Life Sciences Commons^™

Characterization Of Lignin Structural Variability And The Associated Application In Genome Wide Association Studies, Nathan D. Bryant

Doctoral Dissertations

Poplar (Populus sp.) is a promising biofuel feedstock due to advantageous features such as fast growth, the ability to grow on marginal land, and relatively low lignin content. However, there is tremendous variability associated with the composition of biomass. Understanding this variability, especially in lignin, is crucial to developing and implementing financially viable, integrated biorefineries. Although lignin is typically described as being comprised of three primary monolignols (syringyl, guaiacyl, p-hydroxyphenyl), it is a highly irregular biopolymer that can incorporate non-canonical monolignols. It is also connected by a variety of interunit linkages, adding to its complexity. Secondary cell wall …

Impact Of Cover Crop Species Diversity On Soil Nutrient Availability And Crop Productivity, Amanda Kramer

Masters Theses

Cover crops provide multiple environmental benefits that improve both soil and water quality; however, farmers only utilize them on approximately 5% of harvested U.S. cropland. Low adoption rates are attributed to yield impact concerns, seed and planting costs, and lack of advocacy. This study, which began in October 2019, assessed the effects of nitrogen rate and cover crop diversity on weed biomass, soil coverage, in-situ residue decomposition, soil nitrogen and phosphorus availability, and cash crop yield to better understand the costs and benefits of cover crop adoption at two locations in Tennessee (Milan and Spring Hill). Treatments were replicated 4 …

Winter Wheat Cover Crop Increased Subsoil Organic Carbon In A Long-Term Cotton Cropping System In Tennessee, Rounak Patra, Debasish Saha, Sindhu Jagdamma

Biosystems Engineering and Soil Science Publications and Other Works

Long-term cover-cropping and no-tillage practices can facilitate soil organic carbon (SOC) accumulation in agroecosystems for soil health and climate mitigation benefits. However, the contribution of these conservation management practices to SOC gain from the subsoil layers is not been extensively studied. To understand this knowledge gap, it is essential to determine the distribution of total SOC and SOC fractions in response to management practices across the soil profile. Therefore, this study was conducted by leveraging a 40-year replicated field experiment in a continuous cotton (Gossypium hirsutum) system. The management treatments examined included three cover crop treatments: 1) hairy vetch, HV …

Corn (Zea Mays L.) Production In Living Mulch Systems, Grazing Potential, And Economic Viability, Marcia Peireira Quinby

Doctoral Dissertations

Living mulch (LM) is a practice in which forages are grown simultaneously with the main crop, serving as a living cover throughout the growing season. The LM systems were developed to alleviate concerns of soil depletion and finding ways to reduce tillage negative effects on soil productivity. In addition, when legumes are use can decrease the reliance on N fertilizer. The use of corn in LM have been previously studied due to the crop being a large commodity in the U.S.; In addition, the ability to graze the LM after corn production can increase the land use efficiency. To determine …

Native Soil Virus Abundance, Composition, And Mobility Under Natural And Managed Agricultural Conditions, Regan Mcdearis

Doctoral Dissertations

Soil viruses are ubiquitous in the environment and important for their influence on host community composition and function. Viral infection influences host evolution, metabolism, function, diversity, community evenness, and more. As host bacteria play critical roles in agricultural systems, including nutrient cycling and soil aggregate formation, the influence which soil viruses have on their hosts makes them key players in these systems. However, many important questions remain regarding virus abundance and distribution under human imposed and natural conditions in agricultural systems. Understanding how these conditions impact virus abundance, transport, and community structure is critical for a broader understanding of soil …

Identifying Drought Tolerance Traits In Tennessee Soybean Genotypes: Recovery From Severe Water Deficit Stress, Samuel W. Purdom

Masters Theses

Ninety-four percent of U.S. grown soybeans are produced under rainfed conditions with intermittent droughts occurring late in the season during reproductive growth stages. Due to the temporary nature of drought, the ability of a crop to survive and recover effectively from water deficit stress is important for ensuring yield stability. In 2019 and 2020, two greenhouse experiments and two field studies were conducted to screen eleven soybean genotypes for transpiration response and recovery from water deficit stress and high vapor pressure deficit (VPD). In the first greenhouse study, soybean plants were grown in pots sealed to prevent evaporation and plants …

Soil Health Assessment For The Agroecosystems Of West Tennessee, Surendra Singh

Doctoral Dissertations

Soil health assessment is important for making informed sustainable management decisions in production systems. An established standardized method to quantify soil health is lacking and the validity of the existing methods across agroecoregions and cropping systems is not yet proven. Therefore, this study aims to evaluate the feasibility of widely discussed three soil health tests - Haney’s Soil Health Test (HSHT), Comprehensive Assessment of Soil Health (CASH), and Alabama Soil Health Index (ASHI) to assess soil health in diverse cropping systems of Tennessee. Since these approaches were originally developed for specific agroecoregions, we hypothesized that these tests are not sensitive …

Soil Moisture Sensitivity Of Microbial Processing Of Soil Organic Carbon, Shikha Singh

Doctoral Dissertations

Soil organic carbon (SOC) is the largest terrestrial C pool and understanding SOC decomposition in response to environmental factors is critical for accurate predictions of climatic change. Soil moisture is one of the most important, yet less explored, environmental factors controlling soil microbial respiration. The relationship between soil moisture and respiration also varies with soil texture. Currently, it is difficult to predict feedbacks to climatic changes from changes in soil moisture, as most earth system models lack site-specific, experimentally-derived parameters to represent soil moisture-texture-respiration relationships. The overarching goals of this dissertation are to gain a fundamental understanding of the interactive …

Labor Use And Labor Challenges Faced By Small Fruit And Vegetable Farms: The Case Of Tennessee, Justin L. Cross

Haslam Scholars Projects

United States (U.S.) fruit and vegetable farms depend heavily on labor for the production of the crops they grow and sell. In recent years, it has become increasingly difficult for farms to obtain the labor they need to produce their crops. Therefore, labor management strategies have become critical in determining the profitability and long-term sustainability of farms specializing in the production of fruits and vegetables. These strategies are even more significant for smaller farms that face resource constraints that inhibit their use of alternative labor sources (e.g., migrant workers) or their ability to reduce their reliance on labor through mechanization. …

Impact Of Ultrasonication On Physicochemical Properties And Digestibility Of Sorghum Starch, Zhihong Wang

EURēCA: Exhibition of Undergraduate Research and Creative Achievement

Sorghum, a highly nutritious grain, is usually not considered as a main staple in many families because it is not as easy to be digested as other grains such as rice or maize. But recent studies of ultrasonication shed a light on potential utilization of this world’s fifth important cereal other than being raw material source of biofuel or liquor. This experiment was meant to compare the differences between unsonicated and sonicated sorghum starch in terms of their physical chemical properties and digestion ability. Despite their similarities in shapes under microscopes and their thermal properties, but sonicated sorghum starch was …

The Use Of Potato (Solanum Tuberosum) Suspension Cells For Rapid Screening Of Chloroplast Transformation Vectors, Lindsey Shover

EURēCA: Exhibition of Undergraduate Research and Creative Achievement

Chloroplast genetic engineering is unique in that it allows for high levels of gene expression while providing a means of natural bio-confinement. Although the chloroplast genome sequence of over 800 plant species is known, the elements that naturally regulate chloroplast gene expression are poorly understood. Recently, our lab has developed a 264 part modular cloning kit that contains known chloroplast regulatory elements. This kit can be used for the construction of novel chloroplast transformation cassettes; however, functional testing of these cassettes is currently hindered by standard chloroplast transformation technologies. Therefore, the aim of this experiment was to develop a rapid …

Protein, Methionine, And Cysteine Upregulation In Phaseolus Vulgaris ‘Black Turtle Bean’ Seeds Through Sulfur Fertilization At V2 And R2 Stages Of Growth, Hannah Paige Barry

Masters Theses

The purpose of this research was to increase protein, methionine, and cysteine content in Phaseolus vulgaris L., common bean in relation to the inhibitory compound tannin. Previous research has shown that sulfur fertilization increases total protein, methionine and cysteine content in various crops, but always in tandem with inhibitory compound increases. If successful, the resulting bean seed will have a better nutrient profile for malnourished populations around the world.

Granular gypsum was applied at 0 kg S ha^-1 [kilograms of sulfur per hectare], 10 kg S ha^-1, 20 kg S ha^-1, 40 kg S ha …

Switchgrass Extractives Have Potential As A Value-Added Antimicrobial Against Plant Pathogens And Foodborne Pathogens, Alexander Ian Bruce

Masters Theses

Panicum virgatum (switchgrass), a perennial grass native to North America, is a leading biomass feedstock candidate for the manufacture of cellulosic ethanol. Switchgrass is considered a viable option for biofuel production due to its cheap production cost and ability to grow on marginal land. Biofuel derived from switchgrass has been shown to be very energy efficient, producing 540% more renewable energy versus nonrenewable energy expended. Switchgrass-derived biofuel is also estimated to have greenhouse gas emissions that are 94% lower than emissions from gasoline (Schmer et al 2008). Biofuels are created through biochemical processes that utilize various enzymes and microorganisms for …

Rapid Molecular Detection And Population Genetics Of Pityophthorus Juglandis, A Vector Of Thousand Cankers Disease In Juglans Spp., Emel Oren

Masters Theses

Thousand Cankers Disease (TCD) is a disease complex involving the fungal pathogen Geosmithia morbida, an insect vector Pityophthorus juglandis, and the hosts, Juglans spp. and Pterocarya spp. Signs and symptoms of TCD include crown thinning due to branch dieback, yellowing and wilting of the leaves, appearance of epicormic shoots, numerous entrance/exit holes, gallery formation by P. juglandis, and the development of small, dark brown cankers underneath the bark. TCD originally described from western U.S., has now expanded to eastern U.S. and northwestern Italy. The disease complex is often difficult to diagnose due to the absence of symptoms …

Contrasting Soil Management Practice, Nitrogen Source, And Harvest Method Effects On Corn Production In Ohio And Tennessee, Casey Theresa Sullivan

Masters Theses

Current global agricultural production is completed with little regards to sustainable soil use. It is clear that the research and use of sustainable management practices must be expanded in order to preserve this natural resource. The objectives of this research were to focus on improving soil fertility and resource use efficiency by 1) evaluating farm management practices to find those that conserve soil and improve yields, 2) looking at alternative methods of fertilizing through the reuse of waste materials in agriculture. The last objective was to 3) test a more efficient method data collection and research production, resulting in more …

Impacts Of Biofumigation And Anaerobic Soil Disinfestation On Strawberry Production, Jennifer Renee’ Wheeler

Masters Theses

Due to the phase-out of methyl bromide, there is a need for alternative, nonchemical fumigation treatments in strawberry production. Anaerobic soil disinfestation and biofumigation are two non-chemical methods for controlling soilborne plant pathogens of strawberry. This study was designed to observe strawberry fruit nutrition and soil volatiles of a strawberry field being treated with biofumigation treatments, anaerobic soil disinfestation treatments, and a combination of the two alternative methods. A trial was conducted with 11 pre-plant soil-incorporated treatments arranged in a randomized complete block design with 6 rows (blocks). Biofumigation treatments consisted of deactivated mustard meal, deoiled mustard meal, mustard pellets, …

Long-Term Impacts Of Conservation Management Practices On Soil Carbon Storage, Stability, And Utilization Under Cotton Production In West Tennessee, Candace Brooke Wilson

Masters Theses

Biogeochemical cycling of soil carbon (C) is heavily influenced by conservation agricultural (CA) practices. This study examined SOC stability under three CA practices: reduced nitrogen (N) fertilizer application rate, cover cropping, and zero-tillage implemented for 31 years. Respiration rates measured from a 602-day incubation period were fitted to a double-pool first order exponential model of SOC decomposition. The active [respired] SOC pool showed distinct differences between applications of reduced (34N kg ha^-1 [-1]) and high fertilization rates (101N kg ha^-1) combined with tillage, and suggest that high fertilizer applications with conventional tillage allocated more C into a …

Potential Interaction Between Pre- And Post-Emergence Herbicides And The Efficacy Of Insecticide And Fungicide Seed Treatments In Cotton, Cory Joseph Vineyard

Masters Theses

An apparent reduction in the performance of neonicotinoid seed treatments in controlling thrips, especially in cotton, has been observed, which has coincided with the increased use of both pre- and post-emergence herbicides to control glyphosate-resistant weeds. The objective of this research was to evaluate the potential interactions of both pre- and post-emergence herbicides on the efficacy of insecticide and fungicide seed treatments in cotton

Aldicarb along with imidacloprid and thiamethoxam seed treatments reduced thrips numbers compared with non-treated seed. However, thiamethoxam did not provide effective control. Some pre-emergence herbicide treatments reduced plant health. While there was evidence that thrips injury …

Economic And Environmental Optimization In The Supply Of Switchgrass In Tennessee, Jia Zhong

Masters Theses

The low efficiency of collection, storage and transportation in the switchgrass supply chain has hindered the commercialization of a switchgrass-based biofuel industry, even given its ecological and environmental advantages in carbon sequestrate, soil quality, water use, and pollution pressure. Thus, designing a switchgrass-based supply chain balancing both environmental and economic performance is important to expedite the development of the cellulosic biofuel industry to meet the national energy plan.

The objectives of this study are to 1) determine economic cost and multiple environmental outcomes in feedstock supply chains and 2) identify the relation between the economic and environmental performances. The first …

Cassava (Manihot Esculenta Crantz) Tuber Quality As Measured By Starch And Cyanide (Hcn) Affected By Nitrogen, Phosphorus, And Potassium Fertilizer Rates, Ivan Bernardo Cuvaca, Neal Eash, Svetlana Zivanovic, Dayton Mcgregor Lambert, Forbes R. Walker, B. Rustrick

Biosystems Engineering and Soil Science Publications and Other Works

Cassava (Manihot esculenta Crantz) is an important subsistence crop for many poor rural families in Africa. Cassava contains cyanogenic glucosides (linamarin and lotaustralin) which liberate hydrogen cyanide (HCN) during tuber processing. Once liberated, HCN attaches to the processed tuber. Continuous consumption of processed tuber containing high HCN concentration coupled with low protein intake causes Konzo – a paralyzing disorder that impacts children and women of childbearing age. There are ways to reduce HCN concentration during tuber processing; however, this can also reduce the overall starch content in the cassava tuber. A study comprising twenty treatments consisting of different combinations of …

Enhancing The Sustainability Of Integrated Biofuel Feedstock Production Systems, Amanda Joy Ashworth

Doctoral Dissertations

As use of second-generation biofuel crops increases, so do questions about sustainability, particularly their potential to affect fossil energy consumption and greenhouse gas emissions. Nitrogen (N)-fixing legumes interseeded into switchgrass (Panicum virgatum L.) may be an alternative to inorganic fertilizer in forage-feedstock systems. Research herein is divided into four general experiments: I). N replacement and feedstock impacts from legume intercrops and biochar in switchgrass; II). N-fixation rates in intercrop systems; III). impacts of biofuel systems under enhanced climate change; and, IV). projected sustainability of regional switchgrass production. Approaches included: characterization of feedstock/forage quality traits based on legume, biochar and …

Reaping The Benefits Of Conservation Tillage: Implications Of Increased Soil Organic Matter And Aggregation In Surface Soils, Kenna Elizabeth Rewcastle

Chancellor’s Honors Program Projects

No abstract provided.

Development And Evaluation Of A Cost Effective Plant Growth Media Moisture Sensor And Development Of An Aqueous Data Transmission System For Irrigation Purposes, Steven Michael Pickett

Masters Theses

The ability to accurately monitor and transit the moisture content of soilless growing media in the rooting zone is critical for plant-based research, production of high value crops, and other agricultural production. The focus of this study is the development and evaluation of a cost effective moisture sensor designed to measure the plant-available moisture content of growing media and the development of a aqueous data transmission method for relaying this information back to a central location. While there are currently many commercially available soil moisture sensors on the market, the aim of this research is not to develop a more …

A Short-Term Assessment Of Carbon Dioxide Fluxes Under Contrasting Agricultural And Soil Management Practices In Zimbabwe, Deb O'Dell, Thomas J. Sauer, Bruce B. Hicks, Christian Thierfelder, Dayton M. Lambert, Joanne Logan, Neal S. Eash

Biosystems Engineering and Soil Science Publications and Other Works

Two of the biggest problems facing humankind are feeding an exponentially growing human population and preventing the accumulation of atmospheric greenhouse gases and its climate change consequences. Refined agricultural practices could address both of these problems. The research addressed here is an exploration of the efficacy of alternative agricultural practices in sequestering carbon (C). The study was conducted in Zimbabwe with the intent to (a) demonstrate the utility of micrometeorological methods for measuring carbon dioxide (CO2) exchange between the surface and the atmosphere in the short-term, and (b) to quantify differences in such exchange rates for a variety of agricultural …

Conservation Agriculture And Household Wellbeing: A Non-Causal Comparison Among Smallholder Farmers In Mozambique, W. E. Mcnair, Dayton Mcgregor Lambert, Neal S. Eash

Biosystems Engineering and Soil Science Publications and Other Works

This research examines the relationship between household wellbeing and the use of conservation agriculture (CA) by smallholder farmers in Mozambique. Wellbeing indicators are regressed on household demographic attributes, farm management practices, and a variable indicating farmer adoption of CA. Findings suggest that households using CA have higher wellbeing index scores related to farm tool and implement ownership and housing material quality, but lower index scores related to livestock ownership. The findings present an encouraging, baseline picture of the association between the use of CA technologies by farmers in Mozambique and household wellbeing.

Aminocyclopyrachlor Efficacy For Non-Cropland Weed Control, José Javier Vargas Almodóvar

Masters Theses

The production of chemicals for crop protection purposes evolved after World War II with the commercialization of the auxin herbicides 2,4-D and MCPA. Their utility and effectiveness created an interest for North American and European companies to develop and research thousands of agrochemicals available today.

Recently discovered and introduced to the market by DuPont Crop Protection, aminocyclopyrachlor is the first broad spectrum synthetic auxin herbicide in this chemical class, and is structurally similar to the auxin herbicides: aminopyralid, clopyralid and picloram. Aminocyclopyrachlor has activity on broadleaf weed species with limited activity on monocot species. Aminocyclopyrachlor is absorbed via plant roots …

Synchronization Of Developmental Processes And Defense Signaling By Growth Regulating Transcription Factors, Jinyi Liu, John Hollis Rice, Nana Chen, Thomas J. Baum, Tarek Hewezi

Plant Sciences Publications and Other Works

Growth regulating factors (GRFs) are a conserved class of transcription factor in seed plants. GRFs are involved in various aspects of tissue differentiation and organ development. The implication of GRFs in biotic stress response has also been recently reported, suggesting a role of these transcription factors in coordinating the interaction between developmental processes and defense dynamics. However, the molecular mechanisms by which GRFs mediate the overlaps between defense signaling and developmental pathways are elusive. Here, we report large scale identification of putative target candidates of Arabidopsis GRF1 and GRF3 by comparing mRNA profiles of the grf1/grf2/grf3 triple mutant and those …

Influence Of Aba On Calcium Binding In Tomato Fruit And Its Impact On Fruit Texture, Kendall Cressman

Chancellor’s Honors Program Projects

No abstract provided.

Effects Of Organically Enhanced Biofertilizer And Fertilizer Briquettes On Mineral Nutrition, Quality, And Yield Of Corn And Soil Health, John Heggie Winings

Masters Theses

Interest in alternate fertilizers has increased in recent years in order to improve crop nutrition and soil health. The efficacy of these fertilizers on corn (Zea mays L.) production and quality has been scarcely documented. Two alternative fertilizers, organically enhanced NPSFe Unity biofertilizer (Unity) manufactured from sterilized organic additives extracted from municipal wastewater biosolids and NPKZn briquettes (briquettes) produced by compacting solid fertilizers into a super-granule between 1-3 grams, were evaluated for nutrient concentrations, growth, quality, and yield of corn, residual soil nutrient levels, and soil microbial community structure relative to the conventional fertilizers ammonium sulfate and urea at …

Effects Of Leaflet Orientation And Root Morphology On Physiological Traits And Yield In Soybeans., Richard Dewayne Johnson

Doctoral Dissertations

Drought is the most important abiotic stress adversely affecting soybean (Glycine max (L.) Merr.) yield. Leaflet orientation has been shown to reduce leaflet temperatures and transpiration while root morphology has been related to slower wilting phenotypes. The objective of this study was to investigate effects of leaflet orientation and rooting morphology on whole plant transpiration, yield, water use efficiency, and other physiological traits in soybeans using grafting techniques, population lines, near-isogenic lines, and restrained leaf canopy experiments. Experiments were conducted in Knoxville, TN with additional yield trial plots at Springfield, Spring Hill, and Milan, TN. Data were collected on …