Life Sciences Commons^™

Soy- Based Flexographic Ink For Linerboard Printing, Rahul Ramchandra Pingale

Masters Theses

Many printing inks use volatile solvents in the formulation, which are hazardous to the environment from emission of VOC’s and at the same time, synthetic resins in these inks are not biodegradable. These problems with the fluctuating and rising price of petroleum are main reasons to look for new resources for making more environmentally friendly printing inks. The majority of the commercially available water based inks are formulated based on using acrylic resins, synthetic colorants, solvents/water and additives, which are the common main components for formulating printing inks. In this research, soy proteins were tested for their suitability to partially …

Evaluating The Toxicity And Formation Of Halobenzoquinones In Point-Of-Use Chlorinated Drinking Water, Stephanie Hung

Masters Theses

Chlorine has effectively reduced the prevalence of waterborne diseases, however there are secondary consequences to this public health advancement. Disinfection byproducts (DBPs) are chemicals formed when chlorine reacts with natural organic matter (NOM) in water. A new class of DBPs, halobenzoquinones (HBQs), has recently been identified and data suggests it could be potentially carcinogenic and up to 1000 times more toxic than some regulated DBPs. So far, in vitro studies have assessed HBQ toxicity without taking into account its transformation in cell media into potentially less toxic compounds. This study evaluated the toxic effects of one HBQ, 2,6-DCBQ, and its …

Use Of Alamarblue As An Indicator Of Microbial Growth In Turbid Solutions For Antimicrobial Evaluation, Precious Henshaw

Masters Theses

The use of antibiotics in animal feed is a large cause of concern due to bacterial resistance, which occurs when bacteria change after exposure to antibiotics and become less affected by the drug. Consequently, the desire to find a replacement for these antibiotics has garnered interest in both farmers and consumers. The ideal substance would display antimicrobial activity without promoting bacterial resistance and would still function as a growth promoter in animals. One antimicrobial that fits this criterion is carvacrol, a compound found in oregano extract. Carvacrol exhibits antimicrobial activity in a number of bacteria, including E.coli O157:H7 and S. …

Feronia-Related Receptor Kinase 7 And Feronia And Their Role In Receiving And Transducing Signals, David Vyshedsky

Masters Theses

Receptor kinases (RKs) are transmembrane proteins that have been shown to regulate an array of important processes in A. thaliana, including polar cell growth, plant reproduction, and many other plant growth processes. In this thesis, I examine RECEPTOR KINASE 7 (RK7) and FERONIA (FER), two closely related transmembrane RKs, and their effects on plant reproduction. The RK7 gene when knocked out (rk7) in conjunction with FER resulted in delayed plant growth, decreased seed yield, and a lower percentage of the seeds germinating as compared to the single FER knockout. Transgenic plants with GUS reporter driven by RK7 promoter …

Influences Of Antroquinonol And 4-Acetylantroquinonol B On Inflammatory Tumorigenesis In The Mcf-7 Breast Cancer Cell Line With Or Without Tnf-Α Stimulation, Ting-Chun Lin

Masters Theses

Breast cancer (BC) is one of the most common cancers among women worldwide that ~25% of new cancer cases diagnosed every year would be BC; moreover, ~15% of cancer deaths per year caused by BC makes it the leading cause of cancer death among women worldwide. To date, though the cause of a large proportion of BC are still unclear, recent studies have revealed that a supportive breast tissue microenvironment is critical for the development and progression of BC, especially the communication with immune cells within breast tissue. Therefore, breast inflammatory microenvironment is currently received a substantial attention in the …

Understanding The Thermal Stability And Environmental Sensitivity Of Phycocyanin Using Spectroscopic And Modelling Tools, Cally Toong

Masters Theses

Phycocyanin (PC), a pigment-protein conjugate from Arthrospira platensis, is increasingly used in foods as a natural alternative to artificial blue dyes. Although PC has been classified as a color additive exempt from certification by the Food and Drug Administration, its limited stability has hindered its widespread application in food products. The objectives of this study were: a) to evaluate the photophysical properties of PC and their sensitivity to temperature, viscosity, and water activity, b) to monitor PC’s thermal degradation based on changes in the optical properties of its intrinsic fluorophores, namely its chromophores and aromatic amino acids, and c) to …

Application And Evaluation Of Lighthouse Technology For Precision Motion Capture, Soumitra Sitole

Masters Theses

This thesis presents the development towards a system that can capture and quantify motion for applications in biomechanical and medical fields demanding precision motion tracking using the lighthouse technology. Commercially known as SteamVR tracking, the lighthouse technology is a motion tracking system developed for virtual reality applications that makes use of patterned infrared light sources to highlight trackers (objects embedded with photodiodes) to obtain their pose or spatial position and orientation. Current motion capture systems such as the camera-based motion capture are expensive and not readily available outside of research labs. This thesis provides a case for low-cost motion capture …

Development And Application Of A Sers Needle For One-Step Multi-Phase Analysis, Haoxin Chen

Masters Theses

Surface-enhanced Raman spectroscopy (SERS) is an emerging and sensitive technique in food analysis providing advantages of rapid detection, simple sample preparation and on-site detection capability over GC and LC methods. Most SERS applications focus on detecting trace amount of analyte in liquid as an alternative approach to HPLC. Herein, we invented an innovative SERS-active needle which is composed with an injection needle and a gold-nanoparticles coated fiber inside the injection needle. The gold nanoparticles-coated fiber was fabricated by reducing gold (III) on a chemically etched stainless wire. The SERS needle can be used to insert into the headspace and liquid …

Modulation Of The Redox Environment During Sensitive Developmental Periods Impairs Pancreatic Organogenesis In The Zebrafish (Danio Rerio), Haydee Jacobs

Masters Theses

The developing pancreas has been identified as a potentially sensitive target for oxidative damage caused by environmental toxicant exposure in the developing zebrafish, Danio rerio. The objectives of this study were to 1) investigate the effects of exposure to a common pro-oxidizing toxicant, Mono(2-ethylhexyl) phthalate (MEHP), on pancreatic development, and 2) elucidate redox-sensitive temporal windows of pancreatic organogenesis in the zebrafish. We also investigated the involvement of Nrf2 (Nfe2l2), a transcription factor involved in the oxidative stress response, in toxicant-mediated pancreatic toxicity. In aim one, zebrafish embryos were exposed to 0 or 200 µg/L MEHP beginning at 3 hours post …

Real-Time Dengue Forecasting In Thailand: A Comparison Of Penalized Regression Approaches Using Internet Search Data, Caroline Kusiak

Masters Theses

Dengue fever affects over 390 million people annually worldwide and is of particu- lar concern in Southeast Asia where it is one of the leading causes of hospitalization. Modeling trends in dengue occurrence can provide valuable information to Public Health officials, however many challenges arise depending on the data available. In Thailand, reporting of dengue cases is often delayed by more than 6 weeks, and a small fraction of cases may not be reported until over 11 months after they occurred. This study shows that incorporating data on Google Search trends can improve dis- ease predictions in settings with severely …

Plants, Parasites, And Pollinators: The Effects Of Medicinal Pollens On A Common Gut Parasite In Bumble Bees, George Locascio

Masters Theses

Declines in several pollinator species are due to a variety of factors, including pathogens. Incorporating pollinator-friendly plant species into wild and agricultural habitats could reduce the stress of pathogens if food sources act medicinally against pathogens. Previous research demonstrated one domesticated sunflower cultivar (Helianthus annuus) can dramatically reduce a gut pathogen (Crithidia bombi) of the common eastern bumble bee, Bombus impatiens. To ascertain the breadth of this medicinal trait, we tested whether pollen from several H. annuus cultivars and four relatives could also reduce C. bombi infections in B. impatiens. We also investigated whether …

Mapping A Pup-Responsive Pathway From The Medial Preoptic Area To The Ventral Tegmental Area., Matias Andina

Masters Theses

Maternal behavior is the complex array of caregiving behaviors females display towards offspring. In rats, the transition to motherhood depends on the action of various hormones, especially estradiol near parturition, which primes the maternal circuitry to respond to pups upon first encounter at parturition with appropriate maternal behavior. Although virgin rats avoid pups, new mothers are highly motivated to interact with pups, and their maternal behavior depends on the functional interaction between the medial preoptic area (mPOA) and the ventral tegmental area (VTA). However, a precise mapping of the VTA-projecting mPOA neurons remains to be elucidated. To determine whether pup-responsive …

Exploring The Influence Of Pkc-Theta Phosphorylation On Notch1 Activation And T Helper Cell Differentiation, Grace Trombley

Masters Theses

The T cell-specific kinase, Protein Kinase C theta (PKCq) is essential to T cell activation and differentiation. PKCq integrates T cell receptor (TCR) and CD28 signaling, and ultimately activates transcription factors necessary for full T cell activation, proliferation, survival, and differentiation into T helper (Th) subsets. Th1, Th2, Th17 and Treg cells compose the four major lineages of T helper cells, differentiated from CD4 T cells, and each have different requirements for PKCq.

PKCq, itself, is regulated through phosphorylation of specific resides, including tyrosine (Y)90 and threonine (T)538. Following T cell stimulation, PKCq is phosphorylated on Y90 by the kinase, …

Clpxp-Regulated Proteins Suppress Requirement For Reca In Dam Mutants Of Escherichia Coli K-12, Amie Savakis

Masters Theses

Double strand breaks (DSB) are a common source of DNA damage in both prokaryotes and eukaryotes. If they are not repaired or are repaired incorrectly, they can lead to cell death (bacteria) or cancer (humans). In Escherichia coli, repair of DSB are typically accomplished via homologous recombination and mediated by RecA. This repair pathway, among others, is associated with activation of the SOS response. DNA adenine methyltransferase (dam) mutants have an increased number of DSB and, therefore, are notorious for being RecA-dependent for viability. Here, we show that the synthetic lethality of Δdam/ΔrecA is suppressed when clpP is removed, suggesting …

Adding Increased Value To Strawberry Puree By Adding Xylo-Oligosaccharides To Improve Health, Haochen Dai

Masters Theses

Cancer is a global risk for human wellness and health. Dietary habits could profoundly affect the risk of certain cancer, such as colorectal cancer (CRC) (Platz, 2000). CRC has listed the third leading cancer among male and female in the United States (Stewart, 2014). Surprisingly, the consumption of dietary fiber has an inverse correlation with the mortality of CRC (Song, 2018). However, most Americans do not consume enough dietary fiber to meet the recommended level of dietary fiber intake (Clemens, 2012; Lee-Kwan, 2017). Hence, it is reasonable to increase the nutrient density, i.e., dietary fiber, of current food model. Xylo-oligosaccharides …

Investigating The Role Of Rna-Binding Protein 5 In The Life Cycle Differentiation Of Trypanosoma Brucei, David Anaguano Pillajo

Masters Theses

Trypanosomatid parasites such as Trypanosoma brucei have unusual mechanisms of gene expression including polycistronic transcription, mitochondrial RNA editing and trans-splicing. Additionally, these protists rely mainly on post-transcriptional regulation where RNA-binding proteins (RBP) have shown to play a major role. RBP6 and RBP10 are two examples of RBPs that play crucial roles in procyclic and bloodstream form parasites differentiation respectively, by post-transcriptional regulation. Over-expression of RBP6 is enough to promote differentiation into metacyclic trypomastigotes that are infective to mice. However, continuous expression is required, and this pattern does not reflect the natural expression in the tsetse fly or the influence of …

A Precise Steroid-Responsive Centrifugal Feedback Projection To The Accessory Olfactory Bulb, Tal Inbar

Masters Theses

The accessory olfactory bulb (AOB) processes pheromonal signals which in turn drive social behaviors. Here we identify a tract of aromatase-expressing (arom+) fibers in the dorsal lateral olfactory tract (dLOT) which terminate in the granule cell layer (GCL) of the AOB. We utilized a retrograde tracer in aromatase reporter animals to delineate the source of these fibers. We show that these input fibers emerge almost exclusively from a contiguous population of arom+ neurons that spans the bed nucleus of the accessory olfactory tract (BAOT) and posterioventral subnucleus of the medial amygdala (MeApv). This population of neurons expresses the estrogen receptor …

The Role Of Hypothalamic Vasopressin Cells In Male Sociability And Anxiety-Linked Behavior, Prakruti Nanda

Masters Theses

The vertebrate hypothalamus is a central node within multiple interwoven neural networks that integrate external and internal cues to control homeostasis, endocrine functions and social behavior. The neuropeptide hormone arginine-vasopressin (AVP) is produced in both the supraoptic and paraventricular nuclei of the hypothalamus. Expression within these nuclei is conserved across species, and species differences in the expression of AVP and its cognate receptors correlate with differences in social behavior. As a central node within the social behavior network, chemogenetic manipulation of AVP+ cells in the paraventricular nucleus (pvn) of the hypothalamus provides a unique opportunity to investigate the relationship between …

Screening Of Commercially Available Chlorine Based Sanitizers And Their Efficacy In Reducing Microbial Load Levels Of E. Coli O157:H7 At High And Low Organic Load Environments, Paola Martinez-Ramos

Masters Theses

The presence of postharvest sanitizers has shown to be an effective approach to reducing microbial cross contamination in agricultural washing operations. However, choosing an appropriate sanitizer can be challenging due to produce commodity, processing conditions and interference with organic load. Current research shows a wide variety of methods to mimic the organic load of vegetable processing conditions, with paddle mixing and blender as the most commonly used. Controlling and understanding the physiochemical properties of wash water is key in maintaining sanitizer efficacy. The effects of simulated wash water preparation method on the physiochemical properties were tested at 0 and 50 …

Optimization Of Peracetic Acid As An Antimicrobial Agent In Postharvest Processing Wash Water, Tiah Ghostlaw

Masters Theses

The Food Safety Modernization Act (FSMA) has a regulation stating that there can be no detectable generic Escherichia coli in agricultural water. The objective of this study was to optimize the use of peracetic acid (PAA) as a mitigating strategy in postharvest processing. This project began by investigating the impact of storage temperatures on stability of a commercially available PAA sanitizer. Regression analysis showed a quadratic relationship in the concentration of PAA over 12 weeks when storing the product at 4, 20 and 37°C. Stability of the product was also investigated in the presence of organic load over time at …

Assessment Of Invasive Gypsophila Paniculata Control Methods In The Northwest Michigan Dunes, Emma K. Rice

Masters Theses

Gypsophila paniculata is an invasive species in Michigan’s northern lower peninsula and a problem invasive in much of the northern United States and Canada. Gypsophila paniculata readily outcompetes native plants in sandy, well-drained soils due to its deep taproot, which allows access to scarce resources. It reproduces and disperses mainly by seed, but the phenology of seed maturation is poorly understood. Gypsophila paniculata is of particular concern in lakeshore dunes because the areas where it is most dense are also populated by several endemic and threatened species. Despite many years of intensive management, high densities of G. paniculata persist …

14-3-3 Protein Rad24 And Its Effect On Mid1 Localization And Contractile Acto- Myosin Ring Assembly During Cytokinesis In S. Pombe, Anissa P. Grawe

Masters Theses

In animal and yeast cells, cell division (cytokinesis) is facilitated by the formation of a contractile acto-myosin ring (CAR). Proper CAR formation and constriction is heavily reliant on the temporal regulation, phosphorylation, and localization of key proteins. In the fission yeast S. pombe, Mid1 is an important dimeric CAR scaffolding protein that connects the contractile apparatus to the plasma membrane at the right place and time during cytokinesis. Mid1 is confined to both the nucleus and protein assemblies called nodes during interphase, and transitions to the cell cortex at mitotic entry as nodes mature and coalesce into the CAR. Rad24 …

Investigating Erosion And Ecological Impacts To An Urban Coldwater Stream Using Multiple Techniques, Daniel T. L. Myers

Masters Theses

Sediment pollution is a major cause of stream degradation. Our objectives were threefold. First, we assessed the impacts of environmental stressors on the structure of fish and macroinvertebrate communities across a gradient of agricultural to urban land cover in a coldwater tributary of the Grand River, Michigan, USA called Indian Mill Creek. We found that instream woody debris, streambed substrate, riffle and pool habitat variability, and riparian conditions affected aquatic macroinvertebrates along an agricultural to urban land cover gradient. We also found that variation in fish community assemblage was driven largely by stream flow and temperature regimes and could be …

Estimating Components Of Stream Metabolism Using The Free Water Dissolved Oxygen Method, Jay R. Zuidema Jr.

Masters Theses

Stream ecosystem metabolism is commonly measured in stream ecology studies in order to understand the functioning of the stream ecosystem and as an indicator of stream health. One common method for gathering the time series data required to estimate stream metabolism is the free water dissolved oxygen method, which involves measuring dissolved oxygen in freely moving water. This is accomplished by taking measurements at a single location (one-station monitoring method) or at two locations (two-station monitoring method). In conjunction with these data, a process-based model of dissolved oxygen dynamics is used to estimate gross primary production, respiration, and net production. …

Genetic Structure Of Invasive Baby’S Breath (Gypsophila Paniculata) Populations In A Michigan Dune System, Hailee B. Leimbach-Maus

Masters Theses

Invasive species can reduce biodiversity of a system by outcompeting native species for resources, changing the physical characteristics of a habitat, and altering natural disturbance regimes. Coastal sand dune ecosystems are dynamic with elevated levels of disturbance, and as such they are highly susceptible to plant invasions. The topography, geographic distribution of preferred habitat, and disturbance regime in an ecosystem can influence where an invasive plant becomes established, its dispersal patterns, and how densely it grows. One such invasion that is of major concern to the Great Lakes dune systems is baby’s breath (Gypsophila paniculata). The invasion of …

Impacts Of Sediment Dredging On Phosphorus Dynamics In A Restored Riparian Wetland, Kimberly Oldenborg

Masters Theses

Global reductions in biodiversity and water quality are having major consequences for ecosystem health and societal well-being. The restoration of riverine floodplains and wetlands provides an ideal opportunity to increase biodiversity and water quality because their hydrologic connectivity to adjacent streams and rivers promotes the formation of heterogeneous habitat while also facilitating their functioning as a nutrient sink, in general. However, many historic floodplains and riverine wetlands have been drained for the creation of agricultural land, resulting in an accumulation of nutrients in the soils. Therefore, restoration practices that hydrologically reconnect former agricultural land to an adjacent stream or river …

Effects Of Fire Season And Temperature On A Spotted Knapweed (Centaurea Stoebe) Infested Grassland, Zachery T. Pitman

Masters Theses

Invasive species, including the non-native forb Centaurea stoebe (spotted knapweed), constitute an imminent threat to degraded and restored native prairies. Considering the major threat that C. stoebe poses to imperiled prairie ecosystems, I examined the effectiveness of fire as a control agent of C. stoebe and (±)-catechin. I conducted a 2-year experiment in part of a restored tallgrass prairie community at Pierce Cedar Creek Institute in Barry County, Michigan between May and August of 2016 and 2017. My experiment consisted of individually burning 60 1-m² plots with a propane torch to achieve high (316° C) and low (103° C) temperatures …

Occupancy And Detection Of Yellow Perch In Great Lakes Coastal Wetlands, Kaitlyn M. Dykstra

Masters Theses

Accurately estimating the distribution of a species is important for managing sustainable populations of fishes. The Yellow Perch Perca flavescens is an important sport fish in the Great Lakes region and one of the most abundant fishes in Great Lakes coastal wetlands, which they commonly use for spawning and nursery habitat. Many fisheries management decisions are based on results from sampling fish assemblages, but these methods rarely account for incomplete detection (i.e., presence of a species that is not detected by sampling), which could create biased results. We applied the method of occupancy modeling, which accounts for incomplete detection, to …

Environmental Factors Influencing Amphibian Community Assemblage In Dune Wetlands On The Lake Michigan Coast, Alex H. Jouney

Masters Theses

Wetlands in dune landscapes provide important breeding habitat for amphibians along the Lake Michigan Coast. Unfortunately, these unique habitats and the corresponding amphibian metapopulations are understudied and threatened. We assessed amphibian species richness and terrestrial habitat type in 16 permanent and ephemeral wetlands along the coast of Lake Michigan in Grand Haven, MI. Wetland area, terrestrial habitat type, depth, hydroperiod, shade, and degree of isolation were measured from April to September of 2017. Nine species of amphibian were found; Green Frog (Rana clamitans melanota) and Spring Peepers (Pseudacris crucifer crucifer) were most abundant and Fowlers Toad …

Microenvironment Regulates Fusion Of Breast Cancer Cells, Peiran Zhu

Masters Theses

Fusion of cancer cells has been observed in tumors for more than a century and is thought to contribute to tumor development and drug resistance. The low frequency of cell fusion events and the instability of fused cells have hindered our ability to understand the molecular mechanisms that govern cell fusion. We have developed a patterned gel system that can isolate cell fusion events and we demonstrate that several breast cancer cell lines can fuse into multinucleated giant cells in vitro, and the initiation and longevity of fused cells can be regulated solely by biophysical factors. Dynamically tuning the adhesive …