Life Sciences Commons^™

U.S. Drought Monitor, December 31, 2013, Matthew Rosencrans

United States Agricultural Commodities in Drought Archive

Drought map of U.S. for December 31, 2013 (12/31/13) plus: U.S. crop areas experiencing drought (map), Approximate percentage of crop located in drought, by state (bar graph), Percent of crop area located in drought, past 52 weeks (line graph) for: Corn, Soybeans, Hay, Cattle, Winter wheat.

U.S. Drought Monitor, December 24, 2013, Matthew Rosencrans

United States Agricultural Commodities in Drought Archive

Drought map of U.S. for December 24, 2013 (12/24/13) plus: U.S. crop areas experiencing drought (map), Approximate percentage of crop located in drought, by state (bar graph), Percent of crop area located in drought, past 52 weeks (line graph) for: Hay, Cattle, Winter wheat.

Table Of Contents, Michele Harmon

Journal of the South Carolina Academy of Science

No abstract provided.

Dose Dependent Effects Of Caffeine On Cognitive Performance And Neuronal Activation, Stephan Albrecht, Helen Morris, Michelle Vieyra

Journal of the South Carolina Academy of Science

Many students assume that the more caffeine you drink, the better your cognitive performance. Over-consumption of caffeine has many negative effects, so if there are no dose related cognitive benefits to large amounts of caffeine, then college students should limit their intake. This study looked at whether ingesting a medium dose (200 mg) versus a lower dose (100 mg) of caffeine improved short term memory as measured by Flanker and n-back tests, compared to a control group. In addition, we looked at whether larger doses of caffeine produced a difference in neuronal activation during these tests as measured by functional …

Fourier Analysis Of Phase Resetting Curves Of Neural Oscillators, Robert A. Raidt, Sorinel A. Oprisan

Journal of the South Carolina Academy of Science

We investigated the impact of changes in biologically relevant control parameters, such as the shape of an external perturbation or the conductance values of an individual model neuron, on the shape of the phase resetting curve (PRC) of that neuron. For that purpose, PRCs were generated for groups of Morris-Lecar (ML) model neurons with different conductance values but similar firing periods (within 0.005ms) using external rectangular, triangular, or trapezoidal perturbations of varying areas. These PRCs were numerically described and analyzed as a series of coefficient values using a Fourier Discrete Sine Transform (DST). We found that changes in the shape …

U.S. Drought Monitor, December 17, 2013, Mark D. Svoboda

United States Agricultural Commodities in Drought Archive

Drought map of U.S. for December 17, 2013 (12/17/13) plus: U.S. crop areas experiencing drought (map), Approximate percentage of crop located in drought, by state (bar graph), Percent of crop area located in drought, past 52 weeks (line graph) for: Corn, Soybeans, Hay, Cattle, Winter wheat.

Base Excision Repair Of Oxidative Dna Damage Coupled With Removal Of A Cag Repeat Hairpin Attenuates Trinucleotide Repeat Expansion, Meng Xu, Yanhao Lai, Justin Torner, Yanbin Zhang, Zunzhen Zhang, Yuan Liu

Department of Chemistry and Biochemistry

Trinucleotide repeat (TNR) expansion is responsible for numerous human neurodegenerative diseases. However, the underlying mechanisms remain unclear. Recent studies have shown that DNA base excision repair (BER) can mediate TNR expansion and deletion by removing base lesions in different locations of a TNR tract, indicating that BER can promote or prevent TNR expansion in a damage location–dependent manner. In this study, we provide the first evidence that the repair of a DNA base lesion located in the loop region of a CAG repeat hairpin can remove the hairpin, attenuating repeat expansion. We found that an 8-oxoguanine located in the loop …

Soil Development And Vegetation Response To Removal Of A Small Dam, Lassen Volcanic National Park, California, Stephanie Kay Rohdy

Dissertations and Theses

Dam removal is increasing as dams age, yet little is understood about the pedogenic response to dam removal. This study reports on the edaphic changes of reservoir sediments and vegetation cover one year following removal of a small earthen dam in Northern California. In August 2012, I sampled surface sediments from the former Dream Lake reservoir in Lassen Volcanic National Park, and compared their physical and chemical properties with soil samples from two reference sites. I also estimated percent cover of vegetation in the former reservoir and reference sites. My results show that the reservoir was under reduced conditions, as …

Evaluation Of Striped Bass Stocks In Virginia, Monitoring And Tagging Studies, 2010-2014 Progress Report, 1 September 2012 - 31 August 2013, Philip W. Sadler, Matthew W. Smith, John M. Hoenig, Shelley E. Sullivan, Robert E. Harris, Lydia M. Goins

Reports

This report presents the results of striped bass (Morone saxatilis) tagging and monitoring activities in Virginia during the period 1 September 2012 through 31 August 2013. It includes an assessment of the biological characteristics of striped bass taken from the 2013 spring spawning run, estimates of annual survival and fishing mortality based on annual spring tagging, and the results of the study that documents the prevalence of mycobacterial infections of striped bass in Chesapeake Bay. The information contained in this report is required by the Atlantic States Marine Fisheries Commission and is used to implement a coordinated management plan for …

Synthesis, Characterization, And Application Of High Surface Area, Mesoporous, Stabilized Anatase Tio2 Catalyst Supports, Rebecca Elizabeth Olsen

Theses and Dissertations

Nanomaterials have attracted substantial attention in the area of catalysis due to the unique properties they exhibit such as high surface areas, intricate pore networks and unique morphologies. TiO2 has attracted attention as a catalyst since the discovery of its high photocatalytic activity by Fuishima and Honda in 1972. Given its high thermal stability, low cost, low environmental impact, and versatility, TiO2 is a widely used commercial catalyst and catalyst support. TiO2 is used in many applications such as photocatalysis is also an excellent support material for noble metals in a number of oxidative synthesis and pollution-control reactions. Though TiO2 …

Robinson Point, Belize: An Important Foraging Ground For Endangered Sea Turtles In The Western Caribbean Sea, Linda Searle

HCNSO Student Theses and Dissertations

Anecdotal reports, flipper tag returns, satellite migration paths, and above-water and net surveys have identified an important foraging area for sea turtles in the Robinson Point area, 12 kilometers southwest of Belize City. Visual observations confirmed that sea turtles were actively foraging at Robinson Point. Sixteen 30 minute visual observations from stationary and drifting boats made 132 sea turtle sightings from October 2007 through January 2008, with a maximum of 40 sightings made in one survey. In-water capture methodology tested the traditional turtle net, which captured 14 turtles in 63 sets for a success rate of only 22%. There were …

Nonlinear Spectroscopic Investigation Of Adsorption To C-18 Model Stationary Phase, Anthony D. Peterson

Theses and Dissertations

Reversed-phase liquid chromatography (RPLC) is a commonly used separation technique in chemistry. Nevertheless, the mechanistic interactions at the molecular level among the eluent, analyte, and the stationary phase are not fully understood. Because of this limited understanding, optimization of the separation must be done experimentally. Learning more about molecular interactions should aid in improving separations. We are currently using second-harmonic generation (SHG) spectroscopy to investigate how analytes adsorb to the surface. SHG is a spectroscopic technique that produces signal only at places of non-isotropic symmetry; this typically occurs at surfaces. SHG can be used to produce surface isotherms of test …

U.S. Drought Monitor, December 10, 2013, Michael J. Brewer

United States Agricultural Commodities in Drought Archive

Drought map of U.S. for December 10, 2013 (12/10/13) plus: U.S. crop areas experiencing drought (map), Approximate percentage of crop located in drought, by state (bar graph), Percent of crop area located in drought, past 52 weeks (line graph) for: Corn, Soybeans, Hay, Cattle, Winter wheat.

Environmental And Socio-Economic Considerations For Aquaculture In Jervis Bay, Nsw, Alyssa Joyce, Ana M. Rubio, Pia C. Winberg

Dr Pia C Winberg

No abstract provided.

Shifting Environmental Controls On Ch4 Fluxes In A Sub-Boreal Peatland, Thomas G. Pypker, P. A. Moore, John A. Hribljan, Rodney Chimner

Michigan Tech Publications

We monitored CO₂ and CH₄ fluxes using eddy covariance from 19 May to 27 September 2011 in a poor fen located in northern Michigan. The objectives of this paper are to: (1) quantify the flux of CH₄ from a sub-boreal peatland, and (2) determine which abiotic and biotic factors were the most correlated to the flux of CH₄ over the measurement period. Net daily CH₄ fluxes increased from 70 mg CH₄ m⁻² d⁻¹ to 220 mg CH₄ m⁻² d⁻¹ from mid May to mid July. After July, CH_{4 …}

U.S. Drought Monitor, December 3, 2013, Michael J. Brewer

United States Agricultural Commodities in Drought Archive

Drought map of U.S. for December 3, 2013 (12/3/13) plus: U.S. crop areas experiencing drought (map), Approximate percentage of crop located in drought, by state (bar graph), Percent of crop area located in drought, past 52 weeks (line graph) for: Corn, Soybeans, Hay, Cattle, Winter wheat.

Formation And Analysis Of Zinc Oxide Nanoparticles And Zinc Oxide Hexagonal Prisms And Optical Analysis Of Cadmium Selenide Nanoparticles, Jared M. Hancock

Theses and Dissertations

In this dissertation, methods to synthesize ZnO are reported. First, zinc oxide nanoparticles were synthesized with small amounts of transition metal ions to create materials called dilute magnetic semiconductors (DMS). We employed a low temperature sol-gel method that produces ZnO nanoparticles of reproducible size and incorporates cobalt, nickel, and manganese ions into the nanoparticles. Conditions were controlled such that a range of amounts of Co, Ni, and Mn were incorporated. The incorporation was tracked by color changes in the white ZnO powder to blue for Co, green for Ni and yellow for Mn. XRD measurements showed the nanoparticles were on …

Multi-Scale Computational Enzymology: Enhancing Our Understanding Of Enzymatic Catalysis, Rami Gherib, Hisham Mohammed Mohammed Dokainish, James Gauld

Chemistry and Biochemistry Publications

Elucidating the origin of enzymatic catalysis stands as one the great challenges of contemporary biochemistry and biophysics. The recent emergence of computational enzymology has enhanced our atomistic-level description of biocatalysis as well the kinetic and thermodynamic properties of their mechanisms. There exists a diversity of computational methods allowing the investigation of specific enzymatic properties. Small or large density functional theory models allow the comparison of a plethora of mechanistic reactive species and divergent catalytic pathways. Molecular docking can model different substrate conformations embedded within enzyme active sites and determine those with optimal binding affinities. Molecular dynamics simulations provide insights into …

A Population Model For Walleye In Nebraska Irrigation Reservoirs, Robert A. Kill

School of Natural Resources: Dissertations, Theses, and Student Research

Understanding how and why fish population size changes between years is a central theme in fisheries ecology. Fishery agencies have limited time and financial resources, thus there is a need for a quantitative way to direct the limited time and financial resources so agencies can manage fisheries more efficiently. I developed a tool for fishery managers that synthesizes common population indices and evaluated the relative importance of those indices given varying uncertainty in age-0 walleye Sander vitreus survival. Under most circumstances, I determined that resources are best utilized in reducing age-0 survival uncertainty when understanding walleye population growth. I applied …

Determining Scaphirhynchus Sturgeon Population Demographics And Dynamics: Implications For Range-Wide Management, Recovery, And Conservation, Martin J. Hamel

School of Natural Resources: Dissertations, Theses, and Student Research

Sturgeons (Acipenseridae) have experienced world-wide declines as a result of anthropogenic effects such as over-harvest, habitat degradation, altered flow regimes, and pollution. Nearly all European and Asian sturgeon species have experienced population declines and have subsequently been classified as either threatened or endangered. North American sturgeons have experienced a similar plight in that all eight native sturgeon species are listed as endangered, threatened, or of special concern. Direct linkages between North American sturgeon declines and anthropogenic effects are difficult to assess due to scale considerations, fluctuating environmental conditions, difficulty in capture, and the interaction of all these effects. To recover, …

Evaluation Of Three Nest Searching Methods For Ring-Necked Pheasant, Jeffery W. Stackhouse, Kevin K. Sedivec, Benjamin A. Geaumont

The Prairie Naturalist

Ring-necked pheasant (Phasianus colchicus) are a highly sought after game bird and as such, much research has been conducted regarding their ecology (Warner 1981, Trautman 1982, Johnson and Knue 1989). Perhaps the most investigated aspect of pheasant ecology is the species’ reproductive season (e.g. Linder et al. 1960, Dumke and Pils 1979, Leif 1994) with many studies focusing on nesting habitat (Baskett 1947, Clark et al. 1999). Results from previous research have acknowledged the difficulty associated with locating pheasant nests in their preferred cover types (Hanson 1970, Evrard 2000). Studies of pheasant nesting ecology have been based on …

Dual Capture Of A Piñon Deer Mouse And A Silky Pocket Mouse Resulting In Consumption Of The Smaller Animal, Jon C. Pigage, Roger D. Peyton

The Prairie Naturalist

Intraspecific dual captures of rodents are uncommon, but not rare. There are several reports of brown rats (Rattus norvegicus), white-footed deer mice (Peromyscus leucopus), North American deer mice (P. maniculatus), western harvest mice (Reithrodontomys megalotis) and meadow voles (Microtus pennsylvanicus) caught simultaneously in the same trap (i.e. a door-closing live-trap; Davis 1955, Getz 1961, Blaustein and Rothstein 1978, Jenkins and Llewellyn 1981, Novak 1983). Some reports are incidental whereas others are interpreted as social associations or bonding between conspecifics. Interspecific dual captures are rarely reported in the literature. The earliest report of …

Red-Tailed Hawk Nesting In Kansas: Influence Of Landscape Characteristics, William Langley

The Prairie Naturalist

Factors that affect nest site selection in red-tailed hawks (Buteo jamaicensis) include the physical features surrounding the nest and landscape characteristics. Features surrounding nests include: tree height, tree diameter (dbh), percent canopy cover, slope, nest openness, and density of woody plants or shrubs (Titus and Mosher 1981, Bechard et al. 1990, Tietje et al. 1997, Actkinson et al. 2007). Landscape characteristics that influence nest-site selection by red-tailed hawks vary across regions. In Georgia, red-tailed hawks selected nest site in areas with greater area of agriculture and open pasture (Moorman and Chapman 1996), whereas in Oklahoma prairies, the hawks …

Associations Between Iron Concentration And Productivity In Montane Streams Of The Black Hills, South Dakota, Cari-Ann Hayer, Benjamin M. Holocmb, Steven R. Chipps

The Prairie Naturalist

Iron is an important micronutrient found in aquatic systems that can influence nutrient availability (e.g. phosphorus) and primary productivity. In streams, high iron concentrations often are associated with low pH as a result of acid mine drainage, which is known to affect fish and invertebrate communities. Streams in the Black Hills of South Dakota are generally circumneutral in pH, yet select streams exhibit high iron concentrations associated with natural iron deposits. In this study, we examined relationships among iron concentration, periphyton biomass, macroinvertebrate abundance, and fish assemblages in four Black Hills streams. The stream with the highest iron concentration (~5 …

Use Of Seeded Exotic Grasslands By Wintering Birds, Andrew D. George, Timothy J. O'Connell, Karen R. Hickman, David M. Lesliee Jr.

The Prairie Naturalist

Despite widespread population declines of North American grassland birds, effects of anthropogenic disturbance on wintering habitat of this guild remain poorly understood. We compared avian abundance and habitat structure in fields planted to the exotic grass Old World bluestem (Bothriochloa ischaemum; OWB) to that in native mixed-grass prairie. During winters of 2007–2008 and 2008–2009, we conducted bird and vegetation surveys in six native grass and six OWB fields in Garfield, Grant, and Alfalfa counties, Oklahoma. We recorded 24 species of wintering birds in native fields and 14 species in OWB monocultures. While vegetation structure was similar between field …

How Important Is A Quality Manuscript Review?, Christopher N. Jacques

The Prairie Naturalist

Temperatures are finally starting to cool a bit (for those of us in the northern Great Plains region) and Thanksgiving break is just around the corner.

I offer my reflections in the spirit of encouraging each of you to take a break from your professional obligations and spend time with friends and family enjoying nature and everything it has to offer this fall.

Salamander Colonization Of Chase Lake, Stutsman County, North Dakota, David M. Mushet, Kyle I. Mclean, Craig A. Stockwell

The Prairie Naturalist

Salt concentrations in lakes are dynamic. In the western United States, water diversions have caused significant declines in lake levels resulting in increased salinity, placing many aquatic species at risk (Galat and Robinson 1983, Beutel et al. 2001). Severe droughts can have similar effects on salt concentrations and aquatic communities (Swanson et al. 2003). Conversely, large inputs of water can dilute salt concentrations and contribute to community shifts (Euliss et al. 2004).

Chase Lake is a large, shallow, alkaline lake in east-central North Dakota most famously known for supporting one of the largest breeding colonies of the American white pelican …

A Simple Device For Measuring The Minimum Current Velocity To Maintain Semi-Buoyant Fish Eggs In Suspension, Julias S. Mueller, Brandon D. Cheek, Qingman Chen, Jillian Groeschel, Shannok K. Brewer, Timothy B. Grabowski

The Prairie Naturalist

Pelagic broadcast spawning cyprinids are common to Great Plains rivers and streams. This reproductive guild produces non-adhesive semi-buoyant eggs that require sufficient current velocity to remain in suspension during development. Although studies have shown that there may be a minimum velocity needed to keep the eggs in suspension, this velocity has not been estimated directly nor has the influence of physicochemical factors on egg buoyancy been determined. We developed a simple, inexpensive flow chamber that allowed for evaluation of minimum current velocity needed to keep semi-buoyant eggs in suspension at any time frame during egg development. The device described here …

Common Core 4th Grade Environmental Science Lesson Plans For California Teachers, Gillian Schoenfeld

Natural Resources Management and Environmental Sciences

This project and its analyses were conducted to assist California fourth grade elementary school teachers in adjusting to teaching Common Core standards and science curriculum in their classrooms. The project included the creation of lesson plans, which could be utilized throughout the state of California.

As the Common Core standards, California’s Next Generation Science Standards for K- 12, were just proposed in June of 2013, these lesson plans would help teachers update their lessons and provide them materials and concepts of how to do so. These lessons provide higher-order thinking for students, which is the whole concept of the new …

Structure And Function Of Proteins Investigated By Crystallographic And Spectroscopic Time-Resolved Methods, Namrta Purwar

Theses and Dissertations

Biomolecules play an essential role in performing the necessary functions for life. The goal of this thesis is to contribute to an understanding of how biological systems work on the molecular level. We used two biological systems, beef liver catalase (BLC) and photoactive yellow protein (PYP). BLC is a metalloprotein that protects living cells from the harmful effects of reactive oxygen species by converting H2O2 into water and oxygen. By binding nitric oxide (NO) to the catalase, a complex was generated that mimics the Cat-H2O2 adduct, a crucial intermediate in the reaction promoted by the catalase. The Cat-NO complex is …