Life Sciences Commons^™

Maine Lobstermen's Association Whale Update, Amber-Jean Nickel, Maine Lobstermen's Association

Fisheries

The Maine Lobstermen's Association “has been closely following the death of Right Whale 5120 found dead on Martha’s Vineyard on January 28th. The MLA was shocked and dismayed when NOAA Fisheries announced on February 14th that the rope removed from the deceased whale 'is consistent with the rope used in Maine state water trap/pot buoy lines.’”

“Maine lobstermen have made many changes to how we fish to avoid harming a Right whale which makes this news hard to believe. As we move forward, MLA will push back on NOAA’s finding until the industry’s questions about the entanglement and how NOAA …

Collaborative And Engaged Research To Strengthen Equity And Adaptive Governance In Co-Managed Fisheries, Gabrielle V. Hillyer

Electronic Theses and Dissertations

Small-scale, co-managed fisheries are found throughout the world and often represent intertwining cultures, societies, communities, economies, institutions, and governments. They face complex issues, derived from ecological and social sources. Solving these issues requires diverse expertise, often developed through engaged methodologies which can facilitate collaborative solution creation between researchers, community members, and others. In this dissertation, I demonstrate the benefits of these engaged methodologies and review how they, when coupled with anticolonial approaches to research, can create more equitable solutions to complex issues. This dissertation focuses on multiple projects within the wild clam fishery in Maine including: (1) the creation of …

Remotely Sensed Assessment Of The Preferred Habitat Of Alexandrium Catenella In The Gulf Of Maine And The Bay Of Fundy, Andre F. Bucci

Electronic Theses and Dissertations

Harmful Algal Blooms (HABs) of the toxic dinoflagellate Alexandrium catenella are an annually recurring problem in the Gulf of Maine (GoM), resulting in risks to human health and substantial economic losses due to shellfish harvesting closures. The monitoring approaches in the region are restricted to real-time identification of the HABs events, when they are clearly underway and already causing deleterious effects to the environment. To fully function as an early warning system rather than an immediate response, monitoring strategies need to be focused on environmental conditions preceding A. catenella HABs. However, the current understanding of the preferred habitat for A. …

A Biogeographical Assessment Of Arctic Marine Fungi, Bentley E. Simpson

Honors College

Marine fungi play a crucial role in recycling nutrients and channeling energy to higher trophic levels in the world oceans. Despite their critical role, their distributions and community composition, particularly in the Arctic, are largely unknown. This study reveals depth-related trends of abundance, diversity, and community composition of Arctic marine fungi through analysis of data obtained in the Tara Oceans expedition. With samples from surface (0-50 m), deep chlorophyll max (50-200 m), and mesopelagic (200-1000 m) depths, relative abundance, operational taxonomic unit (OTU) richness, and diversity were found to increase as a function of depth. Basidiomycota and Ascomycota were found …

Detrital Protein Contributes To Oyster Nutrition And Growth In The Damariscotta Estuary, Maine, Usa, Cheyenne M. Adams

Electronic Theses and Dissertations

Oyster aquaculture is an expanding industry that relies on identifying and utilizing natural estuarine conditions for the economically viable production of a filter-feeding crop. The eastern oyster, Crassostrea virginica, is the principal species currently cultured in Maine. In addition to preferentially consumed phytoplankton, various detrital complexes (non-algal and/or non-living organic matter) may provide some nutrition to C. virginica between times of phytoplankton abundance. Here I investigated the importance of detrital proteins in supporting the growth of oysters cultured in the upper Damariscotta Estuary. Oyster aquaculture in this area is highly successful and previous reports indicate that labile detrital protein …

Roles Of Siphon Flows In Suspension Feeding, Kevin Du Clos

Electronic Theses and Dissertations

Benthic marine suspension feeders provide an important link between benthic and pelagic ecosystems. The strength of this link is determined by suspension-feeding rates. Many studies have measured suspension-feeding rates using indirect clearance-rate methods, which are based on the depletion of suspended particles. Direct methods that measure the flow of water itself are less common, but they can be more broadly applied because clearance-rate measurements are affected by properties of the cleared particles. We present pumping rates for three species of suspension feeders, the clams Mya arenaria and Mercenaria mercenaria and the tunicate Ciona intestinalis, calculated using a direct method …

Size As A Trait For Understanding The Role Of Zooplankton In The Biological Carbon Pump, Karen Stamieszkin

Electronic Theses and Dissertations

Living organisms impact carbon transport between the atmosphere and the ocean through the biological carbon pump. Some plankton communities augment carbon export from the ocean’s surface, and are thought to have a major role in global climate. These export communities are often characterized by larger organisms that sink to depths where the carbon they contain is sequestered from the atmosphere. Zooplankton can enhance export by aggregating prey into larger sinking fecal pellets; however fecal pellet flux is a highly variable component of the biological carbon pump. Relating plankton trophic dynamics to changes in particulate carbon flux is an important step …

The American Lobster Settlement Index: An Early Warning System?, Maine Sea Grant College Program

Maine Sea Grant Publications

The harvest of American lobsters is the Gulf of Maine’s largest, most valuable, and most iconic fishery. The catch has never been higher, but how long will it last? Fishing communities in eastern Maine and southern Nova Scotia are seeing historically high landings, some five times higher than the 1980s. At the same time, the lobster fishery south of Cape Cod has all but collapsed, plagued by shell disease and stressfully warm summers. It has never been more important to monitor this vital fishery. The American Lobster Settlement Index measures the annual pulse of baby lobsters to rocky nurseries some …

Rapid: Effect Of A Very Low Nao Event On The Abundance Of The Lipid-Rich Planktonic Copepod, Calanus Finmarchicus, In The Gulf Of Maine, Jeffrey Runge

University of Maine Office of Research Administration: Grant Reports

Test the hypothesis that a distinctly lower abundance of the planktonic copepod, Calanus finmarchicus in the Gulf of Maine follows the occurrence of very negative winter phases of the North Atlantic Oscillation (NAO). In 2010, the station-based winter NAO index was -4.64, even more intense than the negative (-3.78) 1996 NAO winter index. If a two-year lagged relationship between very negative NAO winter indices and Calanus abundance in the Gulf of Maine is valid, cooler water from the Labrador Sea should replace Atlantic Temperate Slope Water in the GoM in 2012, inducing a major climatic ecosystem event on the New …

Rapid: Natural Laboratories In The Chilean Fjords: Studying Reproduction And Development In Emergent Deep-Sea Corals, Rhian G. Waller

University of Maine Office of Research Administration: Grant Reports

The northern Patagonian fjords lie on the interface between the high Andes Mountains in the east and the South Pacific Ocean, formed thousands of years ago through erosive glacial activity and tectonic sinking (Borgel, 1970). Around 12,000 years ago the icefields in the Chiloé Interior Sea began to open, leaving behind over 15,000km2 of fjords, channels and gulfs (Clapperton, 1994). The waters within the fjords are influenced by strong tides, large volumes of freshwater runoff, and upwelling of deep-ocean waters as well as steep climatic gradients from north to south (observed in parameters such as temperature, wind intensity and precipitation; …

Understanding Copepod Life-History And Diversity Using A Next-Generation Zooplankton Model, Andrew J. Pershing, Frederic Maps, Nicholas R. Record

University of Maine Office of Research Administration: Grant Reports

The main goal of our project is to understand the patterns of diversity and biogeography in marine copepods. To achieve this goal, we developed a unique modeling framework to simulate the trade-offs between growth, development, and fecundity in marine copepods.

We developed a new approach to modeling growth and development in metazoans. We applied this approach to marine copepods, and used it to understand relationships between copepod body size and temperature, copepod biodiversity patterns, and copepod biogeography. This project also provided support for experiments to look at how copepod body size impacts the particle size spectrum.

We used our model …

Understanding Copepod Life-History And Diversity Using A Next-Generation Zooplankton Model, Andrew J. Pershing, Frederic Maps, Nicholas Record

University of Maine Office of Research Administration: Grant Reports

Evolution has shaped the physiology, life history, and behavior of a species to the physical conditions and to the communities of predators and prey within its range. Within a community, the number of species is determined by both physical properties such as temperature and biological properties like the magnitude and timing of primary productivity, and ecological interactions such as predation. Despite well-known correlations between diversity and properties such as temperature, the mechanisms that drive these correlations are not well-described, especially in the oceans. The investigators will conduct a model-based investigation of diversity patterns in marine ecosystems, focusing on calanoid copepods. …

Functional Diversity Of Subsurface Deposit Feeders, Peter A. Jumars, Sara M. Lindsay

University of Maine Office of Research Administration: Grant Reports

The major goals of the project are to gain a comprehensive understanding of polychaete chemosensory behaviors below the sediment-water interface and to understand how burrowing displaces sediment grains.

A method and apparatus for investigating subsurface properties of sediment, soil, snow, food stuff and other soft materials incorporates a probe head, preferably in the form of a coil spring that functions as a screw thread, which moves into the soil, snow, sediment, food stuff or other soft material, isolates a column of the material and applies tension to that column while measuring the applied force with a force sensor.

Cnh: Collaborative Research: Direct And Indirect Coupling Of Fisheries Through Economic, Regulatory, Environmental, And Ecological Linkages, Andrew J. Pershing, Yong Chen, Jeffrey Runge

University of Maine Office of Research Administration: Grant Reports

The productivity and resilience of fisheries are subject to a multitude of dynamic and interrelated influences that arise from complex coupling of fish populations with the natural and human systems of which they are a part. With few exceptions, fisheries currently are managed independently, ignoring important natural and human linkages among them. The biological productivity, sustainability, and consequently human benefits of complex fishery systems may be substantially increased if these linkages are better understood and if this understanding is applied to management. The American lobster (Homarus americanus), Atlantic herring (Clupea harengus) and Northeast multispecies groundfish fisheries in the Gulf of …

Fisheries Management In A Changing Climate: Lessons From The 2012 Ocean Heat Wave In The Northwest Atlantic., Katherine E. Mills, Andrew Pershing, Curtis J. Brown, Yong Chen, Fu-Sung Chiang, Daniel S. Holland, Sigrid Lehuta, Janet A. Nye, Jenny C. Sun, Andrew C. Thomas, Richard A. Wahle

Publications

No abstract provided.

Eager: Collaborative Research: Developing Transformation Technologies For Porphyra, Susan H. Brawley

University of Maine Office of Research Administration: Grant Reports

The genome of the marine red alga Porphyra umbilicalis is being sequenced by the Joint Genome Institute. The sequence information will help scientists address many fundamental questions, because Porphyra spp. belong to an ancient eukaryotic lineage, are important human foods ("nori"), have complex life histories, and---even compared to other intertidal organisms--- possess an unusually stress-tolerant metabolism. Computer-based analyses of the new genomic data will be sufficient to address some research questions, but most studies (e.g., the basis of Porphyra's tolerance to extreme drying or high light) will require experimental approaches based upon bioinformatics analyses. This project will develop the essential …

Collaborative Research: Life Histories Of Species In The Genus Calanus In The North Atlantic And North Pacific Oceans And Responses To Climate Forcing, Jeffrey Runge, Andrew J. Pershing

University of Maine Office of Research Administration: Grant Reports

Species in the genus Calanus are predominant in the mesozooplankton of the North Atlantic and North Pacific Oceans. Their key role in marine food web interactions has been recognized in GLOBEC programs, both in the U.S. and internationally. Considerable knowledge of life history characteristics, including growth, reproduction, mortality, diapause behavior and demography has been acquired from both laboratory experiments and measurements at sea. This project reviews and synthesizes this knowledge and uses it to develop an Individual Based Life Cycle model for sibling species in two sympatric species pairs, C.marshallae and C. pacificus in the North Pacific Ocean and C. …

Dissertation Research: Eco-Evolutionary Effects Of An Aquatic Consumer: Linking Phenotypic Diversity To Community And Ecosystem Responses, Kevin S. Simon, Quenton Tuckett, Michael T. Kinnison

University of Maine Office of Research Administration: Grant Reports

This research addresses the interaction between ecological and evolutionary processes by examining the recent evolution of a common invasive fish species, the white perch, in lakes and the consequences of this evolution for community and ecosystem dynamics. White perch have successfully invaded lakes spanning a productivity gradient, which provides diverse selective pressures that may result in altered fish morphology, physiology and ecological role. Adaptation by these fish may, in turn, feed back to affect lake productivity and community structure through several ecological and chemical pathways. This project tests the hypothesis that this rapid evolutionary divergence within a single species has …

Improvements To Sampling From The Research Vessel Ira C, Mary Jane Perry

University of Maine Office of Research Administration: Grant Reports

The University of Maine's Darling Marine Center is awarded a grant to equip the 42-ft Ira C., the Center's largest vessel, with a well instrumented CTD, including optical sensors and a small array of sampling bottles plus a winch with conducting cable so that CTD work from the Ira C. no longer needs to depend on users bringing their own CTD and lowering by hand. This proposal is to expand the environments and variables within effective reach of the University of Maine's marine laboratory, the Ira C. Darling Marine Center (the Center) in midcoast Maine. The Center is within a …

Interannual Variability In American Lobster Settlement: Correlations With Sea Surface Temperature, Wind Stress And River Discharge, Mahima Jaini

Electronic Theses and Dissertations

Recruitment to benthic marine populations is fundamentally a biophysical problem. The American Lobster Settlement Index is an annual diver-based survey of the young-of-year American lobsters (Homarus americanus) found in inshore nurseries in New England, USA and Atlantic Canada at the end of the postlarval settlement season. The considerable interannual variability in the settlement index suggests that environmental factors play an important role in regulating planktonic larval supply and transport. In this study, I focused on the longest settlement time series from three oceanographically contrasting regions: Midcoast Maine, coastal Rhode Island and the lower Bay of Fundy. Sampling in these regions …

Analysis Of Optical Spikes Reveals Dynamics Of Aggregates In The Twilight Zone, Nathan Briggs

Electronic Theses and Dissertations

The "biological pump," whereby phytoplankton grow in the surface ocean, aggregate, and sink, is a critical process contributing to global atmospheric CO2 drawdown and provides the vast majority of food for deep ocean and benthic ecosystems. The strength of this pump hinges on the amount of material that stick together to form larger aggregates, the sinking rates of these aggregates, and the rate at which they are consumed as they sink. However, marine aggregates, also called "marine snow," are often fragile and notoriously difficult to sample, their sinking rates are highly variable and difficult to quantify, and their concentrations can …

U.S. Globec: Nwa Georges Bank - Processes Controlling Abundance Of Dominant Copepod Species On Georges Bank: Local Dynamics And Large-Scale Forcing, Jeffrey A. Runge

University of Maine Office of Research Administration: Grant Reports

A fundamental goal of Biological Oceanography is to understand how underlying biological-physical interactions determine abundance of marine organisms. For animal populations, it is well known that factors controlling survival during early life stages (i.e., recruitment) are strong determinants of adult population size, but understanding these processes has been difficult due to model and data limitations. Recent advances in numerical modeling, together with new 3D data sets, provide a unique opportunity to study the biological-physical processes controlling zooplankton population size. This project uses an existing state-of-the-art biological/physical numerical model (FVCOM) together with the recently processed large 3D data set from the …

Collaborative Proposal: Cascadia Slope Circulation Study, Mary Jane Perry

University of Maine Office of Research Administration: Grant Reports

Intellectual Merits:
This project will continue to observe and understand the physics and biology of the highly productive northeast Pacific boundary current region over the continental slope off Washington and Oregon - the Cascadia slope - with an autonomous, sustained presence. For over a year, Seagliders, long-range autonomous underwater vehicles, have been deployed to survey the temperature, salinity, dissolved, oxygen, chlorophyll fluorescence, and optical backscatter structure of the slope off. Washington. Seagliders have collected data on sections from the continental shelf edge offshore 220 km at fortnightly intervals, reporting back data after each dive, on deployments typically lasting 4-5 months. …

Salinity And Stratification In The Gulf Of Maine: 2001-2008, Heather E. Deese-Riordan

Electronic Theses and Dissertations

The salinity and vertical density structure (stratification) of the Gulf of Maine strongly influence the physical and biological character of the region including: circulation and transport, vertical mixing, and primary productivity. Variability in salinity and stratification also provides insights into the character and timing of the oceanic waters entering the region, a key to predicting regional climate change. This thesis addresses outstanding questions related to variability in salinity and the relative role of salinity and temperature in creating stratification. Hourly observations from Ocean Observing System buoys throughout the Gulf provide the primary data source for this investigation. Analysis of estimated …

Investigating Saxitoxin Resistance In Softshell Clams (Mya Arenaria): Patterns Of Inheritance And Improvements On Methodology For Tracking And Identification, Scott A. Hamilton

Electronic Theses and Dissertations

Attempts to characterize and study the population dynamics of the softshell clam Mya arenaria in relation to a mutation which confers resistance to paralytic shellfish toxins are complicated by a lack of non-lethal genotyping techniques, reliable tagging methods and an understanding of the inheritance patterns of the marker. Presented here, is a straightforward and non-lethal technique for clam genotyping, a new method for the long term tagging of clams, and the offspring genotype frequencies from a number of pair matings between clams of known genotype. Hemolymph extracted from M. arenaria was used directly in a polymerase chain reaction (PCR) to …

An Assessment Of Alternative Feed Ingredients In Practical Diets For Florida Pompano (Trachinotus Carolinus) Held In Low Salinity Recirculating Systems, Terhea Nichole Williams

Electronic Theses and Dissertations

The identification of alternative protein sources for partial or whole replacement of fishmeal (FM) is a priority in the development of suitable, low cost feed formulations for the Florida pompano (Trachinotus carolinus). To evaluate alternative feed ingredients for the potential replacement of FM in diets fed to juvenile pompano, a series of four experiments were conducted. The objectives of Experiments 1 and 2 were to determine the apparent digestibility of crude protein (ADCP), energy (ADE), and apparent amino acid availability (AAAA) of three plant based ingredients (soybean meal (SBM), soy protein isolate (SPI), corn gluten meal (CGM)) and three by-product …

Mechanics Of Burrowing In Muddy Sediments, Kelly M. Dorgan

Electronic Theses and Dissertations

Marine muds are elastic solids through which animals move by propagating a crack-shaped burrow. Dilations previously considered anchors serve to exert dorsoventral compressive stresses on the burrow walls that, through elastic behavior of the medium, focus strongly at the tip of the burrow. This focused stress breaks adhesive or cohesive bonds, propagating a crack for the animal to follow. The force exerted by the polychaete, Nereis virens, to propagate a crack has been measured in gelatin, an analogue of muddy sediment, through photoelastic stress analysis. Finite element analysis was used to convert measured forces to those exerted in natural sediments …

Assessment Of The Flame Angelfish (Centropyge Loriculus) As A Model Species In Studies On Egg And Larval Quality In Marine Fishes, Chatham K. Callan

Electronic Theses and Dissertations

This project sought to determine if flame angelfish (Centropyge loriculus) could serve as models in examination of environmental and dietary effects on egg quality in marine fishes. Evaluation of 21 marine ornamental species identified flame angelfish as being amenable to egg quality research, due to their rapid conditioning and frequency of spawning. At the onset of this project, accidental copper introduction to broodstock systems required assays to determine the effects of copper exposure on survival and reproduction. Flame angelfish exhibited accute sensitivity to copper, as 60% of fish exposed to 0.25mg/L died within 12 hours of exposure. Likewise, fish exposed …

Collaborative Proposal: Form And Function Of Phytoplankton In Unsteady, Low Reynolds-Number Flows, Peter Jumars, Lee Karp-Boss

University of Maine Office of Research Administration: Grant Reports

Small-scale flow dynamics at low Reynolds numbers (Re) are important to phytoplankton cells in delivery of nutrients, sensory detection by and physical encounter with herbivores, accumulation of bacterial populations in the "phycosphere" or region immediately surrounding phytoplankton cells and coagulation of cells themselves as a mechanism terminating blooms. In nature most phytoplankton experience unsteady flows, i.e., velocities near the cells that vary with time due to the intermittency of turbulence and to discontinuous, spatially distributed pumping by herbivores. This unsteadiness has not previously been taken into account in models or measurements with plankton. Moreover, there have been decade- and century- …

Ner: Exploratory Research On Developing A Nanoscale Sensing Device For Measuring The Supply Of Iron To Eukaryotic Phytoplankton In Natural Seawater, Mark L. Wells

University of Maine Office of Research Administration: Grant Reports

The long delay in recognizing the potentially key role of Fe in coastal marine systems has been in large part because of the complexity of microbial:Fe interactions in seawater. There still is no analytical method for determining biologically available Fe for either prokaryotic or eukaryotic phytoplankton. However, there is evidence that Fe availability to eukaryotic phytoplankton can be regulated by additions of the fungal siderophore desferrioxamine B (DFB) to coastal waters. The DFB-Fe complex not only is unavailable for uptake at significant rates, but also outcompetes the natural organic ligand classes in seawater for Fe. Measurement of DFB-Fe concentrations in …