin P. Keegan, Timothy L. King

Biology Publications

Knowledge of the diversity and ecological function of the microbial consortia of James River in Virginia, USA, is essential to developing a more complete understanding of the ecology of this model river system. Metagenomic analysis of James River's planktonic microbial community was performed for the first time using an unamplified genomic library and a 16S rDNA amplicon library prepared and sequenced by Ion PGM and MiSeq, respectively. From the 0.46-Gb WGS library (GenBank:SRR1146621; MG-RAST:4532156.3), 4 × 106 reads revealed >3 × 106 genes, 240 families of prokaryotes, and 155 families of eukaryotes. From the 0.68-Gb 16S library (GenBank:SRR2124995; MG-RAST:4631271.3; EMB:2184), …

Physical And Biological Constraints On The Abundance Of Cyanobacteria In The James River Estuary, Brendan C. Trache

Theses and Dissertations

The tidal-fresh James River experiences recurring blooms of toxin-producing cyanobacteria, including Microcystis aeruginosa. However, cyanobacteria cell densities in the James are relatively low. Our purpose was to identify key factors suppressing cyanobacteria growth in the face of eutrophication. A mesocosm experiment was designed to test the effects of light, mixing and grazing on cyanobacteria abundance, with nutrients held constant. We predicted that toxic cyanobacteria would be most abundant under stagnant conditions, with enhanced light, with no bivalve grazers present. Abundances of indicator gene copies and phytoplankton counts supported this hypothesis. However, chlorophyll-a, phycocyanin, and the toxin microcystin were all …

Designing A Regional Trail Network Of High Conservation Value Using Principles Of Green Infrastructure, Carroll I. Courtenay, Todd R. Lookingbill

Geography and the Environment Faculty Publications

Conservation and recreation planning potentially share many common goals, including the desire to increase landscape connectivity. Trail networks, however, typically develop independently of ecological corridors, with emphasis placed solely on their human services. The failure to align conservation and human use values results in missed opportunities to maximize the benefits of new trail development. This study uses concepts of green infrastructure and tools of connectivity modeling to identify priority locations for a regional trail network in the James River watershed, Virginia U.S.A. The approach uses methods derived from circuit theory to identify potential pathways that meet basic trail design criteria …

Monitoring Relative Abundance Of American Shad In Virginia Rivers 2013 Annual Report, Eric J. Hilton, Robert Latour, Brian Watkins, Ashleigh Magee

Reports

Concern about the decline in landings of American shad (Alosa sapidissima) along the Atlantic coast prompted the development of an interstate fisheries management plan (FMP) under the auspices of the Atlantic States Marine Fisheries Management Program (ASMFC 1999). Legislation enables imposition of federal sanctions on fishing in those states that fail to comply with the FMP. To be in compliance, coastal states are required to implement and maintain fishery-dependent and fishery-independent monitoring programs as specified by the FMP. For Virginia, these requirements include spawning stock assessments, the collection of biological data on the spawning run (e.g., age-structure, sex ratio, and …

Testing The Applicability Of Commercial Electrofishing For Invasive Catfish In The James And York Rivers, George Earl Trice Iv

Reports

The project documented the effectiveness of commercially harvesting invasive Ictaurids in the James and York Rivers using low-frequency electrofishing. The two species harvested were blue catfish (Ictalurus furcatus) and flathead catfish (Pylodictisolivaris).

The Effects Of Saltwater Intrusion On Methanogen Community Abundance, Structure, And Activity, Jaimie Gillespie

Theses and Dissertations

Tidal freshwater wetlands (TFW) are at significant risk of loss or alteration due to global climate change, and saltwater intrusion from sea level rise is of particular concern for these habitats due to their proximity to coastal areas. A space-for-time model was used to investigate the effects of saltwater intrusion on soil methanogen communities along naturally occurring salinity gradients on the Waccamaw, James, and Hudson Rivers. Amplification of the methyl coenzyme-M reductase (mcrA) functional gene was used in qPCR, reverse transcription qPCR, and T-RFLP to measure the abundance, activity, and community composition of soil methanogens. Both the abundance and activity …

Monitoring Relative Abundance Of American Shad In Virginia Rivers 2012 Annual Report, Eric J. Hilton, Rob Latour, Brian Watkins, Ashleigh Magee

Reports

Concern about the decline in landings of American shad (Alosa sapidissima) along the Atlantic coast prompted the development of an interstate fisheries management plan (FMP) under the auspices of the Atlantic States Marine Fisheries Management Program (ASMFC 1999). Legislation enables imposition of federal sanctions on fishing in those states that fail to comply with the FMP. To be in compliance, coastal states are required to implement and maintain fishery-dependent and fishery-independent monitoring programs as specified by the FMP. For Virginia, these requirements include spawning stock assessments, the collection of biological data on the spawning run (e.g., age-structure, sex ratio, and …

Monitoring Relative Abundance Of American Shad In Virginia Rivers 2011 Annual Report, Eric J. Hilton, Rob Latour, Brian Watkins, Ashleigh Magee

Reports

Concern about the decline in landings of American shad (Alosa sapidissima) along the Atlantic coast prompted the development of an interstate fisheries management plan (FMP) under the auspices of the Atlantic States Marine Fisheries Management Program (ASMFC 1999). Legislation enables imposition of federal sanctions on fishing in those states that fail to comply with the FMP. To be in compliance, coastal states are required to implement and maintain fishery-dependent and fishery-independent monitoring programs as specified by the FMP. For Virginia, these requirements include spawning stock assessments, the collection of biological data on the spawning run (e.g., age-structure, sex ratio, and …

Composition Of Suspended And Benthic Particulate Matter In The Tidal Freshwater James River, Anne Schlegel

Theses and Dissertations

Investigating linkages between the compositions of suspended (seston) and benthic particulate matter is important to the understanding of organic matter (OM) cycling and nutrient retention in aquatic systems. We compared the quantity and quality of the truly suspended (TS) and settleable (SB) fractions of seston as well as benthic particulate matter in the tidal freshwater James River, Virginia. The mass of seston and OM was consistently higher in the TS fraction compared to the SB fraction. OM was preferentially retained in the TS fraction relative to seston. The proportional contribution of OM constituents (chlorophyll a, particulate organic carbon and nitrogen) …

Monitoring Relative Abundance Of American Shad In Virginia Rivers 2010 Annual Report, Eric J. Hilton, Rob Latour, Brian Watkins, Ashleigh Magee

Reports

Concern about the decline in landings of American shad (Alosa sapidissima) along the Atlantic coast prompted the development of an interstate fisheries management plan (FMP) under the auspices of the Atlantic States Marine Fisheries Management Program (ASMFC 1999). Legislation enables imposition of federal sanctions on fishing in those states that fail to comply with the FMP. To be in compliance, coastal states are required to implement and maintain fishery-dependent and fishery-independent monitoring programs as specified by the FMP. For Virginia, these requirements include spawning stock assessments, the collection of biological data on the spawning run (e.g., age-structure, sex ratio, and …

Monitoring Relative Abundance Of American Shad In Virginia Rivers 2009 Annual Report, John E. Olney, Brian Watkins, Eric J. Hilton

Reports

Concern about the decline in landings of American shad (Alosa sapidissima) along the Atlantic coast prompted the development of an interstate fisheries management plan (FMP) under the auspices of the Atlantic States Marine Fisheries Management Program (ASMFC 1999). Legislation enables imposition of federal sanctions on fishing in those states that fail to comply with the FMP. To be in compliance, coastal states are required to implement and maintain fishery-dependent and fishery-independent monitoring programs as specified by the FMP. For Virginia, these requirements include spawning stock assessments, the collection of biological data on the spawning run (e.g., age-structure, sex ratio, and …

Zooplankton Abundance, Community Composition And Grazing In The James River Estuary (Virginia, Usa), Laura E. Barry

Theses and Dissertations

This study examined the extent to which zooplankton in the James River Estuary (Virginia, USA) exploit the available algal-food resources. Zooplankton abundance, community composition and grazing rates were assessed at three locations which included a site with high algal production (near the VCU Rice Center) and two sites where algal production was lower. Grazing rates were measured by determining the rate of phytoplankton decline (as chlorophyll a) during 48-hour incubation experiments in the presence and absence of zooplankton. Significant differences in zooplankton abundance were observed among the three sites, with the greatest average zooplankton density (434 ± 69 ind/L) occurring …

Monitoring Relative Abundance Of American Shad In Virginia Rivers 2008 Annual Report, John E. Olney, Brian Watkins

Reports

Concern about the decline in landings of American shad (Alosa sapidissima) along the Atlantic coast prompted the development of an interstate fisheries management plan (FMP) under the auspices of the Atlantic States Marine Fisheries Management Program (AS

Atlantic Sturgeon Spawning Habitat On The James River, Virginia, Donna M. Bilkovic, Kory Angstadt, David Stanhope

Reports

No abstract provided.

Monitoring Relative Abundance Of American Shad In Virginia Rivers 2007 Annual Report, John E. Olney, Brian Watkins

Reports

Concern about the decline in landings of American shad (Alosa sapidissima) along the Atlantic coast prompted the development of an interstate fisheries management plan (FMP) under the auspices of the Atlantic States Marine Fisheries Management Program (ASMFC 1999). Legislation enables imposition of federal sanctions on fishing in those states that fail to comply with the FMP. To be in compliance, coastal states are required to implement and maintain fishery-dependent and fishery-independent monitoring programs as specified by the FMP. For Virginia, these requirements include spawning stock assessments, the collection of biological data on the spawning run (e.g., age-structure, sex ratio, and …

Justice Delayed: A Tribal Attorney’S Perspective On Elwha River Dam Removal And Ecosystem Restoration, Russell W. Busch

The Future of Natural Resources Law and Policy (Summer Conference, June 6-8)

Presenter: Russell W. Busch, Attorney for the Lower Elwha Klallam Tribe

10 pages.

Monitoring Relative Abundance Of American Shad In Virginia Rivers 2006 Annual Report, John E. Olney, Kristen Delano Walter

Reports

Concern about the decline in landings of American shad (Alosa sapidissima) along the Atlantic coast prompted the development of an interstate fisheries management plan (FMP) under the auspices of the Atlantic States Marine Fisheries Management Program (ASMFC 1999). Legislation enables imposition of federal sanctions on fishing in those states that fail to comply with the FMP. To be in compliance, coastal states are required to implement and maintain fishery-dependent and fishery-independent monitoring programs as specified by the FMP. For Virginia, these requirements include spawning stock assessments, the collection of biological data on the spawning run (e.g., age-structure, sex ratio, and …

Phytoplankton Productivity In The Tidal Regions Of Four Chesapeake Bay (U.S.A.) Tributaries, Kneeland K. Nesius, Harold G. Marshall, Todd A. Egerton

Virginia Journal of Science

Monthly and annual phytoplankton productivity rates of four Virginia tidal rivers were determined based on a 12-year monitoring study that included sampling stations from tidal freshwater, oligohaline, and mesohaline regions in these rivers. The mean monthly rates and range at these locations were 5.52 (Dec.) to 175.12 (Aug.) mg C m^-3 h^-1 for tidal freshwater, 12.21 (Jan.) to 149.90 (May) mg C m^-3 h^-1 in oligohaline regions, and 16.20 (Jan.) to 151.33 (May) mg C m^-3 h^-1 for the mesohaline. The estimated mean annual 12 year productivity for the different Virginia river sites in …

Phytoplankton Productivity In The Tidal Regions Of Four Chesapeake Bay (Usa) Tributaries, Kneeland K. Nesius, Harold G. Marshall, Todd A. Egerton

Biological Sciences Faculty Publications

Monthly and annual phytoplankton productivity rates of four Virginia tidal rivers were determined based on a 12-year monitoring study that included sampling stations from tidal freshwater, oligohaline, and mesohaline regions in these rivers. The mean monthly rates and range at these locations were 5.52 (Dec.) to 175.12 (Aug.) mg C m^-3 h^-1 for tidal freshwater, 12.21 (Jan.) to 149.90 (May) mg C m^-3 h^-1 in oligohaline regions, and 16.20 (Jan.) to 151.33 (May) mg C m^-3 h^-1 for the mesohaline. The estimated mean annual 12 year productivity for the different Virginia river sites in …

Monitoring Relative Abundance Of American Shad In Virginia Rivers 2005 Annual Report, John E. Olney, Kristen A. Delano

Reports

Concern about the decline in landings of American shad (Alosa sapidissima) along the Atlantic coast prompted the development of an interstate fisheries management plan (FMP) under the auspices of the Atlantic States Marine Fisheries Management Program (ASMFC 1999). Legislation enables imposition of federal sanctions on fishing in those states that fail to comply with the FMP. To be in compliance, coastal states are required to implement and maintain fishery-dependent and fishery-independent monitoring programs as specified by the FMP. For Virginia, these requirements include spawning stock assessments, the collection of biological data on the spawning run (e.g., age-structure, sex ratio, and …

Monitoring Relative Abundance Of American Shad In Virginia Rivers 2004 Annual Report, John E. Olney

Reports

Concern about the decline in landings of American shad (Alosa sapidissima) along the Atlantic coast prompted the development of an interstate fisheries management plan (FMP) under the auspices of the Atlantic States Marine Fisheries Management Program (ASMFC 1999). Legislation enables imposition of federal sanctions on fishing in those states that fail to comply with the FMP. To be in compliance, coastal states are required to implement and maintain fishery-dependent and fishery-independent monitoring programs as specified by the FMP. For Virginia, these requirements include spawning stock assessments, the collection of biological data on the spawning run (e.g., age-structure, sex ratio, and …

Monitoring Relative Abundance Of American Shad In Virginia’S Rivers 2003 Annual Report, John E. Olney

Reports

Concern about the decline in landings of American shad (Alosa sapidissima) along the Atlantic coast prompted the development of an interstate fisheries management plan (FMP) under the auspices of the Atlantic States Marine Fisheries Management Program (AS