Life Sciences Commons^™

Assessment Of Genetic Diversity And Population Structure Of U.S. Polypay Sheep From Breed Origins To Future Genomic Selection, Carrie S. Wilson, Jessica Lynn Petersen, Luiz F. Brito, Brad A. Freking, Sara M. Nilson, J. Bret Taylor, Thomas W. Murphy, Ronald M. Lewis

Department of Animal Science: Faculty Publications

Knowledge of past and present genetic diversity within a breed is critical for the design and optimization of breeding programs as well as the development of strategies for the conservation of genetic resources. The Polypay sheep breed was developed at the U.S. Sheep Experiment Station (USSES) in 1968 with the goal of improving productivity in Western U.S. range flocks. It has since flourished in the more intensively managed production systems throughout the U.S. The genetic diversity of the breed has yet to be documented. Therefore, the primary objective of this study was to perform a comprehensive evaluation of the genetic …

Low Similarity Between Parasite Communities Of Ten Sympatric Carangid Species, Juan M. Osuna-Cabanillas, Emigdio Marín-Enríquez, Ana P. Martínez-Falc´On, Juan T. Timi, Francisco N. Morales-Serna

Harold W. Manter Laboratory: Library Materials

Host phylogeny and ecological convergence are two factors thought to influence the structure of parasite communities. The aims of this study were to determine the diversity of metazoan parasites of 10 sympatric fish species of the family Carangidae from the southeastern Gulf of California, and to analyze their similarity at infracommunity and component community levels, in order to determine if the host species, particularly those congeneric with similar ecological characteristics, exhibit similar assemblages of parasites. In total, 874 fish specimens were examined and 40 parasite species were identified. The component community was composed by 21 parasite species in Caranx caninus …

Intensification Differentially Affects The Delivery Of Multiple Ecosystem Services In Subtropical And Temperate Grasslands, Shishir Paudel, Nuria Gomez-Casanovas, Elizabeth H. Boughton, Samuel D. Chamberlain, Pradeep Wagle, Brekke L. Peterson, Rajen Bajgain, Patrick J. Starks, Jefferey Basara, Carl J. Bernacchi, Evan H. Delucia, Laura E. Goodman, Prasanna H. Gowda, Ryan Reuter, Jed P. Sparks, Hilary M. Swain, Xiangming Xiao, Jean L. Steiner

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Intensification, the process of intensifying land management to enhance agricultural goods, results in “intensive” pastures that are planted with productive grasses and fertilized. These intensive pastures provide essential ecosystem services, including forage production for livestock. Understanding the synergies and tradeoffs of pasture intensification on the delivery of services across climatic regions is crucial to shape policies and incentives for better management of natural resources. Here, we investigated how grassland intensification affects key components of provisioning (forage productivity and quality), supporting (plant diversity) and regulating services (CO2 and CH4 fluxes) by comparing these services between intensive versus extensive pastures in subtropical …

Establishment Of Wildflower Islands To Enhance Roadside Health, Ecological Value, And Aesthetics Phase Ii, Jackson Ebbers, Heidi L. Hillhouse, John A. Guretsky, Thomas J. Weissling

Nebraska Department of Transportation: Research Reports

No abstract provided.

Intraguild Predation Is Increased In Areas Of Low Prey Diversity In A Generalist Predator Community, Stella F. Uiterwaal, Amber J. Squires, Bennett A. Grappone, Brian Dillard, Ariadne Castaneda, Sora L. Kim, John P. Delong

School of Biological Sciences: Faculty Publications

1. Niche differentiation and intraguild predation (IGP) can allow ecologically similar species to coexist, although it is unclear which coexistence mechanism predominates in consumer communities. Until now, a limited ability to quantify diets from metabarcoding data has precluded the use of sequencing data to determine the relative importance of these mechanisms.

2. Here, we pair a recent metabarcoding quantification approach with stable isotope analysis to examine diet composition in a wolf spider community.

3. We compare the prevalence of resource partitioning and IGP in these spiders and test whether factors that influence foraging performance, including individual identity, morphology, prey community and environmental conditions, …

   ---

   Go to article

Intercontinental Comparisons Of Subterranean Host-Parasite Communities Using Bipartite Network Analyses, Altangerel T. Dursahinhan, Sebastian Botero-Cañola, Scott Gardner

Scott L. Gardner Publications

Rodents living in a subterranean ecotope face a unique combination of evolutionary and ecological pressures and while host species evolution may be driven by the selective pressure from the parasites they harbour, the parasites may be responding to the selective pressures of the host. Here we obtained all available subterranean rodent host-parasite records from the literature and integrated these data by utilizing a bipartite network analysis to determine multiple critical parameters to quantify and measure the structure and interactions of the organisms present in host-parasite communities. A total of 163 species of subterranean rodent hosts, 174 parasite species, and 282 …

Intraguild Predation Is Increased In Areas Of Low Prey Diversity In A Generalist Predator Community, Stella F Uiterwaal, Amber Squires, Bennett Grappone, Brian Dillard, Ariadne Castaneda, Sora L. Kim, John Delong

School of Biological Sciences: Faculty Publications

1. Niche differentiation and intraguild predation (IGP) can allow ecologically similar species to coexist, although it is unclear which coexistence mechanism predominates in consumer communities. Until now, a limited ability to quantify diets from metabarcoding data has precluded the use of sequencing data to determine the relative importance of these mechanisms.

2. Here, we pair a recent metabarcoding quantification approach with stable isotope analysis to examine diet composition in a wolf spider community.

3. We compare the prevalence of resource partitioning and IGP in these spiders and test whether factors that influence foraging performance, including individual identity, morphology, prey community …

Global Distribution And Richness Of Armillaria And Related Species Inferred From Public Databases And Amplicon Sequencing Datasets, Rachel A. Koch, Joshua Herr

Department of Plant Pathology: Faculty Publications

Armillaria is a globally distributed fungal genus most notably composed of economically important plant pathogens that are found predominantly in forest and agronomic systems. The genus sensulato has more recently received attention for its role in woody plant decomposition and in mycorrhizal symbiosis with specific plants. Previous phylogenetic analyses suggest that around 50 species are recognized globally. Despite this previous work, no studies have analyzed the global species richness and distribution of the genus using data derived from fungal community sequencing datasets or barcoding initiatives. To assess the global diversity and species richness of Armillaria, we mined publicly available sequencing …

Mist-Netting Of Forest-Dwelling Bats In The Lazovsky State Nature Reserve, Russian Far East, Kerstin Birlenbach

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

Many bat species depend on a high value of healthy and undisturbed forests with a high ratio of roost sites in old tree stands. This investigation focused on the diversity, distribution and reproduction status of bats within the area of Lazovsky State Nature Reserve. The importance of an area for bats can be measured by the ratio of reproduction. The most important and sensitive time in a bats yearly circle is the time of hibernation in winter and the reproduction time of females. From the beginning of July to the end of August 2007, in total 139 bats of eight …

Caddisflies (Trichoptera) Of The Buffalo National River, Arkansas, David E. Bowles, Cameron Cheri, Faron D. Usrey, Jeffrey M. Williams

Insecta Mundi

We report 106 species of caddisflies (Trichoptera) representing 44 genera and 16 families that were collected across 50 sampling sites in the Buffalo River watershed. The species collected represent about 45% of the known Interior Highlands caddisfly fauna. The most speciose families collected were the Hydroptilidae (30), Leptoceridae (21), and Hydropsychidae (17). Two species found during this study, Paduniella nearctica and Ochrotrichia contorta, are listed as species of special concern in the state of Arkansas due to their relative rarity. Similarity analysis values among collection sites ranged from 9% to 77%. Seriation analysis of caddisfly genera and species showed …

Microbiota Accessible Carbohydrates And Susceptibility To Clostridioides Difficile Infection, Keegan Schuchart, Jennifer Auchtung, Thomas Auchtung

UCARE Research Products

This experiment looked into the effects of dietary microbiota accessible carbohydrates (MACs)on the composition of human GI microbe colonies and their susceptibility to pathogen infection. Three different concentrations of MAC ingrained media were tested in mini bioreactor arrays, treated with antibiotics, infected with Clostridioides difficile, then allowed to recover. Microbe community was examined for strain composition and diversity before and after the antibiotic treatment and Clostridioides difficile infection. After the initial mini bioreactor run, individual isolates were investigated in their ability to respond to specific MACs Arabinoglactina, Inulin, and Soluble starch at experimental concentrations.

Rhizosphere Microbiome Of Arid Land Medicinal Plants And Extra Cellular Enzymes Contribute To Their Abundance, Abdul Latif Khan, Sajjad Asaf, Raeid M. M. Abed, Yen Ning Chai, Ahmed N. Al-Rawahi, Tupan Kumar Mohanta, Ahmed Al-Rawahi, Daniel P. Schachtman, Ahmed Al-Harrasi

Department of Agronomy and Horticulture: Faculty Publications

Revealing the unexplored rhizosphere microbiome of plants in arid environments can help in understanding their interactions between microbial communities and plants during harsh growth conditions. Here, we report the first investigation of rhizospheric fungal and bacterial communities of Adenium obesum, Aloe dhufarensis and Cleome austroarabica using next-generation sequencing approaches. A. obesum and A. dhufarensis grows in dry tropical and C. austroarabica in arid conditions of Arabian Peninsula. The results indicated the presence of 121 fungal and 3662 bacterial operational taxonomic units (OTUs) whilst microbial diversity was significantly high in the rhizosphere of A. obesum and A. dhufarensis and low …

Effects Of Wild Pig Disturbance On Forest Vegetation And Soils, Steven M. Gray, Gary J. Roloff, Daniel B. Kramer, Dwayne R. Etter, Kurt C. Vercauteren, Robert A. Montgomery

United States Department of Agriculture Wildlife Services: Staff Publications

In North America, wild pigs (Sus scrofa; feral pigs, feral swine, wild boars) are a widespread exotic species capable of creating large‐scale biotic and abiotic landscape perturbations. Quantification of wild pig environmental effects has been particularly problematic in northern climates, where they occur only recently as localized populations at low densities. Between 2016 and 2017, we assessed short‐term (within ~2 yrs of disturbance) effects of a low‐density wild pig population on forest features in the central Lower Peninsula of Michigan, USA. We identified 16 8‐ha sites using global positioning system locations from 7 radio‐collared wild pigs for sampling.Within each …

Genome-Wide Variation In Potyviruses, Deepti Nigam, Katherine Latourrette, Pedro F.N. Souza, Hernan Garcia Ruiz

Nebraska Center for Virology: Faculty Publications

Potyviruses (family Potyviridae, genus Potyvirus) are the result of an initial radiation event that occurred 6,600 years ago. The genus currently consists of 167 species that infect monocots or dicots, including domesticated and wild plants. Potyviruses are transmitted in a non-persistent way by more than 200 species of aphids. As indicated by their wide host range, worldwide distribution, and diversity of their vectors, potyviruses have an outstanding capacity to adapt to new hosts and environments. However, factors that confer adaptability are poorly understood. Viral RNA-dependent RNA polymerases introduce nucleotide substitutions that generate genetic diversity. We hypothesized that selection imposed by …

Data Of Soil, Vegetation And Bird Species Found On Double-Crested Cormorant Colonies In The Southeastern United States, Leah Moran Veum, Brian S. Dorr, Katie Hanson-Dorr, R. J. Moore, Scott A. Rush

United States Department of Agriculture Wildlife Services: Staff Publications

This data article provides the methods and procedures followed to collect and analyse soil, vegetation and bird data on three different treatment islands in Guntersville Reservoir, Alabama. Samples were collected from randomly selected plot points from islands that were placed into three different treatment types: Colony (currently occupied by Double-crested Cormorants) (Phalacrocorax auritus; n 1⁄4 5), Historic (historically occupied by cormorants and currently abandoned; n 1⁄4 3) and Reference (never occupied by cormorants; n 1⁄4 4). We compared vegetation and tree metrics such as structure and diversity, as well as soil chemistry and bird diversity and communities among islands within …

Double-Crested Cormorant Colony Effects On Soil Chemistry, Vegetation Structure And Avian Diversity, Leah Moran Veum, Brian S. Dorr, Katie C. Hanson-Dorr, R.J. Moore, Scott A. Rush

United States Department of Agriculture Wildlife Services: Staff Publications

Effects of Double-crested Cormorants (Phalacrocorax auritus) on vegetation, soil chemistry and tree health have been documented from their breeding colonies in the northern breeding grounds of Canada and the United States (U.S.) but not for areas within the southeastern United States where breeding activity is relatively novel. We compared vegetation and tree metrics such as structure diversity, and soil chemistry among colony islands, uninhabited islands, and abandoned colony islands within Guntersville Reservoir, a temperate forest ecosystem. Avian diversity and community structure were also quantified on these islands. Concentrations of potassium (K), phosphorus (P) and nitrate (NO3 −) in soil were …

Spatial And Temporal Distribution Of The Forensically Significant Blow Flies Of Los Angeles County, California, United States (Diptera: Calliphoridae), Royce T. Cumming

School of Natural Resources: Dissertations, Theses, and Student Research

Forensic entomology although not a commonly used discipline in the forensic sciences, does have its niche and when used by investigators is respected in crinimolegal investigations (Greenberg and Kunich, 2005). With many species of forensically significant insects being regionally specific, it is often difficult for forensic entomologists to as confidently translate regionally specific studies across drastically differing geographic regions (Brundage, et al., 2011).

The purpose of this study is to help create a better temporal and geographic distributional understanding of the blow fly species present in Los Angeles County, California, United States. Twenty-five locations from four ecoregions (coastal mountains, urban, …

Composition And Host-Use Patterns Of A Scarab Beetle (Coleoptera: Scarabaeidae) Community Inhabiting The Canopy Of A Lowland Tropical Rainforest In Southern Venezuela, Susan Kirmse, Brett C. Ratcliffe

Department of Entomology: Faculty Publications

The adult scarab beetle fauna of the canopy in a lowland tropical rainforest in southern Venezuela was observed and collected by means of a 42 m-tall tower crane for a complete year. This first census of an entire Amazonian canopy scarab community was embedded within the interdisciplinary research project "Towards an understanding of the structure and function of a Neotropical rainforest ecosystem with special reference to its canopy" organized by the Austrian Academy of Science. The Scarabaeidae represented one of the most species-rich beetle families in the canopy of the crane plot and were therefore selected for a detailed analysis …

Cylindera (Conidera) Mindoroana Sp. N. (Coleoptera: Cicindelidae), A New Tiger Beetle Species From The Philippines, Herbert Zettel, Jürgen Wiesner

Insecta Mundi

Conidera Rivalier, 1961 is a well-defined subgenus of tiger beetles (Coleoptera: Cicindelidae) hitherto only known from two species endemic to the island of Luzon. This paper describes the first species from Mindoro, with a doubtful record from Mindanao. Cylindera (Conidera) mindoroana Zettel and Wiesner, new species, differs strongly by an unusual shape of the female’s elytra. A diagnosis for Conidera and a key to the species of this subgenus is presented.

Increased Productivity In Wet Years Drives A Decline In Ecosystem Stability With Nitrogen Additions In Arid Grasslands, Junfeng Wang, Johannes M.H. Knops, Chad E. Brassil, Chunsheng Mu

School of Biological Sciences: Faculty Publications

Adding nutrients to nutrient-limited ecosystems typically lowers plant diversity and decreases species asynchrony. Both, in turn, decrease the stability of productivity in the response to negative climate fluctuations such as droughts. However, most classic studies examining stability have been done in relatively wet grasslands dominated by perennial grasses. We examined how nutrient additions influence the stability of productivity to rainfall variability in an arid grassland with a mix of perennial and annual species. Of the nutrients, only nitrogen increased productivity, and only in wet years. In addition, only nitrogen decreased the stability of productivity. Thus, nutrient addition makes ecosystem productivity …

Cover Crop Mixture Diversity And Function, Angela Florence

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

The objective of this study was to evaluate the effect of cover crop mixture diversity on cover crop function. Specifically, this study evaluated the effect of cover crop species and functional richness on aboveground biomass productivity, weed suppression, soil nutrient retention, soil microbial community characteristics, and performance stability. Twenty to forty cover crop treatments were replicated three to four times at eleven sites across southeastern Nebraska using a pool of eighteen species representing three cover crop species each from six pre-defined functional groups: cool-season grasses, cool-season legumes, cool-season brassicas, warm-season grasses, warm-season legumes, and warm-season broadleaves. Each species was planted …

How Nebraska’S Eastern Saline Wetland Native Plant Species Grow In Response To Restoration Methods: Application Of Different Salinity Level Groundwater, Ellen Dolph, Keunyea Song, Amy Burgin, Trenton E. Franz

UCARE Research Products

Nebraska’s Eastern Saline Wetlands are unique ecosystems endemic to the Salt and Rock Creek waters in Lancaster and Saunders County.

They provide an ecosystem services as well as habitat for endangered species such as the state endangered saltwort (Salicornia rubra) and federally endangered Salt Creek tiger beetle (Cicindela nevadica lincolniana).

Over 80 % of the saline wetlands are highly degraded and in recent years, the Saline Wetland Conservation Partnership has formed to conserve and restore the remaining saline wetland fragments, but there is limited information about inland saline wetland restoration. Purpose: Investigate techniques to better conserve …

Discovery And Delimitation: Criconematid Nematodes Of North American Grasslands, Magdalena Jean Olson

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Approximately 200 years ago, North American landscapes were dominated by vast expanses of grassland. The Great Plains, an ecologically complex and diverse ecoregion, extended from Canada to the Gulf of Mexico, and from the Rocky Mountains to the border of the eastern hardwood forest in Indiana. Now the original tallgrass prairie exists in small widely dispersed remnant patches surrounded by agroecosystems. This study is an effort to characterize soil nematode diversity and population structure within those remnant patches. The plant parasitic nematode family Criconematidae serves as our indicator for nematode diversity, due to its global distribution, high abundance in natural …

Scarification And Gap Size Have Interacting Effects On Northern Temperate Seedling Establishment, John L. Willis, Michael B. Walters, Kurt W. Gottschallk

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

After decades focused on promoting economically valuable species, management of northern temperate forests has increasingly become focused on promoting tree species diversity. Unfortunately, many formerly common species that could contribute to diversity including yellow birch (Betula alleghaniensis Britton.), paper birch (Betula papyrifera Marsh), eastern hemlock (Tsuga canadensis L.), and eastern white pine (Pinus strobus L.) are now uncommon in the seedling layer, raising concerns about our ability to use these species to increase diversity. In this study, two related seed addition experiments conducted in 45 variably-sized harvest gaps (unharvested to 6500 m^2) in adjacent mesic northern hardwood stands, Emmet County, …

Distribution And Diversity Of Ant Genera From Selected Ecoregions Across Nebraska, Jessica Jurzenski, Marc Albrecht, W. Wyatt Hoback

The Prairie Naturalist

We documented distribution and diversity of ant genera in four of the six-level III ecoregions across Nebraska. We sampled ants using bait cards, pitfall traps, and by opportunistic sampling, including direct collection and in carrion-baited pitfall traps. We identified 22 genera from five subfamilies, which were further classified into six functional groups. In common with other Great Plains states, Formica Linnaeus and Lasius Fabricius occurred most frequently in our samples, and overall ant genus-level richness was comparable to surrounding states. We compared genera similarity using Jaccard’s similarity index within and between the High Plains (western-most) and Western Corn Belt Plains …

Distribution And Diversity Of Ant Genera From Selected Ecoregions Across Nebraska, Jessica Jurzenski, Marc Albrect, W. Wyatt Hoback

Department of Entomology: Faculty Publications

We documented distribution and diversity of ant genera in four of the six level III ecoregions across Nebraska. We sampled ants using bait cards, pitfall traps, and by opportunistic sampling, including direct collection and in carrion-baited pitfall traps. We identified 22 genera from five subfamilies, which were further classified into six functional groups. In common with other Great Plains states, Formica Linnaeus and Lasius Fabricius occurred most frequently in our samples, and overall ant genus-level richness was comparable to surrounding states. We compared genera similarity using Jaccard’s similarity index within and between the High Plains (western-most) and Western Corn Belt …

Genetic Mapping Of Quantitative Trait Loci Associated With Bioenergy Traits, And The Assessment Of Genetic Variability In Sweet Sorghum (Sorghum Bicolor (L.). Moench), Aatshwaelwe Lekgari Lekgari

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Sweet sorghum, a botanical variety of sorghum is a potential source of bioenergy because high sugar levels accumulate in its stalks. The objectives of this study were to explore the global diversity of sweet sorghum germplasm, and map the genomic regions that are associated with bioenergy traits. In assessing diversity, 142 sweet sorghum accessions were evaluated with three marker types (SSR, SRAP, and morphological markers) to determine the degree of relatedness among the accessions. The traits measured (anthesis date [AD], plant height [PH], biomass yield [BY], and moisture content [MC]) were all significantly different (P<0.05) among accessions. Morphological marker clustered the accessions into five groups based on PH, MC and AD. The three traits accounted for 92.5% of the variation. There were four and five groups based on SRAP and SSR data respectively classifying accessions mainly on their origin or breeding history. The observed difference between SSR and SRAP based clusters could be attributed to the difference in marker type. SSRs amplify any region of the genome whereas SRAP amplify the open reading frames and promoter regions. Comparing the three marker-type clusters, the markers complimented each other in grouping accessions and would be valuable in assisting breeders to select appropriate lines for crossing. In evaluating QTLs that are associated with bioenergy traits, 165 recombinant inbred lines (RILs) were planted at four environments in Nebraska. A genetic linkage map constructed spanned a length of 1541.3 cM, and generated 18 linkage groups that aligned to the 10 sorghum chromosomes. Fourteen QTLs (6 for brix, 3 for BY, 2 each for AD and MC, and 1 for PH) were mapped. QTLs for the traits that were significantly correlated, colocalized in two clusters on linkage group Sbi01b. Both parents contributed beneficial alleles for most of traits measured, supporting the transgressive segregation in this population. Additional work is needed on exploiting the usefulness of chromosome 1 in breeding sorghum for bioenergy.

Integrating Spatial And Temporal Approaches To Understanding Species Richness, Ethan P. White, S. K. Morgan Ernest, Peter B. Adler, Allen H. Hurlbert, S. Kathleen Lyons

School of Biological Sciences: Faculty Publications

Understanding species richness patterns represents one of the most fundamental problems in ecology. Most research in this area has focused on spatial gradients of species richness, with a smaller area of emphasis dedicated to understanding the temporal dynamics of richness. However, few attempts have been made to understand the linkages between the spatial and temporal patterns related to richness. Here, we argue that spatial and temporal richness patterns and the processes that drive them are inherently linked, and that our understanding of richness will be substantially improved by considering them simultaneously. The species–time–area relationship provides a case in point: successful …

Beetle Species Diversity In The Lesser Antilles Islands: How Many Species Are Really There?, Stewart B. Peck

Insecta Mundi

Recent extensive and intensive field work by the team of M. A. Ivie on the Lesser Antillean island of Montserrat suggests that a mean of 827 beetle species may be expected on that island. This datum makes possible the generation of hypotheses of the probable beetle species diversity on other islands of the Lesser Antilles as a function of the areas of the islands. Figures are given for the presently known, estimated total, and estimated number of unknown species for each principal island. This predicts that many hundreds (if not thousands) of beetle species remain to be discovered. This is …

Contrasting Effects Of Plant Richness And Composition On Insect Communities: A Field Experiment, Nick M. Haddad, David Tilman, John Haarstad, Mark Ritchie, Johannes M.H. Knops

School of Biological Sciences: Faculty Publications

We experimentally separated the effects of two components of plant diversity—plant species richness and plant functional group richness—on insect communities. Plant species richness and plant functional group richness had contrasting effects on insect abundances, a result we attributed to three factors. First, lower insect abundances at higher plant functional group richness were explained by a sampling effect, which was caused by the increasing likelihood that one low-quality group, C4 grasses, would be present and reduce average insect abundances by 25%. Second, plant biomass, which was positively related to plant functional group richness, had a strong, positive effect on insect abundances. …