Life Sciences Commons^™

Mosaic Analysis With Double Markers (Madm) As A Method To Map Cell Fates In Adult Mouse Taste Buds., Preston D. Moore

Electronic Theses and Dissertations

Taste buds are chemosensory endorgans embedded in the oral epithelium composed of cells that undergo continuous replacement. Mature taste cells live on average 10-14 days and are replaced by new cells when they die. However, the mechanism by which taste cells are produced and integrated into the taste bud as mature taste cells remains unknown. Previous studies approached this issue from either cell cycle gene expression properties or lineage tracing of precursor cells. In our study, we apply a new fate mapping technique that combines these two ideas. This technique, Mosaic Analysis with Double Markers, allows for simultaneous gene knockout …

Discovery And Characterization Of An Antibiotic From The Soil Bacterium Bacillus Sp., Thomas S. Barber

Electronic Theses and Dissertations

Many important antibiotics have become nearly obsolete due to the rise of antibiotic resistant pathogens. Rhodococcus, an actinomycete related to the prolific antibiotic producing genus Streptomyces, harbors over 30 genes for secondary metabolism that could be involved in antibiotic production. Several antibiotics have already been reported for Rhodococcus, suggesting the genus may be a good source for new inhibitory compounds. Fifty four soil bacteria were isolated using enrichment culture techniques (including 37 Rhodococcus) and screened for antibiotic producers. BTHX2, a species of Bacillus was found to have activity against Micrococcus luteus and Rhodococcus erythropolis. BTHX2 …

Modulation Of Alpha-Subunit Visit-Dg Sequence Residues Ser-347, Gly-351 And Thr-349 In The Catalytic Sites Of Escherichia Coli Atp Synthase., Laura Elaine Brudecki

Electronic Theses and Dissertations

Binding of inorganic phosphate (P_i) in ATP synthase catalytic sites is a crucial step for the synthesis of adenosine-5'-triphosphate (ATP). ATP is the fundamental means of cellular energy in almost every organism, and in order to gain insight into the regulation of ATP catalysis, critical amino acid residues responsible for binding P_i must be identified. Here, we investigate the role of highly conserved α-subunit VISIT-DG sequence residues αSer-347, αGly-351, and αThr-349 in P_i binding. Mutations αS347A/Q, αG351Q, αT349A/D/R, βR182A, and αT349R/βR182A were generated via site directed mutagenesis. Results from biochemical assays showed that αSer-347 is required …

Molecular Evidence Suggests Multiple Evolutionary Origins Of Sociality In The Polyphenic Spider Anelosimus Studiosus (Araneae: Theridiidae)., Nathaniel O. Weber

Electronic Theses and Dissertations

Anelosimus studiosus exhibits two behavioral phenotypes: subsocial and social. This is the only documented spider inhabiting a temperate climate exhibiting social behavior. While the subsocial phenotype is most common throughout the range, the social behavior occurs in isolated pockets in northern latitudes. This study examines the origins of the social phenotype within a segment of the spider's range. Two hypotheses are tested: 1) pockets of social behavior represent a single origin or 2) pockets of social behavior represent local evolutions, thus leading to multiple origins of evolution. Microsatellite loci were used to determine genetic structure of the population and to …

Lack Of Rhythmicity In The Honey Bee Queen: An Investigation Of Temporal Behavioral Patterns In Apis Mellifera Ligustica., Jennifer N. Johnson

Electronic Theses and Dissertations

Little is known about the behavioral patterns of honey bee queens. To determine if mated honey bee queens possess diel rhythmicity in behavior, we observed them in glass-sided observation hives using three types of observation regimes: focal studies consisting of 2-hour and 24-hour continuous observations as well as scan-sampling of multiple queens. All behaviors (active: walking, inspecting, egg-laying, begging for food, feeding, and grooming self; inactive: standing) occurred at all times of day and night, but no queen showed consistent diel rhythmicity in any of the individual behaviors. There were no consistent diel differences in active versus inactive behaviors or …

Neurochemical Levels Correlate With Population Level Differences In Social Structure And Individual Behavior In The Polyphenic Spider, Anelosimus Studiosus., Jennifer Bryson Price

Electronic Theses and Dissertations

Anelosimus studiosus is a socially polyphenic spider. Individuals can be classified as social/tolerant or solitary/aggressive. These behavioral differences are associated with considerable variation in social structure. Here, we begin to examine the physiological differences that may underlie the behavioral dimorphism in this species and possible implications for the evolution of sociality. Octopamine is a neurotransmitter that has been found to elevate aggression in invertebrates. Serotonin has been shown, in some cases, to interact antagonistically with octopamine. We used High Pressure Liquid Chromatography with Electrochemical Detection to quantify levels of these neurochemicals among adult females from social (multi-female) and solitary (single-female) …

Effect Of Stress On Mucin Expression In The Gastrointestinal Tract Of Mice., Bupe Martha Habiyambere

Electronic Theses and Dissertations

This study investigated the effects of chronic stress on mucin expression in the GIT of mice. Sixteen ICR male mice were randomly divided into treated and control animals. Restraint stress was applied to the treated group for 21 days. Body weight (BW) changes and feed consumed (FC) were regularly recorded. After 21 days mice were euthanized and blood, GIT mucosa, and GIT sections were collected. Serum corticosterone levels were determined. The GIT sections were fixed, paraffin embedded, sectioned, and stained with AB-PAS to visualize goblet cells. Mucin expression was determined using qPCR. As expected stressed mice showed higher corticosterone than …

Effects Of Short-Term, High-Force Resistance Training On High-Intensity Exercise Capacity., Patrick Abi Nader

Electronic Theses and Dissertations

The purpose of this study was to assess the effects of short-term high-intensity resistance training on time to exhaustion at maximal aerobic output. It was hypothesized that 2 weeks of training will induce improvements in performance at maximal aerobic output. Eighteen subjects participated in this study. Subjects were assigned to a control (n=8) or resistance training (n=10) groups. The resistance training group participated in 5 sessions of strength training over a period of 2 weeks on the leg press device. Both groups participated in pre and post intervention testing. After the intervention strength in the training group significantly increased (p=.00). …

Mechanical Processing Of European Green Crab (Carcinus Maenas), The Development Of A Value-Added Product And The Use Of Restructuring Additives To Increase The Functional Properties Of Green Crab Patties, Joseph A. Galetti

Electronic Theses and Dissertations

The European Green Crab (Carcinus maenas) has proven to be a successful invasive predator and has potential to be a valuable food source for human consumption. Due to the small size of green crab, hand picking commercial operations are not feasible. The objectives of this research were to develop uses for this undervalued resource by examining mechanical separation techniques of mince meat; developing a consumer acceptable mince meat product and exploring the functionality of green crab mince meat with additions of restructuring additives. The first part of this research was designed to determine how boil versus steam thermal processing, large …

A Characterization Of Maine Blueberry Growers In 2010, Anya Rose

Electronic Theses and Dissertations

A survey was sent to 343 lowbush blueberry growers in Maine with a response rate of 29%. Growers were asked questions about their management practices, pesticide use, priorities, decision-making influences, and beliefs about pesticide safety. Respondents categorized themselves into one of four categories: Integrated Pest Management (IPM), Conventional, Organic, and No-Spray. Analyses were conducted to examine factors that were linked to these four categories. A major goal of this study was to determine differences and similarities between growers of different management styles, and to define each category by the practices and beliefs of its members. Toxicity ratings were also calculated …

Role Of Eukaryotic Sel-1 Like Repeat Containing Genes In Helicobacter Pylori Evolution And Pathogenesis., Kalyani Putty

Electronic Theses and Dissertations

Background: Helicobacter pylori (Hp) establishes life-long gastric infection in billions of humans, and is often responsible for diseases such as peptic ulcer and gastric cancer. Cumulative actions of genetic drift and natural selection over several millennia sculpted the present Hp population structure, which is characterized by extreme genetic diversity and striking geographic clustering of genotypes. Natural selection is more commonly imprinted in DNA sequences of Hp proteins that interact with host components; however, in most instances biological relevance of selection during Hp infection remains unknown. Here, I attempted to elucidate the consequence of natural selection in two different contexts: (1) …

Role Of Sabp2 In Systemic Acquired Resistance Induced By Acibenzolar-S-Methyl In Plants., Diwaker Tripathi

Electronic Theses and Dissertations

Plants have evolved an efficient mechanism to defend themselves against pathogens. Many biotic and abiotic agents have been shown to induce defense mechanism in plants. Acibenzolar-S-Methyl (ASM) is a commercially available chemical inducer of local and systemic resistance (SAR) response in plants. ASM functioning at molecular level is mostly unclear. This research was designed to investigate the mechanism of ASM action in plants. It was hypothesized that SABP2, a plant protein, plays an important role in ASM-mediated defense signaling. Biochemical studies were performed to test the interaction between SABP2 and ASM. Transgenic SABP2-silenced tobacco plants were used to determine the …

Isolation Of A Siderophore Produced By Methicillin-Resistant Staphylococcus Aureus Strain H372., Rachel Elizabeth Presswood

Electronic Theses and Dissertations

Iron is necessary for many cellular processes such as the electron transport chain and gene regulation. However, most iron on earth is found in insoluble iron-hydroxide complexes. In addition, iron is tightly sequestered in the human body by proteins such as transferrin, making it unavailable for pathogens. In order to overcome these limitations bacteria have evolved siderophores. Siderophores are low molecular weight compounds that bind ferric iron with a high affinity. Staphylococcus aureus is an important human pathogen that is known to produce at least four siderophores, and these siderophores contribute to its virulence. S. aureus strain H372 was found …

Neuroprotective Effects Of Anthocyanins On Neuronal Death Induced By Inhibition Of Bcl-2 And Oxidative Stress, Natalie A. Kelsey

Electronic Theses and Dissertations

Neurodegenerative diseases such as Parkinson’s and amyotrophic lateral sclerosis have devastating consequences to the afflicted patients. A major cellular pathophysiology underlying these diseases is mitochondrial oxidative stress (MOS) leading to neuronal death. Here, we investigated the neuroprotective effects of a novel class of nutraceuticals, anthocyanins, against MOS-induced death in primary cultures of rat cerebellar granule neurons (CGNs). Anthocyanins are natural antioxidants whose neuroprotective potential has yet to be examined in detail. Kuromanin and callistephin are anthocyanins derived from black rice and strawberries, respectively. Glutathione (GSH)-sensitive MOS and intrinsic apoptosis were induced in CGNs by the Bcl-2 inhibitor, HA14-1. Callistephin and …

Overexpression Of Amyloid Precursor Protein Induces Mitochondrial Oxidative Stress And Activates The Intrinsic Apoptosis Pathway, Matthew G. Bartley

Electronic Theses and Dissertations

Down syndrome (DS) is the most common genetic form of cognitive disability and is caused by trisomy of chromosome 21. Within chromosome 21 is the gene, amyloid precursor protein (APP). Proteolysis of APP into toxic and aggregate-prone, beta-amyloid fragments underlies the pathophysiology of Alzheimer's disease (AD). Individuals with DS develop the neuropathology that can be diagnosed as AD; however, the role of APP overexpression in this comorbidity is presently unclear. Here, we elucidated the mechanism of cell death induced by overexpression of wild type APP. Chinese hamster ovary cells transfected with a DsRed-APP fusion construct displayed caspase-3 activation and nuclear …

Patterns Of Regeneration Of Eastern White Pine (Pinus Strobus L.) As Influenced By Large Isolated Reserve Trees And Precommercial Thinning, Kate E. Zellers

Electronic Theses and Dissertations

The spruce budworm epidemic of the 1970s and 1980s led to the salvage harvesting of spruce-fir stands, serving as a release for scattered immature eastern white pine (Pinus strobus L.) trees. These pines are now growing as large isolated reserve trees above a mixed conifer regeneration stratum. The objectives in this study were to determine any effect of varying levels of basal area (m² ha^-1) of large pine reserve trees may have on (1) the densities (stems ha^-1) of both eastern white pine and non-pine species in the developing regeneration stratum, and (2) the …

Natural Selection And Its Interactions With Migration And Population Demography: Experiments In Wild Guppy Populations, Dylan Jones Weese

Electronic Theses and Dissertations

In this dissertation I quantify spatial and temporal variation in the pattern and strength of natural selection in wild populations of Trinidadian guppies (Poecilia reticulata), and assess the demographic costs of ongoing contemporary evolution in the form of selection against migrants. First, I describe the results often mark-recapture experiments to test hypotheses concerning the role of natural selection in geographic patterns of trait variation. Previous work has reported that guppies inhabiting high- and low-predation sites differ in both body shape and color. These patterns of phenotypic variation have been theorized to reflect differences in the balance between functional trade-offs among …

The Growth, Yield, And Financial Performance Of Isolated Eastern White Pine (Pinus Strobus L.) Reserve Trees, Christopher E. Zellers

Electronic Theses and Dissertations

The ability of eastern white pine (Pinus strobus L.) to persist as emergent trees makes this species well suited to silvicultural systems in which they are retained as isolated reserves after a regeneration harvest. While such systems are implemented throughout the Acadian spruce-fir region of Maine, little is known about the growth response and financial performance of eastern white pine following complete release from competition. In this study, 77 trees from 8 sites throughout the Acadian spruce-fir region were sampled tree and crown measurements, and increment cores were extracted at breast height, as well as from the top of …

Analysis Of Optical Spikes Reveals Dynamics Of Aggregates In The Twilight Zone, Nathan Briggs

Electronic Theses and Dissertations

The "biological pump," whereby phytoplankton grow in the surface ocean, aggregate, and sink, is a critical process contributing to global atmospheric CO2 drawdown and provides the vast majority of food for deep ocean and benthic ecosystems. The strength of this pump hinges on the amount of material that stick together to form larger aggregates, the sinking rates of these aggregates, and the rate at which they are consumed as they sink. However, marine aggregates, also called "marine snow," are often fragile and notoriously difficult to sample, their sinking rates are highly variable and difficult to quantify, and their concentrations can …

Greening The Green Revolution: Moving Beyond Chemicals To Sustainable Agricultural Practices, Elizabeth G. Crawley

Electronic Theses and Dissertations

Agriculture has dominated the economy of many developing countries for centuries, which has led to development policies that center on agricultural development. An obvious approach to improved production is to decrease agricultural losses in the fields and increase efficiency to markets. This study focuses on the developmental role of pesticides and chemical fertilizers on non-traditional agricultural export farming and the adoption of IPM techniques. With farmers in the Comayagua Valley of Honduras, an Asian vegetable production center for the country, as the study population, the costs and benefits of planting oriental vegetables was examined. Statistical analysis was used to examine …

Resistance Training Increases The Expression Of Ampk, Mtor, And Glut4 In Previously Sedentary Subjects And Subjects With The Metabolic Syndrome., Andrew Steven Layne

Electronic Theses and Dissertations

Exercise has been considered a cornerstone of diabetes prevention and treatment for decades, but the benefits of resistance training are less clear. Nineteen non-diabetic subjects (10 metabolic syndrome, 9 sedentary controls) underwent 8 weeks of supervised resistance training. After training, strength and V̇ O_2max increased by 10% in both groups. Percent body fat decreased in subjects with the metabolic syndrome. Additionally, lean body mass increased in both groups (p<0.05). Expression of glucose transporter protein-4 (GLUT4), the principle insulin-responsive glucose transporter, increased significantly in both groups. 5-adenosine monophosphateactivated protein kinase (AMPK) and mammalian target of rapamycin (mTOR) expression increased in both groups, indicating increased protein synthesis and mitochondrial biogenesis. Markers of insulin resistance measured by a euglycemic hyperinsulinemic clamp did not improve in subjects with the metabolic syndrome but increased significantly in control subjects (13%). Resistance training upregulates intracellular signaling pathways that may be beneficial for ameliorating the metabolic syndrome.

Error Correcting Codes And The Human Genome., Suzanne Mclean Lyle

Electronic Theses and Dissertations

In this work, we study error correcting codes and generalize the concepts with a view toward a novel application in the study of DNA sequences. The author investigates the possibility that an error correcting linear code could be included in the human genome through application and research. The author finds that while it is an accepted hypothesis that it is reasonable that some kind of error correcting code is used in DNA, no one has actually been able to identify one. The author uses the application to illustrate how the subject of coding theory can provide a teaching enrichment activity …

Isolation And Identification Of The Siderophore "Vicibactin" Produced By Rhizobium Leguminosarum Atcc 14479., William H. Wright Iv

Electronic Theses and Dissertations

Siderophores are small, iron chelating molecules produced by many bacteria to help meet the iron requirements of the cell. Multiple metabolic functions require iron as it serves as a cofactor in many enzymes and cellular processes. However, in the presence of oxygen and at physiologic pH, iron forms insoluble ferric complexes that cause the nutrient to be unavailable to bacterial cells. Siderophores alleviate this limitation by chelating the ferric iron, rendering it soluble and available for uptake. One group of microorganisms known for their ability to produce siderophores is the rhizobia. These bacteria are characterized both by their formation of …

Characteristics Of Nectar Production And Standing Crop In Campsis Radicans (Bignoniaceae)., Andrea Alexis Edge

Electronic Theses and Dissertations

We examined several aspects of nectar production in Campsis radicans to better understand how standing crop is affected and how production affects pollinator visitation. In all experiments, nectar and concentration of flowers were measured and total sugar was calculated. Flowers do not produce additional nectar unless nectar is removed, and it is not resorbed. Volume of standing crop and total sugar fluctuates throughout the day, whereas concentration remains constant. Age and time of day significantly affect regeneration of nectar and sugar. The number of removals did not significantly affect the amount of nectar or sugar regenerated; however, concentration declined significantly …

A Family-Based Association Study Of Conduct Disorder., Xueqiu Jian

Electronic Theses and Dissertations

Conduct disorder (CD) is a psychiatric syndrome in childhood and adolescence that is one of the most common childhood disorders with continuously increasing prevalence but uncertain pathogenesis. We performed a genome-wide, family-based association study of CD using P2BAT/FBAT software. The data is gathered from Collaborative Study on the Genetics of Alcoholism (COGA) and International Multi-Center ADHD Genetics Project (IMAGE).

Using COGA data, we identified 20 markers which showed suggestive associations (p<10^-3) with CD. Nine of them are located in known genes. Two genes, ADAM10 and CAMK2A, which had been reported associated with Alzheimer's disease (AD), bipolar disorder, …

Inhibition Of Escherichia Coli Atp Synthase By Polyphenols And Their Derivatives., Prasanna Keerthi Dadi

Electronic Theses and Dissertations

We have studied the inhibitory effect of natural and structurally modified polyphenols on Escherichia coli ATP synthase to test (I) if the beneficial dietary effects of polyphenols are related to their inhibitory actions on ATP synthase, (II) if inhibitory effects of polyphenolic compound could be augmented through structural modifications, and (III) if they can act as antimicrobial agent through their actions on ATP synthesis. X-ray crystal structures of polyphenol binding sites suggested that polyphenols bind at a distinct polyphenol binding pocket, at the interface of α,β,γ-subunits. We found that both natural and modified polyphenols inhibit E. coli ATP synthase to …

Comparative Morphometrics Of The Sacral Vertebra In Aneides (Caudata: Plethodontidae)., Lisa Nicole Schaaf

Electronic Theses and Dissertations

The genus Aneides (Caudata: Plethodontidae) is an arboreal salamander with a prehensile tail and a distribution that spans North America. It is hypothesized that adaptations for arboreality will be visible in the osteology of the sacral vertebra either by qualitative analysis or linear and morphometric analysis in comparison with other plethodontid salamanders. This study demonstrates that while qualitative and quantitative analyses are successful at making genus-level distinctions between taxa, identification to lower taxonomic levels remains inconclusive. Linear morphometrics and dorsal Procrustes landmarks were the most successful metrics to identify known taxa. Two unidentified fossil salamander sacral vertebrae from Oregon Caves …

Hermit Thrush (Catharus Guttatus) And Veery (C. Fuscescens) Breeding Habitat Associations In Southern Appalachian High-Elevation Forests., Andrew J. Laughlin

Electronic Theses and Dissertations

The Hermit Thrush is a new breeding bird in the Southern Appalachian high-elevation mountains, having expanded its range southward over the last few decades. Here it is sympatric with the Veery, a congeneric breeding resident. In order to more fully understand why the range expansion took place and to understand more about the local ecology of the newly arrived bird, I measured several habitat variables in 30 Hermit Thrush and 24 Veery territories. Principal Components Analysis and Cluster Analysis brought to light several patterns of habitat preferences for these 2 species. Hermit Thrushes prefer territories with more leaf litter on …

Assessing The Biological Condition Of Maine Streams And Rivers Using Benthic Algal Communities, Thomas John Danielson

Electronic Theses and Dissertations

The purpose of this study was to test and develop algal methods of evaluating the condition of Maine streams and rivers. The primary objective was to develop a statistical model to predict attainment of Maine's aquatic life criteria for water quality classes A, B, and C. I collected 298 samples of algae on rocks from 193 locations across the state. The major pattern in species composition related to conversion of forests to urban, residential, and agricultural land uses. I calculated preferred environmental conditions of 236 algal taxa for 1) concentrations of nitrogen, phosphorus, and dissolved ions in the water, 2) …

Physiological And Evolutionary Implications Of The Pattern Of Expression Of Oxygen-Binding Hemoproteins In Antarctic Notothenioid Fishes, Kimberly Borley

Electronic Theses and Dissertations

Antarctic icefish do not express hemoglobin (Hb). Icefishes possess cardiovascular modifications including increased densities of blood vessels, larger ventricles and increased blood volume compared to red-blooded relatives. In addition to delivering oxygen to tissues, Hb degrades nitric oxide (NO), a small signaling molecule. To investigate the mechanism driving development of icefish cardiovascular characteristics, I present and test the hypothesis that loss of Hb results in increased steady-state levels of NO, triggering downstream signaling pathways such as angiogenesis. I measured NO breakdown products, as a proxy for NO, and found that icefish have higher steady-state levels of NO metabolites in their …