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Full-Text Articles in Life Sciences

Fireflies At Rpa Natural Area Final Report, Olivia H. Bush, Sydney M. Shea, Sofia J. Gordon, Nick S. Wiebke May 2024

Fireflies At Rpa Natural Area Final Report, Olivia H. Bush, Sydney M. Shea, Sofia J. Gordon, Nick S. Wiebke

Final Reports in ENST 411: Environmental Community Projects

Our group worked alongside community partners Shaunna Barnhart and Jim Dunn during the Spring 2024 semester to assist with their annual event Fireflies at RPA Natural Area. RPA Natural Area is a local park in South Williamsport, Pennsylvania that was recently acquired by Southside Recreational Authority. Since taking over the park, the organization has begun hosting an event each July to educate the general public about firefly biology and conservation by showing a film and guiding attendees through a firefly tour through the park. Our goals for this project included creating physical educational materials to be used at the park …


Cross-Pollination: Building A Co-Taught Course To Examine Art And Sex Through The Lens Of Botany, Christopher T. Martine, Diamanda A. Zizis, Anna K. Kell May 2024

Cross-Pollination: Building A Co-Taught Course To Examine Art And Sex Through The Lens Of Botany, Christopher T. Martine, Diamanda A. Zizis, Anna K. Kell

Faculty Journal Articles

Driven by overlapping interests in plants, art, and diversity in sex expression, Anna Kell (Department of Art and Art History) and Chris Martine (Department of Biology) developed a course that integrates the perspectives of a visual artist and a botanist. Art & Sex Through the Lens of Botany seeks to impart the importance of making connections across disciplines and the value of visual literacy across academic lines. The course introduces foundational concepts in each field and encourages students to integrate and explore these different systems of knowledge and their intersections. In addition to developing fluencies related to both general botany …


Disease-Associated Mutation A554v Disrupts Normal Autoinhibition Of Dnmt1, Rebecca L. Switzer, Zach J. Hartman, Geoffrey R. Hewett, Clara F. Carroll Jul 2023

Disease-Associated Mutation A554v Disrupts Normal Autoinhibition Of Dnmt1, Rebecca L. Switzer, Zach J. Hartman, Geoffrey R. Hewett, Clara F. Carroll

Faculty Journal Articles

DNA methyltransferase 1 (DNMT1) is the enzyme primarily responsible for propagation of the methylation pattern in cells. Mutations in DNMT1 have been linked to the development of adult-onset neurodegenerative disorders; these disease-associated mutations occur in the regulatory replication foci-targeting sequence (RFTS) domain of the protein. The RFTS domain is an endogenous inhibitor of DNMT1 activity that binds to the active site and prevents DNA binding. Here, we examine the impact of the disease-associated mutation A554V on normal RFTS-mediated inhibition of DNMT1. Wild-type and mutant proteins were expressed and purified to homogeneity for biochemical characterization. The mutation increased DNA binding affinity …


Morphological Trait Evolution In Solanum (Solanaceae): Evolutionary Lability Of Key Taxonomic Characters, Rebecca Hilgenhof, Edeline Gagnon, Sandra Knapp, Xavier Aubriot, Eric Tepe, Lynn Bohs, Leandro Giacomin, Yuri Gouvea, Andres Orejuela, Christopher T. Martine, Clara Ines Orozco, Iris E. Peralta, Tina Sarkinen Jul 2023

Morphological Trait Evolution In Solanum (Solanaceae): Evolutionary Lability Of Key Taxonomic Characters, Rebecca Hilgenhof, Edeline Gagnon, Sandra Knapp, Xavier Aubriot, Eric Tepe, Lynn Bohs, Leandro Giacomin, Yuri Gouvea, Andres Orejuela, Christopher T. Martine, Clara Ines Orozco, Iris E. Peralta, Tina Sarkinen

Faculty Journal Articles

Solanum is one of the world's largest and economically most important plant genera, including 1245 currently accepted species and several major and minor crops (e.g., tomato, potato, brinjal eggplant, scarlet eggplant, Gboma eggplant, lulo, and pepino). Here we provide an overview of the evolution of 25 key morphological traits for the major and minor clades of this giant genus based on stochastic mapping using a well-sampled recently published phylogeny of Solanum. The most evolutionarily labile traits (showing >100 transitions across the genus) relate to plant structure (growth form and sympodial unit structure), herbivore defence (glandular trichomes), pollination (corolla shape …


Fluidity And Inconstancy: Australian Bush Tomatoes As An Exemplar Of Non-Normative Sex Expression, Christopher T. Martine Jun 2023

Fluidity And Inconstancy: Australian Bush Tomatoes As An Exemplar Of Non-Normative Sex Expression, Christopher T. Martine

Faculty Journal Articles

Solanum, a genus of ~1500 global species, is one of the more interesting plant groups in which to study reproductive biology and ecology. Overwhelmingly, species in this group express full cosexuality, where individual plants have flowers containing both fully-functioning “male” (staminate) and “female” (carpellate) organs. However, there have been multiple and widespread evolutionary transitions within the genus to non-normative variations on this ancestral condition. Australian bush tomatoes (ca. 40 species) are especially diverse in this regard, with uncommon variation and combinations of unisexuality and cosexuality -- including, most notably, two sexual systems known as dioecy (unisexual male or female …


A Foundational Population Genetics Investigation Of The Sexual Systems Of Solanum (Solanaceae) In The Australian Monsoon Tropics Suggests Dioecious Taxa May Benefit From Increased Genetic Admixture Via Obligate Outcrossing, Jason T. Cantley, Ingrid E. Jordon-Thaden, Morgan Roche, Daniel S. Hayes, Stephamie Kate, Christopher T. Martine May 2023

A Foundational Population Genetics Investigation Of The Sexual Systems Of Solanum (Solanaceae) In The Australian Monsoon Tropics Suggests Dioecious Taxa May Benefit From Increased Genetic Admixture Via Obligate Outcrossing, Jason T. Cantley, Ingrid E. Jordon-Thaden, Morgan Roche, Daniel S. Hayes, Stephamie Kate, Christopher T. Martine

Faculty Journal Articles

Solanum section Leptostemonum is an ideal lineage to test the theoretical framework regarding proposed evolutionary benefits of outcrossing sexual systems in comparison to cosexuality. Theoretically, non-cosexual taxa should support more genetic diversity within populations, experience less inbreeding, and have less genetic structure due to a restricted ability to self-fertilize. However, many confounding factors present challenges for a confident inference that inherent differences in sexual systems influence observed genetic patterns among populations. This study provides a foundational baseline of the population genetics of several species of different sexual systems with the aim of generating hypotheses of any factor—including sexual system—that influences …


Nuclear Phylogeny And Insights Into Whole-Genome Duplications And Reproductive Development Of Solanaceae Plants, Jie Wang, Weibin Xu, Junwen Zhai, Yi Hu, Jing Guo, Caifei Zhang, Yiyong Zhao, Lin Zhang, Christopher T. Martine, Hong Ma, Chien-Hsun Huang Jan 2023

Nuclear Phylogeny And Insights Into Whole-Genome Duplications And Reproductive Development Of Solanaceae Plants, Jie Wang, Weibin Xu, Junwen Zhai, Yi Hu, Jing Guo, Caifei Zhang, Yiyong Zhao, Lin Zhang, Christopher T. Martine, Hong Ma, Chien-Hsun Huang

Faculty Journal Articles

Solanaceae, the nightshade family, have ∼2700 species, including the important crops potato and tomato, ornamentals, and medicinal plants. Several sequenced Solanaceae genomes show evidence for whole-genome duplication (WGD), providing an excellent opportunity to investigate WGD and its impacts. Here, we generated 93 transcriptomes/genomes and combined them with 87 public datasets, for a total of 180 Solanaceae species representing all four subfamilies and 14 of 15 tribes. Nearly 1700 nuclear genes from these transcriptomic/genomic datasets were used to reconstruct a highly resolved Solanaceae phylogenetic tree with six major clades. The Solanaceae tree supports four previously recognized subfamilies (Goetzeioideae, Cestroideae, Nicotianoideae, …


Continuous Fluorescence-Based Endonuclease-Coupled Dna Methylation Assay To Screen For Dna Methyltransferase Inhibitors, Rebecca Switzer, Katie A. Ward, Jessica Medrano Aug 2022

Continuous Fluorescence-Based Endonuclease-Coupled Dna Methylation Assay To Screen For Dna Methyltransferase Inhibitors, Rebecca Switzer, Katie A. Ward, Jessica Medrano

Faculty Journal Articles

DNA methylation, a form of epigenetic gene regulation, is important for normal cellular function. In cells, proteins called DNA methyltransferases (DNMTs) establish and maintain the DNA methylation pattern. Changes to the normal DNA methylation pattern are linked to cancer development and progression, making DNMTs potential cancer drug targets. Thus, identifying and characterizing novel small molecule inhibitors of these enzymes is of great importance. This paper presents a protocol that can be used to screen for DNA methyltransferase inhibitors. The continuous coupled kinetics assay allows for initial velocities of DNA methylation to be determined in the presence and absence of potential …


Phylogenomic Discordance Suggests Polytomies Along The Backbone Of The Large Genus Solanum, Edeline Gagnon, Rebeccca Hilgenhof, Andrés Orejuela, Angela J. Mcdonnell, Gaurav Sablok, Xavier Aubriot, Leandro Giacomin, Yuri Gouvêa, Thamyris Bragionis, João Renato Stehmann, Lynn Bohs, Steven Dodsworth, Christopher T. Martine, Péter Poczai, Sandra Knapp, Tiina Särkinen Feb 2022

Phylogenomic Discordance Suggests Polytomies Along The Backbone Of The Large Genus Solanum, Edeline Gagnon, Rebeccca Hilgenhof, Andrés Orejuela, Angela J. Mcdonnell, Gaurav Sablok, Xavier Aubriot, Leandro Giacomin, Yuri Gouvêa, Thamyris Bragionis, João Renato Stehmann, Lynn Bohs, Steven Dodsworth, Christopher T. Martine, Péter Poczai, Sandra Knapp, Tiina Särkinen

Faculty Journal Articles

Premise of the study

Evolutionary studies require solid phylogenetic frameworks, but increased volumes of phylogenomic data have revealed incongruent topologies among gene trees in many organisms both between and within genomes. Some of these incongruences indicate polytomies that may remain impossible to resolve. Here we investigate the degree of gene-tree discordance in Solanum, one of the largest flowering plant genera that includes the cultivated potato, tomato, and eggplant, as well as 24 minor crop plants.

Methods

A densely sampled species-level phylogeny of Solanum is built using unpublished and publicly available Sanger sequences comprising 60% of all accepted species (742 spp.) …


The Effects Of Road Salt (Nacl), Predation, And Competition On The Growth And Community Interactions Of Spotted Salamanders (Ambystoma Maculatum) And Wood Frogs (Lithobates Sylvaticus), Melissa Ocampo, Catherine A. Chuirazzi, Mizuki Takahashi Jan 2022

The Effects Of Road Salt (Nacl), Predation, And Competition On The Growth And Community Interactions Of Spotted Salamanders (Ambystoma Maculatum) And Wood Frogs (Lithobates Sylvaticus), Melissa Ocampo, Catherine A. Chuirazzi, Mizuki Takahashi

Faculty Journal Articles

Road deicing salts are frequently used in northern regions of the world during the winter and early spring months. As a result, a significant portion of road runoff into surrounding aquatic habitats contains road deicing salts. Previous studies found road salt contaminations in vernal pools that pond-breeding amphibians commonly use, including spotted salamanders (Ambystoma maculatum) and wood frogs (Lithobates sylvaticus). Studies have examined the impact of road salt on both amphibian species, but to our knowledge no previous studies have examined how road salt impacts the interspecific competition between both amphibians. We hypothesized that road salt would negatively impact growth …


Parasite Of The Month. Hepatocystis, Imran Ejotre, Deeann Reeder, Kai Matuschewski, Juliane Schaer May 2021

Parasite Of The Month. Hepatocystis, Imran Ejotre, Deeann Reeder, Kai Matuschewski, Juliane Schaer

Faculty Journal Articles

No abstract provided.


Investigation Into The Genetic Provenance Of Three Rare Plants With East-West Disjunction Patterns In Pennsylvania., Scott Schuette, Christopher T. Martine Jan 2021

Investigation Into The Genetic Provenance Of Three Rare Plants With East-West Disjunction Patterns In Pennsylvania., Scott Schuette, Christopher T. Martine

Other Faculty Research and Publications

Rare plant conservation relies on an understanding of the natural history, biology and ecology, and real and potential threats to their populations to inform state regulations that serve to protect the species from extirpation. This work often involves extensive field surveys over several years to determine population sizes and whether those populations are seeing reductions in number of individuals necessary to maintain the genetic diversity within and between those populations. Species and populations with high genetic diversity are better equipped to withstand sudden changes to their habitats that derive from land use changes and changing climate. There are a variety …


Religious Naturalisms, Carol W. White Jan 2021

Religious Naturalisms, Carol W. White

Other Faculty Research and Publications

This article focuses on recent developments in religious naturalism in the twenty-first century, building on Jerome Stone’s 2008 study of its resurgence in the mid-twentieth century. I introduce religious naturalism as a synthesis of naturalistic ideas that often depart from traditional forms of religious thinking, defining it as a capacious, ecological religious worldview grounded in the observational conviction that nature is ultimate. I also describe different models of religious naturalism, focusing on the key ideas found in the influential publications of contemporary religious naturalists (e.g., Ursula Goodenough, Donald Crosby, Loyal Rue, among others). While acknowledging specific points of emphasis, I …


Lepidopteran Granivory Reduces Seed Counts In A Rare Species Of Riparian Scour Prairies, Cheyenne Moore, Angela J. Mcdonnell, Scott Schuette, Christopher T. Martine Jan 2021

Lepidopteran Granivory Reduces Seed Counts In A Rare Species Of Riparian Scour Prairies, Cheyenne Moore, Angela J. Mcdonnell, Scott Schuette, Christopher T. Martine

Faculty Journal Articles

In Pennsylvania Baptisia australis var. australis is found along only four waterways: the Allegheny River, Youghiogheny River, Clarion River, and Red Bank Creek. Because of its limited distribution and small number of extant populations, the species is considered state-threatened in Pennsylvania. In addition, the riparian prairie habitat that Pennsylvania Baptisia australis var. australis is restricted to is also in decline and considered vulnerable. Because of these conservation concerns, insights into the natural history of the taxon in the state is valuable and will inform conservation efforts. Field surveys and fruit collections along the Allegheny River and herbarium collections were used …


The Effects Of Food Supply On Reproductive Hormones And Timing Of Reproduction In An Income-Breeding Seabird, Shannon Whelan, Scott A. Hatch, Z. Morgan Benowitz-Fredericks, Charline Parenteau, Olivier Chastel, Kyle Elliott Jan 2021

The Effects Of Food Supply On Reproductive Hormones And Timing Of Reproduction In An Income-Breeding Seabird, Shannon Whelan, Scott A. Hatch, Z. Morgan Benowitz-Fredericks, Charline Parenteau, Olivier Chastel, Kyle Elliott

Faculty Journal Articles

Current food supply is a major driver of timing of breeding in income-breeding animals, likely because increased net energy balance directly increases reproductive hormones and advances breeding. In capital breeders, increased net energy balance increases energy reserves, which eventually leads to improved reproductive readiness and earlier breeding. To test the hypothesis that phenology of income-breeding birds is independent of energy reserves, we conducted an experiment on food-supplemented (“fed”) and control female black-legged kittiwakes (Rissa tridactyla). We temporarily increased energy costs (via weight handicap) in a 2 × 2 design (fed/unfed; handicapped/unhandicapped) during the pre-laying period and observed movement …


Mapping Specific Mental Content During Musical Imagery, Mor Regev, Andrea R. Halpern, Adrian Owen, Aniruddh Patel, Robert J. Zatorre Jan 2021

Mapping Specific Mental Content During Musical Imagery, Mor Regev, Andrea R. Halpern, Adrian Owen, Aniruddh Patel, Robert J. Zatorre

Faculty Journal Articles

Humans can mentally represent auditory information without an external stimulus, but the specificity of these internal representations remains unclear. Here, we asked how similar the temporally unfolding neural representations of imagined music are compared to those during the original perceived experience. We also tested whether rhythmic motion can influence the neural representation of music during imagery as during perception. Participants first memorized six 1-min-long instrumental musical pieces with high accuracy. Functional MRI data were collected during: 1) silent imagery of melodies to the beat of a visual metronome; 2) same but while tapping to the beat; and 3) passive listening. …


Sylvan Dell Nature Preserve Project, Brian Quinn, Katie Wisotsky, Huthaifa Aladwan May 2020

Sylvan Dell Nature Preserve Project, Brian Quinn, Katie Wisotsky, Huthaifa Aladwan

Sylvan Dell Field Station Student Projects

The Sylvan Dell Nature Preserve and Farm in South Williamsport, PA. Sylvan Dell is a 229 acre plot of farmland that contains a wetland on the south section of the property. It lies just south of the West Branch of the Susquehanna River. The first humans we know of to settle on this land were the Susquehannock and later the Haudenosaunee (Iroquois) Native Americans. In the late 18th century, white settlers took the land away from the Haudenosaunee. In the 20th century, the famous ornithologist Robert Porter Allen was influenced by the broad range of bird species that would visit …


A Basic Ddradseq Two‐Enzyme Protocol Performs Well With Herbarium And Silica‐Dried Tissues Across Four Genera, Ingrid E. Jordon-Thaden, James B. Beck, Catherine A. Rushworth, Michael D. Windham, Nicolas Diaz, Jason T. Cantley, Christopher T. Martine, Carl J. Rothfels Apr 2020

A Basic Ddradseq Two‐Enzyme Protocol Performs Well With Herbarium And Silica‐Dried Tissues Across Four Genera, Ingrid E. Jordon-Thaden, James B. Beck, Catherine A. Rushworth, Michael D. Windham, Nicolas Diaz, Jason T. Cantley, Christopher T. Martine, Carl J. Rothfels

Faculty Journal Articles

Premise

The ability to sequence genome‐scale data from herbarium specimens would allow for the economical development of data sets with broad taxonomic and geographic sampling that would otherwise not be possible. Here, we evaluate the utility of a basic double‐digest restriction site–associated DNA sequencing (ddRADseq) protocol using DNAs from four genera extracted from both silica‐dried and herbarium tissue.

Methods

DNAs from Draba, Boechera, Solidago, and Ilex were processed with a ddRADseq protocol. The effects of DNA degradation, taxon, and specimen age were assessed.

Results

Although taxon, preservation method, and specimen age affected data recovery, large phylogenetically informative …


Genome-Wide Changes In Genetic Diversity In A Population Of Myotis Lucifugus Affected By White-Nose Syndrome, Thomas M. Lilley, Ian W. Wilson, Kenneth A. Field, Deeann Reeder, Megan E. Vodzak, Gregory G. Turner, Allen Kurta, Anna S. Blomberg, Samantha Hoff, Carl J. Herzog, Brent J. Sewall, Steve Paterson Apr 2020

Genome-Wide Changes In Genetic Diversity In A Population Of Myotis Lucifugus Affected By White-Nose Syndrome, Thomas M. Lilley, Ian W. Wilson, Kenneth A. Field, Deeann Reeder, Megan E. Vodzak, Gregory G. Turner, Allen Kurta, Anna S. Blomberg, Samantha Hoff, Carl J. Herzog, Brent J. Sewall, Steve Paterson

Faculty Journal Articles

Novel pathogens can cause massive declines in populations, and even extirpation of hosts. But disease can also act as a selective pressure on survivors, driving the evolution of resistance or tolerance. Bat white-nose syndrome (WNS) is a rapidly spreading wildlife disease in North America. The fungus causing the disease invades skin tissues of hibernating bats, resulting in disruption of hibernation behavior, premature energy depletion, and subsequent death. We used whole-genome sequencing to investigate changes in allele frequencies within a population of Myotis lucifugus in eastern North America to search for genetic resistance to WNS. Our results show low FST values …


Prenatal Aromatase Inhibition Alters Postnatal Immunity In Domestic Chickens (Gallus Gallus), Jeff W. Simkins, Abby E. Joseph, Frances Bonier, Z. Morgan Benowitz-Fredericks Jan 2020

Prenatal Aromatase Inhibition Alters Postnatal Immunity In Domestic Chickens (Gallus Gallus), Jeff W. Simkins, Abby E. Joseph, Frances Bonier, Z. Morgan Benowitz-Fredericks

Faculty Journal Articles

In birds, exposure to exogenous testosterone during embryonic development can suppress measures of immune function; however, it is unclear whether these effects are due to direct or indirect action via aromatization. Estradiol (E2) is synthesized from testosterone by the enzyme aromatase, and this conversion is a necessary step in many signaling pathways that are ostensibly testosterone-dependent. Many lines of evidence in mammals indicate that E2 can affect immune function. We tested the hypothesis that some of the immunomodulatory effects observed in response to in ovo testosterone exposure in birds are mediated by conversion to E2 by aromatase, by using fadrozole …


Temperate Eurasian Origins Of Hawaiian Chenopodium (Amaranthaceae) Plus Description Of A New Species Endemic To Moloka‘I, Jason T. Cantley, Angela J. Mcdonnell, J Branson, S R. Long, W Garnett, Christopher T. Martine Jan 2020

Temperate Eurasian Origins Of Hawaiian Chenopodium (Amaranthaceae) Plus Description Of A New Species Endemic To Moloka‘I, Jason T. Cantley, Angela J. Mcdonnell, J Branson, S R. Long, W Garnett, Christopher T. Martine

Faculty Journal Articles

Chenopodium taxa of Hawai‘i are tetraploids distinguished from other members of the circumglobally distributed genus by minute morphological characters. Because of these reasons, the geographic origin of Hawaiian Chenopodium has remained unclear. Across the Hawaiian Archipelago, Chenopodium taxa are morphologically variable and grow in highly disparate xeric habitats, especially in terms of precipitation, temperature, wind, salt spray, and solar irradiation. Habitats include dry subalpine shrublands, sandy beach strand of atolls in the Northwest Hawaiian Islands, dry forests, and precipitously tall sea cliffs of northwestern Moloka‘i. From the Moloka‘i sea cliffs, which are battered by high energy winds, salt spray, and …


Integrated Pest Management In The Academic Small Greenhouse Setting: A Case Study Using Solanum Spp. (Solanaceae)., Daniel S. Hayes, Ingrid E. Jordon-Thaden, Jason T. Cantley, Angela J. Mcdonnell, Christopher T. Martine Aug 2019

Integrated Pest Management In The Academic Small Greenhouse Setting: A Case Study Using Solanum Spp. (Solanaceae)., Daniel S. Hayes, Ingrid E. Jordon-Thaden, Jason T. Cantley, Angela J. Mcdonnell, Christopher T. Martine

Faculty Journal Articles

Premise

Botanical faculty and staff at academic institutions are often tasked with establishing and/or caring for plant collections held in small greenhouse facilities. Once plants are in place, an especially acute challenge is managing plant pest/pathogen populations. Integrated pest management (IPM) approaches are an excellent option, but few examples exist in the literature of successful programs that have been developed in academic small greenhouse settings.

Methods and Results

Over several years, we developed an IPM program for two small research greenhouses on the campus of a primarily undergraduate institution where hundreds of plants have been grown for studies in the …


Substituted Anthraquinones Represent A Potential Scaffold For Dna Methyltransferase 1-Specific Inhibitors, Rebecca L. Switzer, Jessica Medrano, David A. Reedel, Jill Weiss Jul 2019

Substituted Anthraquinones Represent A Potential Scaffold For Dna Methyltransferase 1-Specific Inhibitors, Rebecca L. Switzer, Jessica Medrano, David A. Reedel, Jill Weiss

Faculty Journal Articles

In humans, the most common epigenetic DNA modification is methylation of the 5-carbon of cytosines, predominantly in CpG dinucleotides. DNA methylation is an important epigenetic mark associated with gene repression. Disruption of the normal DNA methylation pattern is known to play a role in the initiation and progression of many cancers. DNA methyltransferase 1 (DNMT1), the most abundant DNA methyltransferase in humans, is primarily responsible for maintenance of the DNA methylation pattern and is considered an important cancer drug target. Recently, laccaic acid A (LCA), a highly substituted anthraquinone natural product, was identified as a direct, DNA-competitive inhibitor of DNMT1. …


Solanum Plastisexum, An Enigmatic New Bush Tomato From The Australian Monsoon Tropics Exhibiting Breeding System Fluidity., Angela J. Mcdonnell, Heather B. Wetreich, Jason T. Cantley, Peter Jobson, Christopher T. Martine Jun 2019

Solanum Plastisexum, An Enigmatic New Bush Tomato From The Australian Monsoon Tropics Exhibiting Breeding System Fluidity., Angela J. Mcdonnell, Heather B. Wetreich, Jason T. Cantley, Peter Jobson, Christopher T. Martine

Faculty Journal Articles

A bush tomato that has evaded classification by solanologists for decades has been identified and is described as a new species belonging to the Australian “Solanum dioicum group” of the Ord Victoria Plain biogeographic region in the monsoon tropics of the Northern Territory. Although now recognised to be andromonoecious, S. plastisexum Martine & McDonnell, sp. nov. exhibits multiple reproductive phenotypes, with solitary perfect flowers, a few staminate flowers or with cymes composed of a basal hermaphrodite and an extended rachis of several to many staminate flowers. When in fruit, the distal rachis may abcise and drop. A member of …


Phylogeny Of The Australian Solanum Dioicum Group Using Seven Nuclear Genes: Testing Symon’S Fruit And Seed Dispersal Hypotheses., Christopher T. Martine, Ingrid E. Jordon-Thaden, Angela J. Mcdonnell, Jason T. Cantley, Daniel S. Hayes, Morgan D. Roche, Emma S. Frawley, Ian S. Gilman, David C. Tank Apr 2019

Phylogeny Of The Australian Solanum Dioicum Group Using Seven Nuclear Genes: Testing Symon’S Fruit And Seed Dispersal Hypotheses., Christopher T. Martine, Ingrid E. Jordon-Thaden, Angela J. Mcdonnell, Jason T. Cantley, Daniel S. Hayes, Morgan D. Roche, Emma S. Frawley, Ian S. Gilman, David C. Tank

Faculty Journal Articles

The dioecious and andromonoecious Solanum taxa (the “S. dioicum group”) of the Australian Monsoon Tropics have been the subject of phylogenetic and taxonomic study for decades, yet much of their basic biology is still unknown. This is especially true for plant-animal interactions, including the influence of fruit form and calyx morphology on seed dispersal. We combine field/greenhouse observations and specimen-based study with phylogenetic analysis of seven nuclear regions obtained via a microfluidic PCR-based enrichment strategy and high-throughput sequencing, and present the first species-tree hypothesis for the S. dioicum group. Our results suggest that epizoochorous trample burr seed …


Resurrection Of An East African House Bat Species, Scotophilus Altilis (Chiroptera: Vespertilionidae), Peter Vallo, Deeann Reeder, Megan E. Vodzak, Petr Benda Jan 2019

Resurrection Of An East African House Bat Species, Scotophilus Altilis (Chiroptera: Vespertilionidae), Peter Vallo, Deeann Reeder, Megan E. Vodzak, Petr Benda

Faculty Journal Articles

Several house bat specimens superficially resembling the white-bellied house bat Scotophilus leucogaster (Cretzschmar, 1830), were recently captured in southwestern Ethiopia and southern South Sudan. These S. cf. leucogaster differed from typical S. leucogaster by their slightly smaller size and ventral coloration, conforming instead with the original description of S. altilis Allen, 1914. Scotophilus altilis is an overlooked taxon known from the Blue Nile region in Sudan that is currently considered a junior synonym of S. leucogaster. Phylogenetic analysis of mitochondrial cytochrome b gene (cytb) sequences revealed S. cf. leucogaster as a sister clade …


No Evidence That Portion Size Influences Food Consumption In Male Sprague Dawley Rats, Fabien Naniex, Sophie C. Pinder, Megan Y. Summers, Renee M. Rouleau, Eric Robinson, Kevin P. Myers, James E. Mccutcheon Jan 2019

No Evidence That Portion Size Influences Food Consumption In Male Sprague Dawley Rats, Fabien Naniex, Sophie C. Pinder, Megan Y. Summers, Renee M. Rouleau, Eric Robinson, Kevin P. Myers, James E. Mccutcheon

Faculty Journal Articles

In studies of eating behavior that have been conducted in humans, the tendency to consume more when given larger portions of food, known as the portion size effect (PSE), is one of the most robust and widely replicated findings. Despite this, the mechanisms that underpin it are still unknown. In particular, it is unclear whether the PSE arises from higher-order social and cognitive processes that are unique to humans or, instead, reflects more fundamental processes that drive feeding, such as conditioned food-seeking. Importantly, studies in rodents and other animals have yet to show convincing evidence of a PSE. In this …


Pangolins In Global Camera Trap Data: Implications For Ecological Monitoring, Hannah Khwaja, Claire Buchan, Oliver R. Wearn, Laila Bahaa-El-Din, Drew Bantlin, Henry Bernard, Robert Bitariho, Torsten Bohm, Jimmy Borah, Jedediah Brodie, Wanlop Chutipong, Byron Du Preez, Alex Ebang-Mbele, Sarah Edwards, Emilie Fairet, Jackson L. Frechette, Adrian Garside, Luke Gibson, Anthony Giordano, Govindan Veeraswami Gopi, Alys Granados, Sanjay Gubbi, Franziska Harich, Barbara Haurez, Rasnys W. Havmoller, Olga Helmy, Lynne A. Isbell, Kate Jenks, Riddhika Kalle, Anucha Kamjing, Daphawan Khamcha, Cisquet Kiebou-Opepa, Margaret Kinnaird, Caroline Kruger, Anne Laudisoit, Antony Lynam, Suzanne E. Macdonald, John Mathai, Julia Metsio Sienne, Amelia Meier, David Mills, Jayasilan Mohd-Azian, Yoshihiro Nakashima, Helen C. Nash, Dusit Ngoprasert, An Nguyen, Tim O'Brien, David Olson, Christopher Orbell, John Poulsen, Tharmalingam Ramesh, Deeann Reeder, Rafael Reyna, Lindsey N. Rich, Johanna Rode-Margono, Francesco Rovero, Douglas Sheil, Matthew H. Shirley, Ken Stratford, Niti Sukumal, Saranphat Suwanrat, Naruemon Tantipisanuh, Andrew Tilker, Tim Van Berkel, Leanne K. Van Der Weyde, Matthew Varney, Florian Weise, Ingrid Wiesel, Andreas Wilting, Seth T. Wong, Carly Waterman, Daniel W S Challender Jan 2019

Pangolins In Global Camera Trap Data: Implications For Ecological Monitoring, Hannah Khwaja, Claire Buchan, Oliver R. Wearn, Laila Bahaa-El-Din, Drew Bantlin, Henry Bernard, Robert Bitariho, Torsten Bohm, Jimmy Borah, Jedediah Brodie, Wanlop Chutipong, Byron Du Preez, Alex Ebang-Mbele, Sarah Edwards, Emilie Fairet, Jackson L. Frechette, Adrian Garside, Luke Gibson, Anthony Giordano, Govindan Veeraswami Gopi, Alys Granados, Sanjay Gubbi, Franziska Harich, Barbara Haurez, Rasnys W. Havmoller, Olga Helmy, Lynne A. Isbell, Kate Jenks, Riddhika Kalle, Anucha Kamjing, Daphawan Khamcha, Cisquet Kiebou-Opepa, Margaret Kinnaird, Caroline Kruger, Anne Laudisoit, Antony Lynam, Suzanne E. Macdonald, John Mathai, Julia Metsio Sienne, Amelia Meier, David Mills, Jayasilan Mohd-Azian, Yoshihiro Nakashima, Helen C. Nash, Dusit Ngoprasert, An Nguyen, Tim O'Brien, David Olson, Christopher Orbell, John Poulsen, Tharmalingam Ramesh, Deeann Reeder, Rafael Reyna, Lindsey N. Rich, Johanna Rode-Margono, Francesco Rovero, Douglas Sheil, Matthew H. Shirley, Ken Stratford, Niti Sukumal, Saranphat Suwanrat, Naruemon Tantipisanuh, Andrew Tilker, Tim Van Berkel, Leanne K. Van Der Weyde, Matthew Varney, Florian Weise, Ingrid Wiesel, Andreas Wilting, Seth T. Wong, Carly Waterman, Daniel W S Challender

Faculty Journal Articles

Despite being heavily exploited, pangolins (Pholidota: Manidae) have been subject to limited research, resulting in a lack of reliable population estimates and standardised survey methods for the eight extant species. Camera trapping represents a unique opportunity for broad-scale collaborative species monitoring due to its largely non-discriminatory nature, which creates considerable volumes of data on a relatively wide range of species. This has the potential to shed light on the ecology of rare, cryptic and understudied taxa, with implications for conservation decision-making. We undertook a global analysis of available pangolin data from camera trapping studies across their range in Africa and …


A Hybrid Cognitive Architecture With Primal Affect And Physiology, Christopher L. Dancy Jan 2019

A Hybrid Cognitive Architecture With Primal Affect And Physiology, Christopher L. Dancy

Faculty Journal Articles

Though computational cognitive architectures have been used to study several processes associated with human behavior, the study of integration of affect and emotion in these processes has been relatively sparse. Theory from affective science and affective neuroscience can be used to systematically integrate affect into cognitive architectures, particularly in areas where cognitive system behavior is known to be associated with physiological structure and behavior. I introduce a unified theory and model of human behavior that integrates physiology and primal affect with cognitive processes in a cognitive architecture. This new architecture gives a more tractable, mechanistic way to simulate affect-cognition interactions …


Effect Of Torpor On Host Transcriptomic Responses To A Fungal Pathogen In Hibernating Bats, Kenneth A. Field, Brent J. Sewall, Jenni M. Prokkola, Gregory G. Turner, Marianne Gagnon, Thomas M. Lilley, J Paul White, Joseph S. Johnson, Christopher L. Hauer, Deeann M. Reeder Aug 2018

Effect Of Torpor On Host Transcriptomic Responses To A Fungal Pathogen In Hibernating Bats, Kenneth A. Field, Brent J. Sewall, Jenni M. Prokkola, Gregory G. Turner, Marianne Gagnon, Thomas M. Lilley, J Paul White, Joseph S. Johnson, Christopher L. Hauer, Deeann M. Reeder

Faculty Journal Articles

Hibernation, the use of prolonged torpor to depress metabolism, is employed by mammals to conserve resources during extended periods of extreme temperatures and/or resource limitation. Mammalian hibernators arouse to euthermy periodically during torpor for reasons that are not well understood and these arousals may facilitate immune processes. To determine if arousals enable host responses to pathogens, we used dual RNA‐Seq and a paired sampling approach to examine gene expression in a hibernating bat, the little brown myotis (Myotis lucifugus). During torpor, transcript levels differed in only a few genes between uninfected wing tissue and adjacent tissue infected with …