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- *Cytotoxicity, Immunologic (1)
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- Anas clypeata; Great Salt Lake; migration; Northern Shoveler; stable isotopes (1)
- Anas clypeata; bioherm; Bucephala clangula; California Gull; Common Goldeneye; Eared Grebe; Great Salt Lake; Larus californicus; Larus delawarensis; Northern Shoveler; Podiceps nigricollis; Ring-billed Gull (1)
- Anthropogenic development; antipredation strategy; Centrocercus urophasianus; Greater Sage-Grouse; habitat; parental investment; survival (1)
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- Body mass; brine shrimp; diet; fisheries; Great Salt Lake; green-winged teal; northern shoveler (1)
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Articles 1 - 30 of 33
Full-Text Articles in Life Sciences
Gadph Single Molecule Mrna Fish 20141104tue, George Mcnamara
Gadph Single Molecule Mrna Fish 20141104tue, George Mcnamara
George McNamara
GADPH single molecule mRNA FISH 20141104Tue
Raw data on NVidia TITAN GPU card deconvolution using original Bruce and Butte 2013 Optics Express software running inside Fiji ImageJ.
B&B GPU Deconvolution Reference:
http://www.opticsinfobase.org/oe/fulltext.cfm?uri=oe-21-4-4766&id=249375
Acquired at 63x1x using leica plan apo 1.4 NA objective lens on Cooper lab Leica DMI6000 microscope, SOLA (initial release) LED lamp using only "green" LED, 554x Semrock exciter filter (in ASI ex wheel), Leica N3 (Cy3) filter cube, center 600 nm emission wavelength.
Hamamatsu FLASH4.0 sCMOS, 100 ms exposure time so 6.4 seconds acquisition time (64 planes X 4 seconds). Acquired with MetaMorph 7.8.8.
XY 100 nm …
Gpu Deconvolution Good Result On 2048x2048x32 Plane Z-Series (Update From Dataset 56), George Mcnamara
Gpu Deconvolution Good Result On 2048x2048x32 Plane Z-Series (Update From Dataset 56), George Mcnamara
George McNamara
GPU Deconvolution Good result on 2048x2048x32 plane Z-series (update from dataset 56)
This web page and download is
http://works.bepress.com/gmcnamara/62
Marc Bruce sent me the file here (web page 62) that is a preliminary bug fix (apparently of NVidia CUDA FFT code!!!) from the original 'raw' Z-series that is part of the
http://works.bepress.com/gmcnamara/56
web page download. Please see that web page for details on the project (GADPH single molecule mRNA detection with Stellaris FISH probe sets).
Marc is:
MARC BRUCE, PHD
CTO and Co-Founder
MICROVOLUTION, LLC
http://www.microvolution.com/
//
The 730 Mb ZIP download includes 3 files:
* 32-bit TIFF series sent …
Breeding Origins Of Northern Shovelers (Anas Clypeata) Wintering On The Great Salt Lake, Utah, Anthony J. Roberts, Michael R. Conover
Breeding Origins Of Northern Shovelers (Anas Clypeata) Wintering On The Great Salt Lake, Utah, Anthony J. Roberts, Michael R. Conover
Wildland Resources Faculty Publications
The breeding origin and migratory connectivity of wintering birds are important to address how population changes on wintering areas are impacted by changes elsewhere in the birds’ annual cycle. In addition, identifying important point sources of nutrients used throughout the annual cycle can assist managers in identifying sources of toxins or pathogens. We used stable hydrogen isotope ratios to identify breeding locations of Northern Shovelers (Anas clypeata; henceforth shoveler) wintering at the Great Salt Lake (GSL), Utah. Stable-isotope likelihood-based assignment placed the largest number of shovelers collected during winter on the GSL as breeding in the western US and southern …
Us Epa Expert Workshop: Nutrient Enrichment Indicators In Streams, Michelle A. Baker, Candice Bauer, Max Bothwell, Don Charles, Betty Fetscher, Stuart Findlay, Terry Fleming, Steve Francoeur, Evelyn Gaiser, Jim Hagy, Anne Hershey, Lisa Huff, Ryan King, Tina Laidlaw, Mark Munn, Greg Pond, Steven Rier, Bob Sinsabaugh, A J. Smith, Nathan Smucker, Jan Stevenson, Mike Suplee
Us Epa Expert Workshop: Nutrient Enrichment Indicators In Streams, Michelle A. Baker, Candice Bauer, Max Bothwell, Don Charles, Betty Fetscher, Stuart Findlay, Terry Fleming, Steve Francoeur, Evelyn Gaiser, Jim Hagy, Anne Hershey, Lisa Huff, Ryan King, Tina Laidlaw, Mark Munn, Greg Pond, Steven Rier, Bob Sinsabaugh, A J. Smith, Nathan Smucker, Jan Stevenson, Mike Suplee
Biology Faculty Publications
No abstract provided.
Diet And Body Mass Of Ducks In The Presence Of Commercial Harvest Of Brine Shrimp Cysts In The Great Salt Lake, Utah, Anthony J. Roberts, Michael R. Conover
Diet And Body Mass Of Ducks In The Presence Of Commercial Harvest Of Brine Shrimp Cysts In The Great Salt Lake, Utah, Anthony J. Roberts, Michael R. Conover
Wildland Resources Faculty Publications
Commercial fisheries and waterbirds are often in competition for available resources and may affect each other through limiting available forage for birds or reducing harvest for commercial fisheries. Relatively little is known regarding the wintering population of waterfowl on the hypersaline Great Salt Lake (GSL), Utah, but mid-winter counts indicate waterfowl use the GSL during winter coinciding with a commercial harvest of brine shrimp (Artemia franciscana) cysts (i.e., eggs). We surveyed previously unmonitored pelagic regions of GSL to estimate total wintering populations of waterfowl and collected northern shoveler (Anas clypeata) and green-winged teal (Anas crecca) during 3 nonbreeding seasons, 2009–2012, …
Timelapse Data - Gm Imaging Cytometer Needs Stitching Part 1 Of 2, George Mcnamara
Timelapse Data - Gm Imaging Cytometer Needs Stitching Part 1 Of 2, George Mcnamara
George McNamara
Timelapse data - GM imaging cytometer needs stitching part 1 of 2
Imaging challenge: align multiple time series over time to overcome "stage slop" in the imaging cytometer used in this experiment.
http://works.bepress.com/gmcnamara/53 (this)
and
http://works.bepress.com/gmcnamara/54 (next)
are zip files containing 8-bit stacks (MetaMorph multiplane TIFF files) acquired on an imaging cytometer.
"53" is the brightfield data, raw and automatic aligned stacks in MetaMorph (Apps menu, MM7.8.6).
"54" is GFP fluorescence, raw and automatic aligned stacks in MetaMorph (Apps menu, MM7.8.6). The GFP fluorescence decreases over time due to photobleaching. GFP disappears from cells when they die (soluble GFP diffusing …
Timelapse Data - Gm Imaging Cytometer Needs Stitching Part 2 Of 2, George Mcnamara
Timelapse Data - Gm Imaging Cytometer Needs Stitching Part 2 Of 2, George Mcnamara
George McNamara
Timelapse data - GM imaging cytometer needs stitching part 2 of 2
Imaging challenge: align multiple time series over time to overcome "stage slop" in the imaging cytometer used in this experiment.
http://works.bepress.com/gmcnamara/53 (previous) and http://works.bepress.com/gmcnamara/54 (this)
are zip files containing 8-bit stacks (MetaMorph multiplane TIFF files) acquired on an imaging cytometer.
"53" is the brightfield data, raw and automatic aligned stacks in MetaMorph (Apps menu, MM7.8.6). "54" is GFP fluorescence, raw and automatic aligned stacks in MetaMorph (Apps menu, MM7.8.6). The GFP fluorescence decreases over time due to photobleaching. GFP disappears from cells when they die (soluble GFP diffusing …
Pathscan Enabler At Md Anderson Cancer Center, George Mcnamara
Pathscan Enabler At Md Anderson Cancer Center, George Mcnamara
George McNamara
McNamara 20140703 - Additional Pathscan and Tiki_Goddess related resources
http://works.bepress.com/gmcnamara/52
http://home.earthlink.net/~tiki_goddess/
http://works.bepress.com/gmcnamara/1/
http://works.bepress.com/gmcnamara/11/
https://www.linkedin.com/in/georgemcnamara
Our Pathscan Enabler IV, delivered July 2014, uses the QuickScan software to scan a histology slide in "two clicks" (after loading the
slide):
1. Push the QuickScan button on the front of the Pathscan Enabler.
2. Click the Scan button in the QuickScan pop-up application (optional: change scan area in the Prescan image window).
The image gets saved as a TIFF file to the Windows 7 (64-bit) desktop.
I have been using Pathscan Enabler's since version I in 2000. See Chantrain et al 2003:
Chantrain CF, …
An Interview At Toward A Science Of Consciousness In Tuscon, Arizona. Usa 2014, Soam Prakash
An Interview At Toward A Science Of Consciousness In Tuscon, Arizona. Usa 2014, Soam Prakash
Soam Prakash
No abstract provided.
Role Of Benthic Substrate In Waterfowl Distribution On Great Salt Lake, Anthony J. Roberts, Michael R. Conover
Role Of Benthic Substrate In Waterfowl Distribution On Great Salt Lake, Anthony J. Roberts, Michael R. Conover
Wildland Resources Faculty Publications
Benthic substrate has a large impact on aquatic plant and invertebrate assemblages and likely directly or indirectly influences waterbird distributions. The association of birds with various substrates can be important in survey design or habitat management. Northern Shoveler (Anas clypeata), Common Goldeneye (Bucephala clangula), Eared Grebe (Podiceps nigricollis), Ring-billed Gull (Larus delawarensis) and California Gull (L. californicus) densities on the hypersaline Great Salt Lake, Utah, were estimated to determine the association of bird distributions with benthic substrates. Three of the four groups of species monitored had densities that varied by benthic substrate; gulls were the exception. Eared Grebes occurred at …
Tattletales And T-Bow Update 20140602mon, George Mcnamara
Tattletales And T-Bow Update 20140602mon, George Mcnamara
George McNamara
Tattletales and T-Bow Update 20140602Mon
http://works.bepress.com/gmcnamara/42
Please see also http://works.bepress.com/gmcnamara/26
Tattletales: multiplex fluorescent protein biosensors by spatial localization with TALE-FPs, Cas9-FPs, ZF-FPs, LacI-FPs, TetR-FPs, etc.
T-Bow: Rainbow T-cells and Tumor cells (and ES cells, iPS cells, other cells and organisms). You can think of this as "Brainbow meets TALENs/Cas9/ZFNs/other DNA sequence specific binding proteins".
If not familiar with Brainbow, see
http://en.wikipedia.org/wiki/Brainbow
If not familiar with TALENs, Cas9, etc, see
http://www.addgene.org/genome_engineering/
Big idea: localizing fluorescent proteins - and/or Nano-Lanterns (Take Nagai) - to tandem repeat arrays - is a great way to improve signal to noise ratio compared to the usual …
Pubspectra To Do Data, George Mcnamara
Pubspectra To Do Data, George Mcnamara
George McNamara
PubSpectra raw data that I had in my "to do" folder to add to the PubSpectra data set but never did.
PubSpectra has over 2000 spectra in it (last updated 2006) in Excel "big file" format - the XLSX file inside the zip file at
http://works.bepress.com/gmcnamara/9/
Anyone is welcome to add and organize new data yourselves. I used Un-Scan-It from Silk Scientific (www.silkscientific.com).
More importantly, I strongly adopting my PubSpectra format of 1 nm wavelength intervals, with the row number corresponding to nm. For example, 400 nm data appears in row 400.
Much of Urse Utzinger's "Spectra Arizona" data,
http://www.spectra.arizona.edu/ …
Timelapse Data - Gm Vandana 20140502fri Part 2 Of 2, George Mcnamara
Timelapse Data - Gm Vandana 20140502fri Part 2 Of 2, George Mcnamara
George McNamara
Timelapse data - GM Vandana 20140502Fri part 2 of 2
(positions 4 and 5 of 5).
Data from a project with Vandana Kaul, Univ Houston. Vandana and GM know the details of this experiment. Nikon BioStation IM, 20x effective magnification (Nikon 40x lens with de-zoom), 800x600 pixels (by 2x2 binning). Five positions (P1 ... P5), acquired at 1 frame per minute, playback 30 fps.
Videos 1, 2 and 3 are in "part 1" at
http://works.bepress.com/gmcnamara/48/
Timelapse Data - Gm Vandana 20140502fri Part 1 Of 2, George Mcnamara
Timelapse Data - Gm Vandana 20140502fri Part 1 Of 2, George Mcnamara
George McNamara
Timelapse data - GM Vandana 20140502Fri part 1 of 2
(positions 1, 2 and 3).
Data from a project with Vandana Kaul, Univ Houston. Vandana and GM know the details of this experiment. Nikon BioStation IM, 20x effective magnification (Nikon 40x lens with de-zoom), 800x600 pixels (by 2x2 binning). Five positions (P1 ... P5), acquired at 1 frame per minute, playback 30 fps.
A Partnership Approach To Protecting And Improving Water Quality In The Shellfish Watersheds Of Pierce County, Cindy Callahan, Erin Ewald, Barbara Ann Smolko, Ray Hanowell
A Partnership Approach To Protecting And Improving Water Quality In The Shellfish Watersheds Of Pierce County, Cindy Callahan, Erin Ewald, Barbara Ann Smolko, Ray Hanowell
Salish Sea Ecosystem Conference
Commercial shellfish growing is a significant economic driver on the Key Peninsula of Pierce County, Washington. In response to the downgrades of several shellfish areas in the 1990’s and early 2000’s and the establishment of Shellfish Protection Districts and Closure Response Plans, it was recognized that a more proactive approach was needed. In an effort to build cooperation and a partnership across Pierce County, and address bacterial contamination in the shellfish growing areas, a Pierce County Shellfish Partners Strategic Plan was developed and formalized in March of 2013. The partnership initially included Pierce County Surface Water Management (SWM), Pierce Conservation …
Herbaceous 2014, Julia I. Chapman, Keith E. Gilland, Ryan W. Mcewan
Herbaceous 2014, Julia I. Chapman, Keith E. Gilland, Ryan W. Mcewan
Data Files: Drew Woods Permanent Plots
Herbaceous vegetation data collected in 2014 at Drew Woods State Nature Preserve in Darke County, OH. Data key is provided in a supplemental file.
Image Z-Series Wrt Nvidia Titan 6 Gb Gpu Cuda Deconvolution, George Mcnamara
Image Z-Series Wrt Nvidia Titan 6 Gb Gpu Cuda Deconvolution, George Mcnamara
George McNamara
Image Z-series wrt NVidia Titan 6 Gb GPU CUDA Deconvolution
This ZIP file contains raw and deconvolved data series from George McNamara, Laurence J.N. Cooper lab, M.D. Anderson Cancer Center. I have also included our lab instructions, and a screenshot of the current CUDA deconvolution settings (for dry objective lenses, Manish Butte wrote me to use the immersion medium refractive index, air = 1.0).
Instrument:
Leica DMI6000 inverted fluorescence microscope, Lumencor SOLA LED light source, Leica "L5" GFP filter cube (480/40ex, 505dm, 527/30em).
Leica 20x/0.75 NA objective lens, 1.6x optovar, for 325 nm XY piel size. For this dataset, I …
Data From: Genotyping-By-Sequencing For Populus Population Genomics: An Assessment Of Genome Sampling Patterns And Filtering Approaches, Paul G. Wolf, Martin P. Schilling, Aaron M. Duffy, Hardeep S. Rai, Carol A. Rowe, Karen E. Mock, Bryce A. Richardson
Data From: Genotyping-By-Sequencing For Populus Population Genomics: An Assessment Of Genome Sampling Patterns And Filtering Approaches, Paul G. Wolf, Martin P. Schilling, Aaron M. Duffy, Hardeep S. Rai, Carol A. Rowe, Karen E. Mock, Bryce A. Richardson
Browse all Datasets
Continuing advances in nucleotide sequencing technology are inspiring a suite of genomic approaches in studies of natural populations. Researchers are faced with data management and analytical scales that are increasing by orders of magnitude. With such dramatic advances comes a need to understand biases and error rates, which can be propagated and magnified in large-scale data acquisition and processing. Here we assess genomic sampling biases and the effects of various population-level data filtering strategies in a genotyping-by-sequencing (GBS) protocol. We focus on data from two species of Populus, because this genus has a relatively small genome and is emerging …
Jibin Zhang's Ppt For Midwest Meeting.Pdf, Jibin Zhang, Yeunsu Suh, Young Min Choi, Michael E. Davis, Kichoon Lee
Jibin Zhang's Ppt For Midwest Meeting.Pdf, Jibin Zhang, Yeunsu Suh, Young Min Choi, Michael E. Davis, Kichoon Lee
Jibin Zhang
Cell Morphometry, George Mcnamara
Cell Morphometry, George Mcnamara
George McNamara
Cell Morphometry ZIP content by George McNamara
http://works.bepress.com/gmcnamara/41
Robert Murphy's TypIC (typical cell Chooser,
http://murphylab.web.cmu.edu/services/TypIC/
now superseded by PSLID and SLIF
http://murphylab.web.cmu.edu/services/ ), was a "game changer" for me with respect to cell shape analysis. Rather than trying to compute the average of (say) a triangle and a pentagon ... which might result in a square, or a rectange, or some bizarre quadrilateral ... R.M. advocated using the median. OK, in a 2 member dataset this would result in averaging the two shapes (if use the standard way to calculate median of even number datasets), but this could be avoided …
More Fish (1 Of 4), George Mcnamara
More Fish (1 Of 4), George Mcnamara
George McNamara
More Stellaris FRISH and GPU Deconvolution, 20140313Thur - part 1 of 4
Please see other content in the FISH Imaging section of
http://works.bepress.com/gmcnamara/subject_areas.html
for details on the microscope. Briefly: Leica DMI6000 inverted microscope, SOLA lamp, Hamamatsu FLASH4.0 sCMOS camera, 100 nm XY, 200 nm Z pixels, 32 planes (16 um Z), MetaMorph 7.8 acquisition software.
Four zip files:
http://works.bepress.com/gmcnamara/43
http://works.bepress.com/gmcnamara/44
http://works.bepress.com/gmcnamara/45
http://works.bepress.com/gmcnamara/46
with two dataset (001, 002), raw and deconvolved using Bruce & Butte GPU deconvolution in Fiji ImageJ,
http://www.ncbi.nlm.nih.gov/pubmed/23482010
http://www.opticsinfobase.org/vjbo/fulltext.cfm?uri=oe-21-4-4766&id=249375 (free download, as are all Optics Express papers).
http://tcell.stanford.edu/software.html
http://lists.umn.edu/cgi-bin/wa?A2=ind1312&L=confocalmicroscopy&P=5534
Note: "001 raw" (bepress 43) contains my "imaging SOP" …
More Fish (2 Of 4), George Mcnamara
More Fish (2 Of 4), George Mcnamara
George McNamara
More Stellaris FISH and GPU Deconvolution, 20140313Thur - part 2 of 4
Please see other content in the FISH Imaging section of
http://works.bepress.com/gmcnamara/subject_areas.html
for details on the microscope. Briefly: Leica DMI6000 inverted microscope, SOLA lamp, Hamamatsu FLASH4.0 sCMOS camera, 100 nm XY, 200 nm Z pixels, 32 planes (16 um Z), MetaMorph 7.8 acquisition software.
Four zip files:
http://works.bepress.com/gmcnamara/43
http://works.bepress.com/gmcnamara/44
http://works.bepress.com/gmcnamara/45
http://works.bepress.com/gmcnamara/46
with two dataset (001, 002), raw and deconvolved using Bruce & Butte GPU deconvolution in Fiji ImageJ,
http://www.ncbi.nlm.nih.gov/pubmed/23482010
http://www.opticsinfobase.org/vjbo/fulltext.cfm?uri=oe-21-4-4766&id=249375 (free download, as are all Optics Express papers).
http://tcell.stanford.edu/software.html
http://lists.umn.edu/cgi-bin/wa?A2=ind1312&L=confocalmicroscopy&P=5534
Note: "001 raw" (bepress 43) contains my "imaging SOP" …
More Fish (3 Of 4), George Mcnamara
More Fish (3 Of 4), George Mcnamara
George McNamara
More Stellaris FISH and GPU Deconvolution, 20140313Thur - part 3 of 4
Please see other content in the FISH Imaging section of
http://works.bepress.com/gmcnamara/subject_areas.html
for details on the microscope. Briefly: Leica DMI6000 inverted microscope, SOLA lamp, Hamamatsu FLASH4.0 sCMOS camera, 100 nm XY, 200 nm Z pixels, 32 planes (16 um Z), MetaMorph 7.8 acquisition software.
Four zip files:
http://works.bepress.com/gmcnamara/43
http://works.bepress.com/gmcnamara/44
http://works.bepress.com/gmcnamara/45
http://works.bepress.com/gmcnamara/46
with two dataset (001, 002), raw and deconvolved using Bruce & Butte GPU deconvolution in Fiji ImageJ,
http://www.ncbi.nlm.nih.gov/pubmed/23482010
http://www.opticsinfobase.org/vjbo/fulltext.cfm?uri=oe-21-4-4766&id=249375 (free download, as are all Optics Express papers).
http://tcell.stanford.edu/software.html
http://lists.umn.edu/cgi-bin/wa?A2=ind1312&L=confocalmicroscopy&P=5534
Note: "001 raw" (bepress 43) contains my "imaging SOP" …
More Fish (4 Of 4), George Mcnamara
More Fish (4 Of 4), George Mcnamara
George McNamara
More Stellaris FISH and GPU Deconvolution, 20140313Thur - part 4 of 4
Please see other content in the FISH Imaging section of
http://works.bepress.com/gmcnamara/subject_areas.html
for details on the microscope. Briefly: Leica DMI6000 inverted microscope, SOLA lamp, Hamamatsu FLASH4.0 sCMOS camera, 100 nm XY, 200 nm Z pixels, 32 planes (16 um Z), MetaMorph 7.8 acquisition software.
Four zip files:
http://works.bepress.com/gmcnamara/43
http://works.bepress.com/gmcnamara/44
http://works.bepress.com/gmcnamara/45
http://works.bepress.com/gmcnamara/46
with two dataset (001, 002), raw and deconvolved using Bruce & Butte GPU deconvolution in Fiji ImageJ,
http://www.ncbi.nlm.nih.gov/pubmed/23482010
http://www.opticsinfobase.org/vjbo/fulltext.cfm?uri=oe-21-4-4766&id=249375 (free download, as are all Optics Express papers).
http://tcell.stanford.edu/software.html
http://lists.umn.edu/cgi-bin/wa?A2=ind1312&L=confocalmicroscopy&P=5534
Note: "001 raw" (bepress 43) contains my "imaging SOP" …
P-19 Hcnabc Operon Transcription Of Pseudomonas Putida Under Varying Iron And Oxygen Concentrations And Culture Age, Christine Lee
P-19 Hcnabc Operon Transcription Of Pseudomonas Putida Under Varying Iron And Oxygen Concentrations And Culture Age, Christine Lee
Honors Scholars & Undergraduate Research Poster Symposium Programs
The species Pseudomonas putida produces hydrogen cyanide (HCN) through the transcription of the hcnABC operon. The purpose of this experiment is to determine how the hcnABC operon is affected by varying levels of iron and oxygen, and age of bacteria culture. To test this, P. putida is grown under five conditions: the presence of iron, the absence of iron, with aeration, without aeration, and without iron and aeration. At 8, 18, and 30 hours, the cultures are assessed for HCN production and cell density. HCN production is measured via bioluminescence; light emission occurs whenever HCN is produced because the modified …
Greater Sage-Grouse (Centrocercus Urophasianus) Hen Survival: Effects Of Raptors, Anthropogenic And Landscape Features, And Hen Behavior, Jonathan B. Dinkins, Michael R. Conover, Christopher P. Kirol, Jeffrey L. Beck, Shandra Nicole Frey
Greater Sage-Grouse (Centrocercus Urophasianus) Hen Survival: Effects Of Raptors, Anthropogenic And Landscape Features, And Hen Behavior, Jonathan B. Dinkins, Michael R. Conover, Christopher P. Kirol, Jeffrey L. Beck, Shandra Nicole Frey
Wildland Resources Faculty Publications
Survival of breeding-age hens has been identified as the demographic rate with the greatest potential to influence population growth of Greater Sage-Grouse (Centrocercus urophasianus (Bonaparte, 1827); hereafter “Sage-Grouse”). During 2008–2011, we collected summer survival data from 427 Sage-Grouse hens in southern Wyoming, USA. We assessed the effects of raptor densities, anthropogenic features, landscape features, and Sage-Grouse hen behavior on Sage-Grouse hen survival. Survival of Sage-Grouse hens was positively associated with the proportion of big sagebrush (genus Artemisia L.) habitat within 0.27 km radius and road density and negatively associated with power-line density, proximity to forested habitat, and topographic ruggedness index …
3b Project Data - Raw Tiff Series And Cropped Series, George Mcnamara
3b Project Data - Raw Tiff Series And Cropped Series, George Mcnamara
George McNamara
Fluorescence microscopy data acquired for 3B Bayesian localization microscopy.
Settings: 100 nm XY pixel size. 50 millisecond exposures, MetaMorph stream acquisition mode (as fast as possible). Stellaris FISH mammalian cells labeled with Quasar 670 fluorophores, one molecule per 20mer FISH probe, ~48 probes to TOP1 mRNA (Topoisomerase 1).
More on the 3B project and Stellaris FISH data at http://works.bepress.com/gmcnamara/38/
and at Susan Cox's web sites http://www.coxphysics.com/3b/ http://superresolved.com/
Communication About Attention Deficit Disorder During Pediatric Asthma Visits, Betsy Sleath, Sandra H. Sulzer, Delesha M. Carpenter, Catherine Slota, Christopher Gillette, Stephanie Davis
Communication About Attention Deficit Disorder During Pediatric Asthma Visits, Betsy Sleath, Sandra H. Sulzer, Delesha M. Carpenter, Catherine Slota, Christopher Gillette, Stephanie Davis
Kinesiology and Health Science Faculty Publications
The objectives of the study were to examine provider-family communication about attention deficit disorder during pediatric asthma visits. Children with asthma, aged 8 through 16 and their parents were recruited at five pediatric practices. All medical visits were audio-taped. There were 296 asthmatic children enrolled into the study and 67 of them also had attention deficit hyperactivity disorder (ADHD). ADHD communication elements suggested by national guidelines were discussed infrequently. Providers were more likely to discuss, educate, and ask one or more questions about ADHD medications if the visit was non-asthma related. Providers included child input into the ADHD treatment regimen …
Time Series Data For 3b Image Processing, George Mcnamara
Time Series Data For 3b Image Processing, George Mcnamara
George McNamara
Time series data for 3B image processing
Four time series data sets of Stellaris single molecules RNA FISH (fluorescence in situ hybridization). All four datasets are 301 imaqe planes. FISH probes are to TOP1 mRNA (Topoisomerase I)in Saos osterosarcoma cells.
One dataset is 10 millisecond exposures (very dim), acquired in Streaming acquisition mode (no hardware overhead).
The other three datasets are a three consecutive planes of the same XY field of view.
I have included image processing results for:
PiMP - a fast method developed by Sebastian Munck et al 2012, http://www.ncbi.nlm.nih.gov/pubmed/?term=22357945
and greatly improved performance by Glen Macdonald (Seattle). …
Blood Vessel Z-Series Image Data Set From Confocal Microscopy 2013 Book, George Mcnamara
Blood Vessel Z-Series Image Data Set From Confocal Microscopy 2013 Book, George Mcnamara
George McNamara
Blood Vessel Z-series image data set from Confocal Microscopy 2013 book chapter:
McNamara G, Yanai A, Khankaldyyan V, Laug WE, Boden J, Webster K, Li Y, Wen R. Low magnification confocal microscopy of tumor angiogenesis. Methods Mol Biol. 2014; 1075: 149-75.
doi: 10.1007/978-1-60761-847-8_6. PubMed PMID: 24052350.
See also:
Jeffrey Boden, Jianqin Wei, George McNamara, Hans Layman, Midhat Abdulreda, Fotios Andreopoulos, and Keith A. Webster. Whole-mount imaging of the mouse hindlimb vasculature using the lipophilic carbocyanine dye DiI. Biotechniques Rapid Dispatches, July 2012, pp. 1–4
http://www.biotechniques.com/rapiddispatches/Whole-mount-imaging-of-the-mouse-hindlimb-vasculature-using-the-lipophilic-carbocyanine-dye-DiI./biotechniques-333144.html
Supplemental file:
http://www.biotechniques.com/multimedia/archive/00182/BTNRD-BM-WebsterSUP_182355a.pdf
You may find useful to download Leica LAS AF Lite from
ftp://ftp.llt.de/softlib/LAS_AF_Lite/ …