Life Sciences Commons^™

Stellaris Fish Workshop Gadph And Dapi Z-Series, George Mcnamara

George McNamara

Stellaris FISH workshop GADPH and DAPI Z-series at MD Anderson Cancer Center, Houston, TX.

The zip file contains raw and GPU deconvolved image data from a workshop Biosearch Technologies conducted for MDACC researchers in December 2013. Image data was acquired on a Leica DMI6000 microscope with Lumencor SOLA light engine, DAPI and Cy5 filter cubes, Hamamatsu ORCA FLASH4.0 sCMOS camera (500 ms exposure time per plane for Quasar 670).

Pixel size 100 nm XY.

Z-step size 200 nm.

32 planes (power of 2 is optimal for GPU deconvolution). With 500 ms exposure time, the Quasar 670 GADPH FISH probes images …

The Empire Of Cancer: Gene Patents And Cancer Voices, Matthew Rimmer

Matthew Rimmer

In his book, The Emperor of All Maladies, Siddhartha Mukherjee writes a history of cancer — ‘It is a chronicle of an ancient disease — once a clandestine, “whispered-about” illness — that has metamorphosed into a lethal shape-shifting entity imbued with such penetrating metaphorical, medical, scientific, and political potency that cancer is often described as the defining plague of our generation’.Increasingly, an important theme in the history of cancer is the role of law, particularly in the field of intellectual property law. It is striking that a number of contemporary policy debates over intellectual property and public health have concerned …

Geoexes - My Dos Executables - Use At Your Own Risk, George Mcnamara

George McNamara

The downloadable ZIP file contains old Turbo Pascal programs I wrote. These ran in Microscoft DOS and in early Windows (ex. Windows 3.1) DOS shells. They may or may not work in recent (Windows 2000, XP, Vista, 7) cmd or command "shells". No warranty. Use at your own risk. I do not expect to ever program in Turbo Pascal again so if anyone wants to "take over" my old code (and adjust copyirght notices, warnings, etc), please email me. In particular, MATH.exe had 10,000 lines of pascal code in it. Another program is LUTSconv.exe which converted Fractint MAP lookup tables …

Differential Habitat Use By Common Watersnakes (Nerodia Sipedon), Lorin A. Neuman-Lee, Andrew M. Durso, Nicholas M. Kiriazis, Melanie J. Olds, Stephen J. Mullin

Stephen J. Mullin

Understanding intraspecific variation in habitat use is important for the management of any species. In many studies of reptiles, habitat use by juveniles is poorly understood when compared to their adult conspecifics because of capture biases and logistical constraints. We compared habitat use between sexes and age classes of Common Watersnakes (Nerodia sipedon) at a reservoir in central Illinois. Juvenile N. sipedon occurred more frequently in habitat with high canopy cover, whereas adult N. sipedon, especially reproductive females, were found exclusively in habitat with no canopy cover. Adult males used both locations equally. We emphasize the need to investigate ontogenetic …

Effects Of Rest Interval Length On Smith Machine Bench Press Performance And Perceived Exertion In Trained Men, Ramires A. Tibana, Denis C. Vieira, Vitor Tajra, Martim Bottaro, Belmiro F. De Salles, Jeffrey Willardson, Jonato Prestes

Jeffrey Willardson

This study compared two different rest intervals (RI) between sets of resistance exercise. Ten resistance-trained men (M age = 24.3, SD = 3.5 yr.; M weigh t= 80.0 kg, SD = 15.3; M height = 1.75 m, SD = 0.04) performed five sets of Smith machine bench presses at 60% of one repetition maximum, either with 1.5 min. or 3 min. RI between sets. Their repetition performance, total training volume, velocity, fatigue, rating of perceived exertion, and muscular power were measured. All of these measures indicated that performance was significantly better and fatigue was significantly lower in the 3 min. …

Ultra-Deep Pyrosequencing Of Partial Surface Protein Genes From Infectious Salmon Anaemia Virus (Isav) Suggest Novel Mechanisms Involved In Transition To Virulence, Torstein Tengs Dr.

Dr. Torstein Tengs

Uncultivable HPR0 strains of infectious salmon anaemia viruses (ISAVs) infecting gills are non-virulent putative precursors of virulent ISAVs (vISAVs) causing systemic disease in farmed Atlantic salmon (Salmo salar). The transition to virulence involves two molecular events, a deletion in the highly polymorphic region (HPR) of the hemagglutinin-esterase (HE) gene and a Q266→L266 substitution or insertion next to the putative cleavage site (R267) in the fusion protein (F). We have performed ultra-deep pyrosequencing (UDPS) of these gene regions from healthy fish positive for HPR0 virus carrying full-length HPR sampled in a screening program, and a vISAV strain from an ISA outbreak …

Stellaris Fishing 20131125mon Part 1 Of 2, George Mcnamara

George McNamara

Stellaris FISH dataset using three FISH probe sets. Slides courtesy of Biosearch Technologies,

https://www.biosearchtech.com/store/product.aspx?catid=224,318,324

see http://stellarisfish.smugmug.com/ for online gallery by Biosearch.

This experiment was to evaluate the crosstalk between the Biosearch fluorophores:

Quasar 570

CAL Fluor Red 610 (CFR 610)

Quasar 670

DAPI (DNA counterstain)

Autofluorescence (green, but sometimes showing up in other channels).

and our lab's Leica DMI6000 fluorescence microscope with Leica filter sets:

DAPI

GFP (L5)

Cy3 (N3)

Texas Red (TxRed2)

Cy5 (Y5)

I also acquired green channel and red channel with exciter filters in our ASI excitation wheel:

GFP + 492 exciter

Texas Red (TxRed2) + 572 …

Stellaris Fishing 20131125mon Part 2 Of 2, George Mcnamara

George McNamara

Stellaris FISH dataset using three FISH probe sets.

Slides courtesy of Biosearch Technologies,

https://www.biosearchtech.com/store/product.aspx?catid=224,318,324

see http://stellarisfish.smugmug.com/ for online gallery by Biosearch.

This experiment was to evaluate the crosstalk between the Biosearch fluorophores:

Quasar 570

CAL Fluor Red 610 (CFR 610)

Quasar 670

DAPI (DNA counterstain)

Autofluorescence (green, but sometimes showing up in other channels).

and our lab's Leica DMI6000 fluorescence microscope with Leica filter sets:

DAPI

GFP (L5)

Cy3 (N3)

Texas Red (TxRed2)

Cy5 (Y5)

I also acquired green channel and red channel with exciter filters in our ASI excitation wheel:

GFP + 492 exciter

Texas Red (TxRed2) + 572 …

Monohybrid Mendelian Segregation In An Interspecific Hybrid Population Of Tetraploid X Diploid Coffea Species- Part 2, Anil Kumar, Subbugan Ganesh, Central Coffee Research Institute

Emily Scott

Coffee possesses normal sexual propagation behaviour and exhibits various characters in a large population. The work on the extent of variation is very limited and not well understood. In this context a study was undertaken during 2008-2011 to study the monohybrid segregation pattern in F2 population of C. arabica cv. ‘Cauvery’x (C. congensis x C. canephora var. robusta) established at Coffee Research Sub Station, Chettalli, Kodagu District, Karnataka in the year 2002. The results revealed that coffee varieties grown under Indian conditions possessed dependent and independent characters. The dependent characters followed the independent assortment along with closely associated characters and …

Zebrafish: An In Vivo Model For The Study Of Human Diseases, Bibhas Kar, Sivamani Subbiah

Emily Scott

The zebrafish (Danio rerio) is a powerful model organism for the study of vertebrate biology, being well suited to both developmental and genetic analysis. More recently, the rapid progress of various zebrafish genomics infrastructure initiatives is facilitating the development of zebrafish models of human disease. Genome organization and the pathways involved into control of signal transduction appear to be highly conserved between zebrafish and humans and therefore zebrafish may be used for modeling of human diseases. This review will highlight and describe the utility of zebrafish in the study of human diseases.

Water Stress Strengthens Mutualism Among Ants, Trees, And Scale Insects, Elizabeth G. Pringle, Erol Akc¸Ay, Ted K. Raab, Rodolfo Dirzo, Deborah M. Gordon

Ted K. Raab

Abiotic environmental variables strongly affect the outcomes of species interactions. For example, mutualistic interactions between species are often stronger when resources are limited. The effect might be indirect: water stress on plants can lead to carbon stress, which could alter carbon-mediated plant mutualisms. In mutualistic ant–plant symbioses, plants host ant colonies that defend them against herbivores. Here we show that the partners’ investments in a widespread ant–plant symbiosis increase with water stress across 26 sites along a Mesoamerican precipitation gradient. At lower precipitation levels, Cordia alliodora trees invest more carbon in Azteca ants via phloem-feeding scale insects that provide the …

Evaluation Of The Utility Of Deciduous Molar Morphological Variation In Great Ape Phylogenetic Analysis, Anna M. Hardin, Scott S. Legge

Scott Legge

Non-metric dental traits are well- established tools for anthropologists investigating population affiliation and movement in humans. Nonetheless, similar traits in the great apes have received considerably less attention. The present study provides data on non-metric trait variability in the deciduous molars of great apes from museum context. Twenty-eight traits are observed in the upper and lower deciduous molars in specimens of Pan troglodytes, Pan paniscus, Gorilla gorilla, and Gorilla beringei. These groups are compared based on trait frequencies and mean measures of divergence. This study demonstrates the variability of non-metric traits in the deciduous molars of chimpanzees and gorillas. These …

Progress And Future Prospects Of Developing Transgenics In Mango, Rajesh Pati

Rajesh Pati

Mango (Mangifera indica L.) is the most important fruit crop of the world. India ranks first among world’s mango producing countries accounting for 57.18 % of the total world mango production of 19.22 million tones. With the development of rDNA technology, plant breeders have access to a large number of genes that can be integrated into the plant genome.

Histological And Biochemical Changes In Aegle Marmelos, Rajesh Pati

Rajesh Pati

Aegle marmelos Corr., belongs to family Rutaceae, is more prized for its pharmacological virtues than its edible quality. Because of pharmacological importance, it’s become potential candidate for developing transgenics to enhance its medicinal properties. Maximum mortality of micropropagated plants occur during acclimatization phase because plantlets undergo rapid and extreme changes in physiological functioning, histological and biochemical changes. In order to investigate the actual reason of this limitation, test samples were collected at different stages of micropropagation of Aegle marmelos Corr. (In vitro stage, acclimation stage, and field established plants).

Somatic Embryogenesis In Mono And Poly Embryonic Cultivars, Rajesh Pati

Rajesh Pati

A standard uniform protocol of regeneration is the prime and foremost prerequisite for not only improve the productivity, the production from the existing area but also development of transgenics in mango for various traits. Polyembryonic cultivars are good rootstock because of moderate canopy, tolerant to draught, salt, environmental stress (wind, high temperature, air pollution), fungal disease (anthracnose, powdery mildew, gummosis) and hoppers.

Genetic Transformation Of Bael (Aegle Marmelos Corr.), Rajesh Pati

Rajesh Pati

Aegle marmelos Corr. is better known for its medicinal values rather than its edible quality. Every part of the plant viz. leaves, fruits, roots, and the bark are used for treating various diseases related to heart, stomach, bacterial, fungal, viral, worms, fertility, fever and cosmetics. Marmelosin is one of the major compounds (coumarin), used to treat various diseases. Till date, there are no varieties developed for commercial orchards of Bael and hence, regarded as one among the underutilized fruits of India. Therefore, there is an urgent need for breeding new and cultivable varieties in Aegle marmelos. But the problem for …

Micropropagation In Fruit Crops, Rajesh Pati

Rajesh Pati

Micropropagation is a proven means of producing millions of identical plants under a controlled and aseptic condition, independent of seasonal constraints. It not only provides economy of time and space but also gives greater output and allows further augmentation of elite disease free propagules. India is homeland of many important fruit crops such as Indian gooseberry (Emblica officinalis Gaertn), bael (Aegle marmelos Corr.), Guava (, Psidium guajava), jamun or black plum (Syzygium cuminii L. Skeels.), Mango (Mangifera indica) and Papaya (Carica papaya).

In Vitro Plant Regeneration And Genetic Assessment Among Regenerates Using Molecular Markers In Aegle Marmelos Corr., Rajesh Pati

Rajesh Pati

Bael (Aegle marmelos Corr.) is an important medicinal fruit tree. The fruit pulp contains marmelosin, which is a laxative, diuretic, is being used in many patented drugs in India. Micropropagation technology can be gainfully employed in mass multiplication of improved bael varieties. We have developed micropropagation protocol of bael through shoot bud culture. It was imperative to test genetic fidelity of micropropagated plants using molecular markers (RAPD, DAMD and ISSR).

Survival Of The Selfish: Natural Selection And The Myth Of Altruism, Kyle O'Shea

The Intellectual Standard

No abstract provided.

Effects Of Deterioration Parameters On Storage Of Maize: A Review, Rashid A. Suleiman

RASHID A SULEIMAN

Maize (Zea mays L), commonly known as corn in the United States, is the third most important cereal grain worldwide, after wheat and rice. It is a basic staple grain for large groups of people in Africa, Latin America, and Asia. In tropical countries, a large proportion of the maize is harvested and stored under humid and warm climatic conditions, which subsequently results in rapid deterioration of the grains, mainly because of growth of molds and pests. This study reviewed the main factors that lead to deterioration of maize in tropical countries and suggests ways of preventing the identified causes. …

Antifungal Activity Of Lactobacillus Plantarum Lab-C5 And Lab-G7 Isolated From Malaysian Fruits, Asma Saleh Elmabrok

Asma Saleh Elmabrok

Abstract Anthracnose disease for both seed and air borne and affects seed germination and plant vigor to a greater extent. Biological control by antagonistic microorganisms is widely recognized as a promising method for control plant diseases. This study reports the effectiveness of using lactic acid bacteria (LAB) cultures or their supernatant as a biological control against anthracnose disease in chilli caused by fungus Colletotrichum gloeosporioides. From 30 lactic acid bacteria isolated from different sources, seven isolates showed good inhibition activity against C. gloeosporioides by dual overlay method and well method. These LAB have antifungal activity grew between 10 and 45oC, …

Antifungal Activity Of Lactobacillus Plantarum Lab-C5 And Lab-G7 Isolated From Malaysian Fruits, Asma Saleh Elmabrok, Khaled M.A Hussin

Khaled M.A Hussin

Abstract Anthracnose disease for both seed and air borne and affects seed germination and plant vigor to a greater extent. Biological control by antagonistic microorganisms is widely recognized as a promising method for control plant diseases. This study reports the effectiveness of using lactic acid bacteria (LAB) cultures or their supernatant as a biological control against anthracnose disease in chilli caused by fungus Colletotrichum gloeosporioides. From 30 lactic acid bacteria isolated from different sources, seven isolates showed good inhibition activity against C. gloeosporioides by dual overlay method and well method. These LAB have antifungal activity grew between 10 and 45oC, …

National Food Security Bill, Vijaya Krushna Varma Mr

VIJAYA KRUSHNA VARMA Mr

Unless and until the Government augments the indigenous food production substantially over present production; modernize and increases the storage capacity for food grains; streamlines public distribution system and selects genuine beneficiaries; the dream of providing the balanced nutritious food for all people will not become real.

Effect Of Bio Field Treatment On The Physical And Thermal Characteristics Of Silicon, Tin And Lead Powders., Mahendra Kumar Trivedi

Mahendra Kumar Trivedi

Silicon, tin and lead powders belong to group IV in periodic table and exhibit decreasing semi conducting nature towards the bottom of the group. These are very useful in producing non ferrous powder metallurgy components.

In the present investigation silicon, tin and lead powders are exposed to bio field. Both the exposed and unexposed powders are later characterized by various techniques. The average particle size, after an initial decrease is found to increase with increase in number of days after treatment although the size is lee than that exhibited by untreated powder, suggesting the operation of competing mechanisms fracture and …

Brain Activity And Medical Diagnosis: An Eeg Study, Laila M. Ribas, Fábio T. Rocha, Neli R. Ortega, Armando F. Rocha, Eduardo Massad

Armando F Rocha

Despite new brain imaging techniques that have improved the study of the underlying processes of human decision-making, to the best of our knowledge, there have been very few studies that have attempted to investigate brain activity during medical diagnostic processing.The main purpose of this paper was to investigate brain electroencephalography (EEG) activity associated with diagnostic decision-making in the realm of veterinary medicine using X-rays as a fundamental auxiliary test. The principal component analysis revealed four patterns that accounted for 85% of the total variance in the EEG activity recorded while veterinary doctors read a clinical history, examined an X-ray image …

Effect Of Variability In Rainfall Characteristics On Maize Yield In Gboko, Nigeria, Emmanuel Msughter Adamgbe, Fanan Ujoh Ph.D

Dr. Fanan Ujoh

The study examines the impact of variability in rainfall characteristics on maize yield in a tropical setting. The study design involves the collection and analyses of data on rainfall characteristics and maize yield at Gboko LGA in Benue State, Nigeria. The methodology adopted is the use of archival data on rainfall and maize yield for 30 years, collected from the Agro-Meteorological Unit and Farm Department of Akperan Orshi College of Agriculture, Yandev (AOCAY). The data was analyzed using mean, correlation and regression analysis to establish cause and effect relationship be- tween rainfall characteristics and maize yield at the study area. …

Influence Of Exercise Order On Upper Body Maximum And Submaximal Strength Gains In Trained Men, Claudio O. Assumpcao, Ramires A. Tibana, Luan C. Viana, Jeffrey Willardson, Jonato Prestes

Jeffrey Willardson

The purpose of this study was to investigate the influence of exercise order on one-repetition maximum (1-RM) and ten-repetition maximum (10-RM) strength gains after 6 weeks of resistance training (RT) in trained men. Sixteen men were randomly assigned into two groups based on the order of exercises performed during training sessions: a group that performed large muscle group exercises first and progressed to small muscle group exercises (LG-SM); while a second group performed the opposite sequence and started with small muscle group exercises and progressed to large muscle group exercises (SM-LG). Four sessions of RT were conducted per week; all …

Hamamatsu Flash4.0 Scmos Exposure Time Series, George Mcnamara

George McNamara

Hamamatsu FLASH4.0 scientific cMOS camera exposure time series are pairs of images of:

1 millisecond (00,001ms series)

10 millisecond (00,010ms series)

100 millisecond (00,100ms series)

1,000 millisecond (01,000ms series)

4,000 millisecond (04,000ms series)

10,000 millisecond (10,000ms series)

I also included:

* difference images (exposure 2 minus exposure 1 plus 100 intensity values).

* a series of eleven 1 second (1,000 ms) exposure time images in a multi-plane TIFF file (different images than the pair of 1,000ms images above).

* Stack Arithmetic: Median, Average, Minimum, Maximum, of the eleven plane series (Stack Arithmetic is a MetaMorph command).

These images were acquired …

Fluorescence Microscopy Digital Deconvolution Comparison, George Mcnamara, Vinita Popat

George McNamara

Presentation by Ms. Vinita Popat, Cornell University, 2013 summer student in Prof. Laurence J.N. Cooper lab, MD Anderson Cancer Center, Houston, TX. Project was evaluation of several deconvolution software for improving (or making worse!) fluorescence microscopy Z-series.

Kisspeptin Receptor Agonist (Ftm080) Increased Plasma Concentrations Of Luteinizing Hormone In Anestrous Ewes, Brian K. Whitlock, Kelly A. Chameroy, Rebecca R. Payton, Shinya Oishi, Nobutaka Fujii, Joseph A. Daniel

Brian K Whitlock, PhD, DVM, DACT

Kisspeptin (KP) and the KP receptor (Kiss1r) are integral to central regulation of the gonadotropic-axis. The demonstration that intravenous infusion of KP can stimulate gonadotropin secretion and ovulation in seasonally anestrous female sheep offers a means of manipulating the reproductive axis. However, KP may be of limited clinical use because of the short circulating half-life. Kiss1r agonists with increased half-life and similar efficacy to KP in vitro potentially may provide beneficial applications in breeding management of many species. However, many of these agonists have not been tested in vivo. This study was designed to test and compare the effects of …