Life Sciences Commons^™

Four Types Of Activities That Affect Animals: Implications For Animal Welfare Science And Animal Ethics Philosophy, D. Fraser, A. M. Macrae

David Fraser, PhD

People affect animals through four broad types of activity: (1) people keep companion, farm, laboratory and captive wild animals, often while using them for some purpose; (2) people cause deliberate harm to animals through activities such as slaughter, pest control, hunting, and toxicology testing; (3) people cause direct but unintended harm to animals through crop production, transportation, night-time lighting, and many other human activities; and (4) people harm animals indirectly by disturbing ecological systems and the processes of nature, for example by destroying habitat, introducing foreign species, and causing pollution and climate change. Each type of activity affects vast numbers …

Nbpmf: Novel Network-Based Inference Methods For Peptide Mass Fingerprinting, Zhewei Liang

Electronic Thesis and Dissertation Repository

Proteins are large, complex molecules that perform a vast array of functions in every living cell. A proteome is a set of proteins produced in an organism, and proteomics is the large-scale study of proteomes. Several high-throughput technologies have been developed in proteomics, where the most commonly applied are mass spectrometry (MS) based approaches. MS is an analytical technique for determining the composition of a sample. Recently it has become a primary tool for protein identification, quantification, and post translational modification (PTM) characterization in proteomics research. There are usually two different ways to identify proteins: top-down and bottom-up. Top-down approaches …

Histomonas Elisa, Jessica L Martinez

EURēCA: Exhibition of Undergraduate Research and Creative Achievement

Histomonas meleagridis is a protozoan parasite of avians and is the causative agent in Histomonosis, commonly known as Blackhead Disease. Current methods for diagnosing the presence of H. meleagridis are limited to parasite culture or Polymerase Chain Reaction (PCR) to amplify target DNA. This project aims to develop an enzyme-linked immunosorbent assay (ELISA) for faster and more sensitive diagnosis of Histomonas infections. Cultures of H. meleagridis parasites were purified, and surface antigens were extracted using a spectrum of chemical solutions. The various antigen solutions were subjected to an ELISA, with serum from birds immunized for H. meleagridis as positive controls. …

Evolution, Function And Deconstructing Histories: A New Generation Of Anthropological Genetics, Omer Gokcumen

Human Biology Open Access Pre-Prints

Introduction to the Special Issue, mainly based on contributions by the speakers in the 2016 AAAG symposium, “Ancient alleles in modern populations: Ancient structure, introgression, and variation-maintaining adaptive forces.”

Smokejumper Obituary: Rowney, Roscoe B. (Redding 1975), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

A Study On The Effect Of Noise And Vibration On Operators’ Readability Task Performance In A Mobile Driving Environment, Khan Iqbal Ahmed, Mallick Z., Khan Zahid A.

ASEAN Journal on Science and Technology for Development

This paper presents a study in which the effect of noise and vibration on the task performance in a mobile driving environment is experimentally investigated. A readability kind of task, where a reading material was presented to the operators on a laptop screen was considered and the operators performed the task in a sitting posture without their back supported with the backrest of the seat. The task performance was measured in terms of mean number of characters read per minute by the operators, which served as data for statistical analysis. Results of the study showed that noise and vibration were …

Effects Of Sr Substitution On Crystalline Structure And Raman Spectra Of La2-Xsrxnio4+Δ, Thanh Tran Dang, Hong Le Van

ASEAN Journal on Science and Technology for Development

Effects of Sr2+ substitution for La3+ on oxygen concentration and structure of La2-xSrxNiO4+δ have been observed by X-ray diffraction and Raman scattering. Oxygen concentration and unit cell volume of the material decrease monotonously in dependence of x. The vibration modes were calculated for La2NiO4 in K2NiF4 type structure with the group symmetry of I4/mmm. The Raman active modes for this symmetry were also theoretically identified. Raman back scattering spectra have been carried out for all the ceramic polycrystalline samples at room temperature. Two Raman lines at 224.6 cm-1 and 433 cm-1 , assigned to Eg and A1g vibration modes of …

Study On Some Properties And Morphology Of Composites Based On Polyethylene Grafted Acrylic Acid/Ethylene-Vinyl Acetate Copolymer/Calcium Carbonate, Hoang Thai, Cong Do Van

ASEAN Journal on Science and Technology for Development

Composites based on polyethylene grafted acrylic acid (PE-g-AAc)/ethylene-co-vinylacetate copolymer (EVA)/calcium carbonate (CaCO3) were prepared by melt mixing. Relative melt viscosity, morphology, mechanical properties and thermostability of the composites were studied. The experimental results show that the presence of (CaCO3) activated by stearic acid (10-20 wt.%) changes lightly stable torque of polymer blend of PE-g-AAc/EVA. Use of modified PE improves compatibility of PE and EVA as well as makes the components disperse into each other better than in blends using unmodified PE. Tensile strength and elongation at break of both polymer blends decrease with presence of CaCO3. However, tensile strength of …

Effect Of Injector Opening Pressure On Performance And Emission Of Lpg - Methyl Ester Of Mahua Oil Dual Fuel Engine, Kapilan N.

ASEAN Journal on Science and Technology for Development

One of variables, which affect the performance and emission of dual fuel engine is injection pressure. Hence in the present work, effect of Injector opening pressure on the performance of the engine was studied. A four stroke single cylinder engine was modified to work in dual fuel mode. Three injector opening pressures (180 bar, 200 bar and 220 bar) were considered for the present work. Methyl ester of mahua oil was used as pilot fuel and LPG was used as primary fuel. From the test results, it was observed that the injector opening pressure of 200 bar results in higher …

Characterization Of Alginate Prepared From Brown Seaweeds In Thua Thien-Hue Province, Vietnam, Thien Tran Vinh, Kinh Chu Dinh, Hoa Tran Thai, Khieu Dinh Quang

ASEAN Journal on Science and Technology for Development

The characterization of alginate prepared from brown seaweeds in TT-Hue province of Vietnam was investigated. Composition and the sequential structure of alginate were determined by 1HNMR, 13C-NMR, TOCSY, 1H-1H COSY, and 1H-13C-HSQC spectrum. It is found that alginate with molecular weight around 101 KDa is composed of homopolymeric regions of M and G blocks, interspersed with very small amount of regions of alternating structure of MG block. This information is essential for application guideline of alginate in TT-Hue province.

Classification And Zoning Of Water Quality For Three Main Rivers In Binh Tri Thien Region (Central Vietnam) Based On Water Quality Index, Hop Nguyen Van, To Thuy Chau, Tung Truong Quy

ASEAN Journal on Science and Technology for Development

Huong, Thach Han and Kien Giang rivers are the important surface water sources in Thua ThienHue, Quang Tri and Quang Binh provinces, respectively (in Central Vietnam). The river water samples were taken monthly (from June 2001 to May 2002 for Kien Giang river and from January to December of 2004 for Thach Han and Huong rivers) at selected sites. The temperature, pH, conductivity (EC), salinity, turbidity (TUR), DO, COD, BOD5, nitrate, ammonia, phosphate, total solids (TS), hardness, total dissolved iron, total coliform (TC), fecal coliform (FC) and sodium adsorption ratio (SAR) of water samples were analyzed. Water quality index developed …

Principal Stresses In Non-Linear Analysis Of Bakun Concrete Faced Rockfill Dam, Ahmad Mohd Hilton, Noorzaie Jamaloddin, Al Qbadi Fayda

ASEAN Journal on Science and Technology for Development

With rapid population growth and accelerating economic development, much of the world’s WATER which requires urgent attention to ensure sustainable use. Nowadays, Concrete Faced Rockfill Dam (CFRD) is preferred among dam consultant due to its advantages. They are designed to withstand all applied loads; namely gravity load due to its massive weight and hydrostatic load due to water thrust from the reservoir. Bakun CFRD, which ranks as the second highest CFRD in the world when completed, is analyzed to its safety due to both loads mentioned earlier by using Finite Element Method. 2-D plane strain finite element analysis of non-linear …

Development Of A Broadly Protective Modified-Live Virus Vaccine Candidate Against Porcine Reproductive And Respiratory Syndrome Virus, Haiyan Sun, Aspen Workman, Fernando A. Osorio, David J. Steffen, Hiep L.X. Vu

Nebraska Center for Virology: Faculty Publications

Modified-live virus (MLV) vaccines are widely used to protect pigs against porcine reproductive and respiratory syndrome virus (PRRSV). However, current MLV vaccines do not confer adequate levels of heterologous protection, presumably due to the substantial genetic diversity of PRRSV isolates circulating in the field. To overcome this genetic variation challenge, we recently generated a synthetic PRRSV strain containing a consensus genomic sequence of PRRSV-2. We demonstrated that our synthetic PRRSV strain confers unprecedented levels of heterologous protection. However, the synthetic PRRSV strain at passage 1 (hereafter designated CON-P1) is highly virulent and therefore, is not suitable to be used as …

Chaco Canyon Dig Unearths Ethical Concerns, Katrina G. Claw, Dorothy Lippert, Jessica Bardill, Anna Cordova, Keolu Fox, Joseph M. Yracheta, Alyssa C. Bader, Deborah A. Bolnick, Ripan S. Malhi, Kimberly Tallbear, Nanibaa' A. Garrison

Human Biology Open Access Pre-Prints

The field of paleogenomics (the study of ancient genomes) is rapidly advancing with more robust methods of isolating ancient DNA and increasing access to next-generation DNA sequencing technology. As these studies progress, many important ethical issues have emerged that should be considered when ancient Native American remains, whom we refer to as ancestors, are used in research. We highlight a recent article by Kennett et al. (2017), “Archaeogenomic evidence reveals prehistoric matrilineal dynasty,” that brings several ethical issues to light that should be addressed in paleogenomics research (Kennett et al. 2017). The study helps elucidate the matrilineal relationships in ancient …

Msaabcr Operon Is Involved In Persister Cell Formation In Staphylococcus Aureus, Gyan S. Sahukhal, Shanti Pandey, Mohamed O. Elasri

Faculty Publications

Background

Persister cells comprise a phenotypic variant that shows extreme antibiotic tolerance resulting in treatment failures of bacterial infections. While this phenomenon has posed a great threat in public health, mechanisms underlying their formation in Staphylococcus aureus remain largely unknown. Increasing evidences of the presence of persister cells in recalcitrant infections underscores the great urgency to unravel the mechanism by which these cells develop. Previously, we characterized msaABCR operon that plays roles in regulation of virulence, biofilm development and antibiotic resistance. We also characterized the function of MsaB protein and showed that MsaB is a putative transcription factor that binds …

Numerical Result For Variational Inequality Problems With Equality Constraint, Loi Pham Van

ASEAN Journal on Science and Technology for Development

In this paper we present some numerical results for illustrating a theoret- ical results obtained in our investigation in the field of variational inequality problems with constraint in the form of operator equation involving monotone operator.

Electrochemical Performances And Corrosion Inhibition Of Aa6061 In Tropical Seawater, Rosliza R., Senin H.B., Wan Nik W.B.

ASEAN Journal on Science and Technology for Development

The corrosion performances of AA6061 aluminum alloy in tropical seawater was investigated using potentiodynamic polarization, electrochemical impedance spectroscopy (EIS) and their morphology was characterized by the scanning electron microscopy (SEM). The results showed that the presence of sodium benzoate as an inhibitor significantly decrease the corrosion current densities (i corr ), corrosion rates and double layer capacitance (C dl ), whilst increasing the polarization resistance (R p ). The scanning electron microscopy (SEM) images indicated that the mechanism of charge transfer and the formation of thin film have been taken place on the specimens.

Structural Characterization Of Agar Extracted From Six Red Seaweed Species Growing In The Coast Of Vietnam, Van Tran Thi Thanh, Ly Bui Minh, Buu Ngo Quoc, Kinh Chu Dinh

ASEAN Journal on Science and Technology for Development

Polysaccharides extracted from six red seaweed species growing in Vietnam have been studied. Characterisation of their structure by chemical and spectroscopic methods showed that all of them have a basic repeating structure of alternating 3-linked b-D-galactopyranosyl and 4-linked 3,6-anhydro a-L-galactopyranosyl units with substituted methyl ether groups. The native agar offers only weak gelling abilities owing to the 4-linked a-L-galactopyranosyl 6-sulfate as its precursor. Conversion of this unit into the corresponding 3,6-anhydride by treating with hot alkali generally led to gel strength increasing. The agars from G. fisheri and G. firma are poorly substituted, while those from G.asiatica, G.tenustipitata and G. …

Dibutyltin(Iv) Alkylcyclohexyldithiocarbamates: Spectroscopic Characterization And Crystal Structures Of Dibutyltin(Iv) N-Methyl And N-Ethylcyclohexyldithiocarbamate, Awang Normah, Baba Ibrahim, Aziz Y. Farina Abd., Yamin Bohari M.

ASEAN Journal on Science and Technology for Development

A new series of dibutyltin(IV) alkylcyclohexyldithiocarbamates of the type (C4H9)2Sn[S2CNR(C6H11)]2 (R = CH3, C2H5, i-C3H7) have been successfully synthesized using in-situ method. These compounds were characterized by elemental analysis, infrared and 13C NMR spectroscopy. A single crystal X-ray analysis of dibutyltin(IV) ethylcyclohexyldithiocarbamate, (C4H9)2Sn[S2CN(C2H5)(C6H11)]2 (compound 2) showed that the system of this crystal is triclinic with space group P-1 while dibutyltin(IV) methylcyclohexyldithiocarbamate, (C4H9)2Sn[S2CN(CH3)(C6H11)]2 (compound 1) has monoclinic system and it’s space group is P21/c. In the crystal structure of compound 2, the dithiocarbamate ligands are bidentically chelated to the tin atom with non-equivalent of the Sn-S distances: Sn(1)-S(1) = 2.9255(11) and …

Deformation Of Wood In Compression During Moisture Movement, Hamdan S., Osman M.S., Chew M.Y.

ASEAN Journal on Science and Technology for Development

This work presents the phenomenon of mechano-sorptive strain in the deformation of wood during moisture content (MC) changes. A series of experiments were designed to demonstrate the greatly enhanced deformation due to the mechano-sorptive effect. The purpose of this work is to show the magnitude of mechano-sorptive creep compared to the ordinary viscoelastic creep with applied compressive load. In order to do this, several conditions were induced. They were the moisture movement with MC change, moisture movement without MC change and conditions without moisture movement. Several apparatus were assembled to produce the desired conditions. Special care is taken to make …

Aromatase Inhibitory And Cytotoxic Activities Of Chemical Constituents From The Vietnamese Medicinal Plant Ban-Chi-Lien (Scutellaria Barbata D. Don), Thao Do Thi, Huan Le Quang, Hieu Do Khac, Chien Nguyen Quyet, Hung Nguyen Van

ASEAN Journal on Science and Technology for Development

Aromatase inhibitory and cytotoxic activities were determined for apigenin, luteolin and the new diterpene named scutebarbalactone VN, which were obtained by bioassay-guided fractionation and isolation from the methanol extract of the Vietnamese medicinal plant Banchi-lien (Scutellaria barbata D. Don). In the aromatase inhibition assay, an IC50 value of 3.36 mM was found for scutebarbalactone VN, while IC50 values of 7.2 mM and 7.95 mM were found for the positive controls aminoglutethimide and b-estradiol, respectively. In the cytotoxicity assays using a panel of human cancer cell lines, scutebarbalactone VN showed promising anticancer activity with IC50 ranging from 2.15 to 8.3 mM …

Temporo-Spectral Coherent Structure Of Turbulence And Pressure Using Fourier And Wavelet Transforms, Le Thai-Hoa, Nguyen Dong-Anh

ASEAN Journal on Science and Technology for Development

Studying the spatial distribution in coherent fields such as turbulent and turbulent-induced force ones is important to model and evaluate turbulent-induced forces and response of structures on the turbulent flows. Turbulent field-based coherent function is commonly used for the spatial distribution characteristic of induced forces in the frequency domain. This paper will focus to study spectral coherent structure of turbulence and forces in not only the frequency domain using conventional Fourier transform-based coherence, but also temporo-spectral coherent one in the time-frequency plane thanks to wavelet transform-based coherence for more understanding of the turbulence and force coherences and their spatial distributions. …

The Evidence Of Non N-Glycan Linked Mannose In Exochitinase (42 Kda) From Trichoderma Harzianum Bio10671 Glycosylation, Mustafa Muskhazli, Zaman Faridah Qamaruz, Ramli Salfarina, Tohfah Nor Farizan, Ithnin Nalisha, Wallis Greg

ASEAN Journal on Science and Technology for Development

Chitinase 42 kDa produced by Trichoderma harzianum has been proven as a prime compound to be excreted onto the hyphae of the pathogen causing localised cell wall lysis at the point of interaction. This finally initiate the process of the host cell becomes empty of cytoplasm, disintegrates and shows a rapid collapse. This study investigates the existence of N-glycan linked mannose in chitinase 42 kDa produced by the Malaysian T. harzianum strain BIO10671. The chitinase 42 kDa from T. harzianum BIO10671 was initially purified using anion exchange chromatography prior to a series of experiments such as immunoblotting against the chitinase …

Genetic Differentiation In A Sample From Northern Mexico City Detected By Hla System Analysis: Impact In The Study Of Population Immunogenetics, Eva D. JuáRez CortéS, Miguel A. Contreras Sieck, AgustíN J. Arriaga Perea, Rosa M. MacíAs Medrano, Anaí Balbuena Jaime, Paola Everardo MartíNez, JoaquíN ZúÑIga, VíCtor AcuñA Alonzo, Julio Granados, Rodrigo Barquera

Human Biology Open Access Pre-Prints

The major histocompatibility complex is directly involved in the immune response and thus the genes coding for its proteins are useful markers for the study of genetic diversity, susceptibility to disease (autoimmunity and infections), transplant medicine, and pharmacogenetics, among others. The polymorphism of the system also allows researchers to use it as a proxy for population genetics analysis, such as genetic admixture and genetic structure. In order to determine the immunogenetic characteristics of a sample from the northern part of Mexico City and to use them to analyze the genetic differentiation from other admixed populations, including those from previous studies …

Characteristics Of Lithium Lanthanum Titanate Thin Films Made By Electron Beam Evaporation From Nanostructured La0.67-Xli 3xtio3 Target, Dinh Nguyen Nang, Trong Le Dinh, Long Pham Duy

ASEAN Journal on Science and Technology for Development

Bulk nanostructured perovskites of La0.67-xLi3xTiO3 (LLTO) were prepared by using thermally ball-grinding from compounds of La2O3, Li2CO3 and TiO2. From XRD analysis, it was found that LTTO materials were crystallized with nano-size grains of an average size of 30 nm. The bulk ionic conductivity was found strongly dependent on the Li+ composition, the samples with x = 0.11 (corresponding to a La0.56Li0.33TiO3 compound) have the best ionic conductivity, which is ca. 3.2 x 10-3 S/cm at room temperature. The LLTO amorphous films were made by electron beam deposition. At room temperature the smooth films have ionic conductivity of 3.5 x …

Integrated Remote Sensing And Gis For Modeling Economic Rehabilitation Development Of Ex-Mine Sites, Junaidi Junaidi, Goh Eric K.H.

ASEAN Journal on Science and Technology for Development

The potential environmental impacts of mining, increasing environmental legislation and public awareness have received increased attention world-wide in the last two decades. The focus of concern by the industry, environmental regulatory agencies and members of the public is the systematic rehabilitation of ex-mine sites to improve the quality at site for potential future commercial land use. The minerals extracted from these mine/quarry sites are essential in the construction, semiconductor, high-technology, ceramic and other manufacturing sectors for further industrial development. However, efficient engineering design and systematic economic evaluation of mine sites for site rehabilitation are required in maintaining the expected standards …

Fault Location On A Distribution Feeder Using Fault Generated High Frequency Current Signatures, Hizam Hashim, Crossley P.A.

ASEAN Journal on Science and Technology for Development

This paper describes how the fault generated travelling waves detected in the current signals at a single location on a distribution feeder can be used for fault location. The method identifies the fault section and the probable location of the fault by comparing the relative distance of each “peak” in the high frequency current signals to the known reflection points in the distribution feeder. The probable fault location is then used within a transient power system simulator that models the actual network. The resulting simulated current waveforms are then cross-correlated against the original signal. If the estimated fault location is …

Power Signal Disturbance Classification Using Wavelet Based Neural Network, Suja S., Jerome Jovitha

ASEAN Journal on Science and Technology for Development

In this paper, the power signal disturbances are detected using discrete wavelet transform (DWT) and categorized using neural networks. This paper presents a prototype of power quality disturbance recognition system. The prototype contains three main components. First a simulator is used to generate power signal disturbances. The second component is a detector which uses the technique of DWT to detect the power signal disturbances. DWT is used to extract disturbance features in the power signal. The third component is neural network architecture to classify the power signal disturbances.

Computation Of Bearing Capacity Factor Nq –Terzaghi And Prandtl Mechanism, Dewaikar D.M., Mohapatro B.G., Sawant V.A., Chore H.S.

ASEAN Journal on Science and Technology for Development

The unique values of the bearing capacity factors, Nq are obtained in respect of failure mechanisms suggested by Terzaghi and Prandtl using limit equilibrium approach. In this paper an attempt has been made to present the analysis integrating the Kotter’s equation with Terzaghi’s and Prandtl’s mechanisms using limit equilibrium conditions. The analysis presented here with some modifications in the exiting analyses computes the bearing capacity factor – Nq , the expressions of which are similar to the one given by Terzaghi [10] and Reissner [7] who had extended the pioneering work initiated by Prandtl [6]. The analysis reported here successfully …

Affine-Invariant Fourier Descriptors And Their Application In A Number Plate Recognizing System, Hai Nguyen Thanh, Long Pham The, Dinh Nguyen Cong

ASEAN Journal on Science and Technology for Development

This paper introduces a method for describing partial shapes that are affine-invariant. The proposed method facilitates the extraction of descriptors, which is effective for opened-curves and invariant to different viewpoints. This method helps to improve the performance and quality of real world object image recognizing systems. The proposed method was tested in a number plate recognition system.