Life Sciences Commons^™

Depth-Variable Settlement Patterns And Predation Influence On Newly Settled Reef Fishes (Haemulon Spp., Haemulidae), Lance K. B. Jordan, Kenyon C. Lindeman, Richard E. Spieler

Marine & Environmental Sciences Faculty Articles

During early demersal ontogeny, many marine fishes display complex habitat-use patterns. Grunts of the speciose genus Haemulon are among the most abundant fishes on western North Atlantic coral reefs, with most species settling to shallow habitats (≤12 m). To gain understanding into cross-shelf distributional patterns exhibited by newly settled stages of grunts (<2 cm total length), we examined: 1) depth-specific distributions of congeners at settlement among sites at 8 m, 12 m, and 21 m, and 2) depth-variable predation pressure on newly settled individuals (species pooled). Of the six species identified from collections of newly settled specimens (n = 2125), Haemulon aurolineatum (tomtate), H. flavolineatum(French grunt), and H. striatum (striped grunt) comprised 98% of the total abundance; with the first two species present at all sites. Prevalence of H. aurolineatum and H. flavolineatumdecreased substantially from the 8-m site to the two deeper sites. In contrast, …

Global Trophic Position Comparison Of Two Dominant Mesopelagic Fish Families (Myctophidae, Stomiidae) Using Amino Acid Nitrogen Isotopic Analyses, C. Anela Choy, Peter C. Davison, Jeffrey C. Drazen, Adrian Flynn, Elizabeth J. Gier, Joel C. Hoffman, Jennifer P. Mcclain-Counts, Todd W. Miller, Brian N. Popp, Steve W. Ross, Tracey Sutton

Marine & Environmental Sciences Faculty Articles

The δ15N values of organisms are commonly used across diverse ecosystems to estimate trophic position and infer trophic connectivity. We undertook a novel cross-basin comparison of trophic position in two ecologically well-characterized and different groups of dominant mid-water fish consumers using amino acid nitrogen isotope compositions. We found that trophic positions estimated from the δ15N values of individual amino acids are nearly uniform within both families of these fishes across five global regions despite great variability in bulk tissue δ15N values. Regional differences in the δ15N values of phenylalanine confirmed that bulk tissue δ15N values reflect region-specific water mass biogeochemistry …

Air-Sea Interface In Hurricane Conditions, Alexander Soloviev, A. Fujimura, Silvia Matt

Marine & Environmental Sciences Faculty Articles

Improving hurricane prediction models requires better understanding of complex processes taking place at the air-sea interface at high wind speeds. The change of the air-sea interaction regime in hurricane conditions has been linked to the mechanism of direct disruption of the air-sea interface by pressure fluctuations working against the surface tension force. This can be achieved through the Kelvin-Helmholtz type instability. In order to investigate this mechanism, we have conducted a series of 3D numerical experiments using a volume of fluid multiphase model. The experiments were initialized with either a flat interface or short wavelets and wind stress applied at …

Development And Characterization Of 11 Novel Microsatellite Loci For The Roundscale Spearfish Tetrapturus Georgii And Their Cross-Species Amplification Among Other Istiophorid Species, Andrea M. Bernard, Kevin A. Feldheim, Mahmood S. Shivji

Marine & Environmental Sciences Faculty Articles

Eleven novel polymorphic microsatellite loci were developed and characterized for the recently validated roundscale spearfish Tetrapturus georgii. Characterization of these markers, based on 35 roundscale spearfish from the western North Atlantic, revealed two to 21 alleles per locus with an average expected heterozygosity (HE) of 0·09–0·94, and all loci conformed to Hardy–Weinberg expectations. Cross-amplification of these 11 loci against all other eight known istiophorid species indicates promising prospects for the utility of these markers for istiophorids in general.

Light And Vision In The Deep-Sea Benthos: I. Bioluminescence At 500-1000 M Depth In The Bahamian Islands, Sönke Johnsen, Tamara M. Frank, Steven H.D. Haddock, Edith A. Widder, Charles G. Messing

Marine & Environmental Sciences Faculty Articles

Bioluminescence is common and well studied in mesopelagic species. However, the extent of bioluminescence in benthic sites of similar depths is far less studied, although the relatively large eyes of benthic fish, crustaceans and cephalopods at bathyal depths suggest the presence of significant biogenic light. Using the Johnson-Sea-Link submersible, we collected numerous species of cnidarians, echinoderms, crustaceans, cephalopods and sponges, as well as one annelid from three sites in the northern Bahamas (500–1000 m depth). Using mechanical and chemical stimulation, we tested the collected species for light emission, and photographed and measured the spectra of the emitted light. In addition, …

Light And Vision In The Deep-Sea Benthos: Ii. Vision In Deep-Sea Crustaceans, Tamara M. Frank, Sönke Johnsen, Thomas W. Cronin

Marine & Environmental Sciences Faculty Articles

Using new collecting techniques with the Johnson-Sea-Link submersible, eight species of deep-sea benthic crustaceans were collected with intact visual systems. Their spectral sensitivities and temporal resolutions were determined shipboard using electroretinography. Useable spectral sensitivity data were obtained from seven species, and in the dark-adapted eyes, the spectral sensitivity peaks were in the blue region of the visible spectrum, ranging from 470 to 497 nm. Under blue chromatic adaptation, a secondary sensitivity peak in the UV portion of the spectrum appeared for two species of anomuran crabs:Eumunida picta (λ_max 363 nm) and Gastroptychus spinifer (λ_max 383 nm). Wavelength-specific …

Small-Scale Mapping Of Indeterminate Arborescent Acroporid Coral (Acropora Cervicornis) Patches, Brian K. Walker, E. A. Larson, Alison L. Moulding, David S. Gilliam

Marine & Environmental Sciences Faculty Articles

Western Atlantic populations of the staghorn coral Acropora cervicornis have drastically declined over the past few decades. Hence, interest in its ecology and spatial extent has increased. Acroporid corals with indeterminate arborescent growth like A.cervicornis primarily reproduce asexually by fragmentation, which can lead to extensive monotypic patches. Since fragmentation is a major component in indeterminate acroporid reproduction, these patches may expand or move over time. Periodic perimeter mapping facilitates comparison of patch areas to determine movement or expansion. A repeatable, low-cost method using a differential GPS carried by a snorkeler was employed to map the perimeter of A.cervicornis …

The Consumption Of Dha During Embryogenesis As An Indicative Of The Need To Supply Dha During Early Larval Development: A Review, Joana Figueiredo, Junda Lin, Justin Anto, Luis Narciso

Marine & Environmental Sciences Faculty Articles

The establishment of an adequate larval diet for crustacean and fish often involves a series of time-consuming and expensive trial and errors. Despite being nutritionally poor, rotifers and Artemia are the most commonly used preys in larviculture. Whether (and to what extent) the prey needs to be enriched with essential fatty acids differs from species to species. We hypothesized that the DHA content of a newly spawned eggs and its consumption through embryogenesis can be a good indicator of the need to enrich the prey with DHA. In order to assess this hypothesis, we performed a search in the scientific …

Circle Hooks In Commercial, Recreational, And Artisanal Fisheries: Research Status And Needs For Improved Conservation And Management, Joseph E. Serafy, Steven J. Cooke, Guillermo A. Diaz, John E. Graves, Martin Hall, Mahmood S. Shivji, Yonat Swimmer

Marine & Environmental Sciences Faculty Articles

The intent of convening the International Symposium on Circle Hooks in Research, Management, and Conservation was to yield a contemporary, science-based assessment of the management and conservation utility of circle hooks in commercial, recreational, and artisanal fisheries around the globe. The symposium objective was to provide a forum for individuals, organizations, and agencies to share relevant research results and perspectives. Based on the presentations, an examination of the literature, and the collective experience and knowledge of the authors, we provide a brief overview of the current status of circle hook research along with a list of research needs, with a …

Incorporating Circle Hooks Into Atlantic Pelagic Fisheries: Case Studies From The Commercial Tuna/Swordfish Longline And Recreational Billfish Fisheries, John E. Graves, Andrij Horodysky, David W. Kerstetter

Marine & Environmental Sciences Faculty Articles

An emerging body of literature has demonstrated the benefits of the use of circle hooks relative to standard J-hooks in commercial and recreational fisheries. In the pelagic longline fishery for tunas (Thunnus spp.) and swordfish (Xiphias gladius Linnaeus, 1758), the use of circle hooks has resulted in greater catch rates of some target species, lower catch rates of some bycatch species, and a higher percentage of many target and bycatch species alive at the time of haulback (gear retrieval). However, a lack of agreement among results of studies conducted in different fisheries and areas, using different baits and …

Catch Rates With Variable Strength Circle Hooks In The Hawaii-Based Tuna Longline Fishery, Keith A. Bigelow, David W. Kerstetter, Matthew G. Dancho, Jamie A. Marchetti

Marine & Environmental Sciences Faculty Articles

The Hawaii-based deep-set longline fleet targets bigeye tuna [Thunnus obesus (Lowe, 1839)] and infrequently takes false killer whales [FKW , Pseudorca crassidens (Owen, 1846)] as bycatch. From 2004 to 2008 with 20%–26% observer coverage, nine mortalities of and serious injuries to FKW were documented in the deep-set fishery in the Hawaii EE Z, yielding a mean take estimate of 7.3 animals yr⁻¹. Weak hook technology can utilize the size disparity between target and other species to promote the release of larger non-target species. Four vessels tested the catch efficacy and size selectivity of 15/0 “strong” circle hooks …

First Descriptions Of Endoparasite Fauna Of Elasmobranch And Mesopelagic Teleost Bycatch Fishes From The Western North Atlantic Pelagic Longline Fishery, Mae Taylor, Harold E. Laubach, David W. Kerstetter

Marine & Environmental Sciences Faculty Articles

Natural mortality is a poorly known aspect of fisheries biology, despite its importance in stock assessments and population analysis. Of potential sources of mortality and morbidity in fishes, the effect of internal parasites is perhaps the least studied even though these organisms are known to inhibit nutrient uptake and stimulate an inflammatory response in fish. Parasite taxa of the pelagic elasmobranchs silky and night sharks and pelagic stingray (Carcharhinus falciformis, C. signatus and Pteroplatytrygon violacea), and the mesopelagic teleosts sailfin lancetfish, oilfish, snake mackerel, escolar and Atlantic pomfret (Alepisaurus ferox, Ruvettus pretiosus, Gempylus serpens …

Human Impact On Atolls Leads To Coral Loss And Community Homogenisation: A Modeling Study, Bernhard Riegl, Charles R. C. Sheppard, Samuel J. Purkis

Marine & Environmental Sciences Faculty Articles

We explore impacts on pristine atolls subjected to anthropogenic near-field (human habitation) and far-field (climate and environmental change) pressure. Using literature data of human impacts on reefs, we parameterize forecast models to evaluate trajectories in coral cover under impact scenarios that primarily act via recruitment and increased mortality of larger corals. From surveys across the Chagos, we investigate the regeneration dynamics of coral populations distant from human habitation after natural disturbances. Using a size-based mathematical model based on a time-series of coral community and population data from 1999–2006, we provide hind- and forecast data for coral population dynamics within lagoons …

Open And Closed Seascapes: Where Does Habitat Patchiness Create Populations With High Fractions Of Self-Recruitment?, Malin L. Pinsky, Stephen R. Palumbi, Serge Andrefouet, Samuel J. Purkis

Marine & Environmental Sciences Faculty Articles

Which populations are replenished primarily by immigrants (open) and which by local production (closed) remains an important question for management with implications for response to exploitation, protection, and disturbance. However, we lack methods for predicting population openness. Here, we develop a model for openness and show that considering habitat isolation explains the existence of surprisingly closed populations in high-dispersal species, including many marine organisms. Relatively closed populations are expected when patch spacing is more than twice the standard deviation of a species' dispersal kernel. In addition, natural scales of habitat patchiness on coral reefs are sufficient to create both largely …

3d Sonar Measurements In Wakes Of Ships Of Opportunity, Alexander Soloviev, Christopher Maingot, Mike Agor, Lou Nash, Keith Dixon

Marine & Environmental Sciences Faculty Articles

The aim of this work is to test the potential capabilities of 3D sonar technology for studying small-scale processes in the near-surface layer of the ocean, using the centerline wake of ships of opportunity as the object of study. The first tests conducted in Tampa Bay, Florida, with the 3D sonar have demonstrated the ability of this technology to observe the shape of the centerlinewake in great detail starting from centimeter scale, using air bubbles as a proxy. An advantage of the 3Dsonar technology is that it allows quantitative estimates of the ship wake geometry, which presents new opportunities for …

Pyrosequencing Of Bacterial Symbionts Within Axinella Corrugata Sponges: Diversity And Seasonal Variability, James R. White, Jignasa Patel, Andrea Ottesen, Gabriela Arce, Patricia Blackwelder, Jose V. Lopez

Marine & Environmental Sciences Faculty Articles

Background: Marine sponge species are of significant interest to many scientific fields including marine ecology, conservation biology, genetics, host-microbe symbiosis and pharmacology. One of the most intriguing aspects of the sponge ‘‘holobiont’’ system is the unique physiology, interaction with microbes from the marine environment and the development of a complex commensal microbial community. However, intraspecific variability and temporal stability of sponge-associated bacterial symbionts remain relatively unknown.

Methodology/Principal Findings: We have characterized the bacterial symbiont community biodiversity of seven different individuals of the Caribbean reef sponge Axinella corrugata, from two different Florida reef locations during variable seasons using …

Red Sea Coral Reef Trajectories Over 2 Decades Suggest Increasing Community Homogenization And Decline In Coral Size, Bernhard Riegl, Andrew W. Bruckner, Gwilym Rowlands, Samuel J. Purkis, Philip Renaud

Marine & Environmental Sciences Faculty Articles

Three independent line intercept transect surveys on northern Red Sea reef slopes conducted in 1988/9 and 1997/8 in Egypt and from 2006–9 in Saudi Arabia were used to compare community patterns and coral size. Coral communities showed scale-dependent variability, highest at fine spatial and taxonomic scale (species-specific within and among reef patterns). At coarser scale (generic pattern across regions), patterns were more uniform (regionally consistent generic dominance on differently exposed reef slopes and at different depths). Neither fine- nor coarse-scale patterns aligned along the sampled 1700 km latitudinal gradient. Thus, a latitudinal gradient that had been described earlier from comparable …

A Streamlined Dna Tool For Global Identification Of Heavily Exploited Coastal Shark Species (Genus Rhizoprionodon), D. Pinhal, Mahmood S. Shivji, Pedro G. Nachtigall, Demian D. Chapman, Cesar Martins

Marine & Environmental Sciences Faculty Articles

Obtaining accurate species-specific landings data is an essential step toward achieving sustainable shark fisheries. Globally distributed sharpnose sharks (genus Rhizoprionodon) exhibit life-history characteristics (rapid growth, early maturity, annual reproduction) that suggests that they could be fished in a sustainable manner assuming an investment in monitoring, assessment and careful management. However, obtaining species-specific landings data for sharpnose sharks is problematic because they are morphologically very similar to one another. Moreover, sharpnose sharks may also be confused with other small sharks (either small species or juveniles of large species) once they are processed (i.e., the head and fins are removed). Here …

Invasionsoft: A Web-Enabled Tool For Invasive Species Colonization Predictions, Matthew W. Johnston, Samuel J. Purkis

Marine & Environmental Sciences Faculty Articles

Predicting and averting the spread of invasive species is a core focus of resource managers in all ecosystems. Patterns of invasion are difficult to forecast, compounded by a lack of user-friendly species distribution model (SDM) tools to help managers focus control efforts. This paper presents a web-based cellular automata hybrid modeling tool developed to study the invasion pattern of lionfish (Pterois volitans/miles) in the western Atlantic and is a natural extension our previous lionfish study. Our goal is to make publically available this hybrid SDM tool and demonstrate both a test case (P. volitans/miles) and a …

Coral Recruitment To Two Vessel Grounding Sites Off Southeast Florida, Usa, Alison L. Moulding, Vladimir N. Kosmynin, David S. Gilliam

Marine & Environmental Sciences Faculty Articles

Over the last two decades, more than 10 major vessel groundings have occurred on coral reefs offshore southeast Florida. Lack of any published information on coral settlement, post-settlement survival, and juvenile coral growth in the southeast Florida region inhibits efforts to determine if coral populations will be able to effectively re-establish themselves. The goal of this study was to examine these processes to obtain background data needed to determine the potential for natural recovery. Over a three year period annual coral recruitment, juvenile growth, and mortality rates were measured in 20 permanent quadrats at each of two ship grounding and …

Weak Prezygotic Isolating Mechanisms In Threatened Caribbean Acropora Corals, Nicole D. Fogarty, Steven V. Vollmer, Don R. Levitan

Marine & Environmental Sciences Faculty Articles

The Caribbean corals, Acropora palmata and A. cervicornis, recently have undergone drastic declines primarily as a result of disease. Previous molecular studies have demonstrated that these species form a hybrid (A. prolifera) that varies in abundance throughout the range of the parental distribution. There is variable unidirectional introgression across loci and sites of A. palmata genes flowing into A. cervicornis. Here we examine the efficacy of prezygotic reproductive isolating mechanisms within these corals including spawning times and choice and no-choice fertilization crosses. We show that these species have subtly different mean but overlapping spawning times, suggesting …

Spatial Analyses Of Benthic Habitats To Define Coral Reef Ecosystem Regions And Potential Biogeographic Boundaries Along A Latitudinal Gradient, Brian K. Walker

Marine & Environmental Sciences Faculty Articles

Marine organism diversity typically attenuates latitudinally from tropical to colder climate regimes. Since the distribution of many marine species relates to certain habitats and depth regimes, mapping data provide valuable information in the absence of detailed ecological data that can be used to identify and spatially quantify smaller scale (10 s km) coral reef ecosystem regions and potential physical biogeographic barriers. This study focused on the southeast Florida coast due to a recognized, but understudied, tropical to subtropical biogeographic gradient. GIS spatial analyses were conducted on recent, accurate, shallow-water (0–30 m) benthic habitat maps to identify and quantify specific regions …

Co-Cultures Of Pseudomonas Aeruginosa And Roseobacter Denitrificans Reveal Shifts In Gene Expression Levels Compared To Solo Cultures, Crystal A. Conway, Nwadiuto Esiobu, Jose V. Lopez

Marine & Environmental Sciences Faculty Articles

Consistent biosynthesis of desired secondary metabolites (SMs) from pure microbial cultures is often unreliable. In a proof-ofprinciple study to induce SM gene expression and production, we describe mixed “co-culturing” conditions and monitoring of messages via quantitative real-time PCR (qPCR). Gene expression of model bacterial strains (Pseudomonas aeruginosa PAO1 and Roseobacter denitrificans Och114) was analyzed in pure solo and mixed cocultures to infer the effects of interspecies interactions on gene expression in vitro, Two P. aeruginosa genes (PhzH coding for portions of the phenazine antibiotic pathway leading to pyocyanin (PCN) and the RhdA gene for thiosulfate: cyanide sulfurtransferase …

Gametogenesis And Spawning Of Solenastrea Bournoni And Stephanocoenia Intersepta In Southeast Florida, Usa, Jenna R. Lueg, Alison L. Moulding, Vladimir N. Kosmynin, David S. Gilliam

Marine & Environmental Sciences Faculty Articles

This study constitutes the first report of the gametogenic cycle of the scleractinian corals Solenastrea bournoni and Stephanocoenia intersepta. Tissue samples were collected near Ft. Lauderdale, Florida, USA between July 2008 and November 2009 and processed for histological examination in an effort to determine reproductive mode and potential spawning times. Both S. bournoni and S. intersepta are gonochoric, broadcast spawning species. Gametogenesis of S. bournoni began in April or May while S. intersepta had a much longer oogenic cycle that began in December with spermatogenesis beginning in July. Though spawning was not observed in situ, spawning was inferred …