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Articles 1 - 30 of 48
Full-Text Articles in Life Sciences
Virus Discovery In All Three Major Lineages Of Terrestrial Arthropods Highlights The Diversity Of Single-Stranded Dna Viruses Associated With Invertebrates, Karyna Rosario, Kaitlin Mettel, Bayleigh Benner, Ryan Johnson, Catherine Scott, Sohath Yusseff-Vanegas, Christopher Baker, Deby Cassill, Caroline Storer, Arvind Varsani, Mya Breitbart
Virus Discovery In All Three Major Lineages Of Terrestrial Arthropods Highlights The Diversity Of Single-Stranded Dna Viruses Associated With Invertebrates, Karyna Rosario, Kaitlin Mettel, Bayleigh Benner, Ryan Johnson, Catherine Scott, Sohath Yusseff-Vanegas, Christopher Baker, Deby Cassill, Caroline Storer, Arvind Varsani, Mya Breitbart
Marine Science Faculty Publications
Viruses encoding a replication-associated protein (Rep) within a covalently closed, single-stranded (ss)DNA genome are among the smallest viruses known to infect eukaryotic organisms, including economically valuable agricultural crops and livestock. Although circular Rep-encoding ssDNA (CRESS DNA) viruses are a widespread group for which our knowledge is rapidly expanding, biased sampling toward vertebrates and land plants has limited our understanding of their diversity and evolution. Here, we screened terrestrial arthropods for CRESS DNA viruses and report the identification of 44 viral genomes and replicons associated with specimens representing all three major terrestrial arthropod lineages, namely Euchelicerata (spiders), Hexapoda (insects), and Myriapoda …
Editorial: Organic Ligands – A Key Control On Trace Metal Biogeochemistry In The Ocean, Kristen N. Buck, Maeve Lohan, Sylvia Sander, Christel Hassler, Ivanka Pižeta
Editorial: Organic Ligands – A Key Control On Trace Metal Biogeochemistry In The Ocean, Kristen N. Buck, Maeve Lohan, Sylvia Sander, Christel Hassler, Ivanka Pižeta
Marine Science Faculty Publications
No abstract provided.
Reef Calcifiers Are Adapted To Episodic Heat Stress But Vulnerable To Sustained Warming, Marleen Stuhr, Claire E. Reymond, Vera Rieder, Pamela Hallock, Jörg Rahnenführer, Hildegard Westphal, Michal Kucera
Reef Calcifiers Are Adapted To Episodic Heat Stress But Vulnerable To Sustained Warming, Marleen Stuhr, Claire E. Reymond, Vera Rieder, Pamela Hallock, Jörg Rahnenführer, Hildegard Westphal, Michal Kucera
Marine Science Faculty Publications
Shallow marine ecosystems naturally experience fluctuating physicochemical conditions across spatial and temporal scales. Widespread coral-bleaching events, induced by prolonged heat stress, highlight the importance of how the duration and frequency of thermal stress influence the adaptive physiology of photosymbiotic calcifiers. Large benthic foraminifera harboring algal endosymbionts are major tropical carbonate producers and bioindicators of ecosystem health. Like corals, they are sensitive to thermal stress and bleach at temperatures temporarily occurring in their natural habitat and projected to happen more frequently. However, their thermal tolerance has been studied so far only by chronic exposure, so how they respond under more realistic …
Large-Scale Deposition Of Weathered Oil In The Gulf Of Mexico Following A Deep-Water Oil Spill, Isabel Romero, Gerardo Toro-Farmer, Arne R. Diercks, Patrick Schwing, Frank E. Muller-Karger, Steven Murawski, David Hollander
Large-Scale Deposition Of Weathered Oil In The Gulf Of Mexico Following A Deep-Water Oil Spill, Isabel Romero, Gerardo Toro-Farmer, Arne R. Diercks, Patrick Schwing, Frank E. Muller-Karger, Steven Murawski, David Hollander
Marine Science Faculty Publications
The blowout of the Deepwater Horizon (DWH) drilling rig in 2010 released an unprecedented amount of oil at depth (1,500 m) into the Gulf of Mexico (GoM). Sedimentary geochemical data from an extensive area (∼194,000 km2) was used to characterize the amount, chemical signature, distribution, and extent of the DWH oil deposited on the seafloor in 2010–2011 from coastal to deep-sea areas in the GoM. The analysis of numerous hydrocarbon compounds (N = 158) and sediment cores (N = 2,613) suggests that, 1.9 ± 0.9 × 104 metric tons of hydrocarbons (>C9 saturated and aromatic fractions) were deposited in …
Optical Backscattering Measured By Airborne Lidar And Underwater Glider, James H. Churnside, Richard D. Marchbanks, Chad Lembke, Jordon Beckler
Optical Backscattering Measured By Airborne Lidar And Underwater Glider, James H. Churnside, Richard D. Marchbanks, Chad Lembke, Jordon Beckler
Marine Science Faculty Publications
The optical backscattering from particles in the ocean is an important quantity that has been measured by remote sensing techniques and in situ instruments. In this paper, we compare estimates of this quantity from airborne lidar with those from an in situ instrument on an underwater glider. Both of these technologies allow much denser sampling of backscatter profiles than traditional ship surveys. We found a moderate correlation (R = 0.28, p < 10−5), with differences that are partially explained by spatial and temporal sampling mismatches, variability in particle composition, and lidar retrieval errors. The data suggest that there are two …
Krillbase: A Circumpolar Database Of Antarctic Krill And Salp Numerical Densities, 1926–2016, Angus Atkinson, Siemon L. Hill, Evgeny A. Pakhomov, Volker Siegel, Ricardo Anadon, Sanae Chiba, Kendra L. Daly, Rod Downie, Sophie Fielding
Krillbase: A Circumpolar Database Of Antarctic Krill And Salp Numerical Densities, 1926–2016, Angus Atkinson, Siemon L. Hill, Evgeny A. Pakhomov, Volker Siegel, Ricardo Anadon, Sanae Chiba, Kendra L. Daly, Rod Downie, Sophie Fielding
Marine Science Faculty Publications
Antarctic krill (Euphausia superba) and salps are major macroplankton contributors to Southern Ocean food webs and krill are also fished commercially. Managing this fishery sustainably, against a backdrop of rapid regional climate change, requires information on distribution and time trends. Many data on the abundance of both taxa have been obtained from net sampling surveys since 1926, but much of this is stored in national archives, sometimes only in notebooks. In order to make these important data accessible we have collated available abundance data (numerical density, no. m−2 ) of postlarval E. superba and salp individual (multiple …
The Experimental Flow To The Colorado River Delta: Effects On Carbon Mobilization In A Dry Watercourse, Thomas S. Bianchi, David Butman, Peter A. Raymond, Nicholas D. Ward, Rory J. Kates, Karl W. Flessa, Hector Zamora, Ana Arellano, Jorge Ramirez, Eliana Rodriguez
The Experimental Flow To The Colorado River Delta: Effects On Carbon Mobilization In A Dry Watercourse, Thomas S. Bianchi, David Butman, Peter A. Raymond, Nicholas D. Ward, Rory J. Kates, Karl W. Flessa, Hector Zamora, Ana Arellano, Jorge Ramirez, Eliana Rodriguez
Marine Science Faculty Publications
Here we report on the effects of an experimental flood on the carbon cycling dynamics in the dry watercourse of the Colorado River in Mexico. We observed post-flood differences in the degree of decay, age, and concentration of dissolved organic carbon (DOC), as well as dissolved CH4 and CO2 concentrations throughout the study site. Our results indicate that this flooded waterway was a limited source of CH4 and CO2 to the atmosphere during the event and that DOC age increased with time of flooding. Based on our findings, we suggest that the interplay between storage and …
Evaluation Of Filtration And Dna Extraction Methods For Environmental Dna Biodiversity Assessments Across Multiple Trophic Levels, Anni Djurhuus, Jesse Port, Collin Closek, Kevan Yamahara, Ofelia Romero-Maraccini, Kristine Walz, Dawn Goldsmith, Reiko Michisaki, Mya Breitbart, Alexandria Boehm, Francisco Chavez
Evaluation Of Filtration And Dna Extraction Methods For Environmental Dna Biodiversity Assessments Across Multiple Trophic Levels, Anni Djurhuus, Jesse Port, Collin Closek, Kevan Yamahara, Ofelia Romero-Maraccini, Kristine Walz, Dawn Goldsmith, Reiko Michisaki, Mya Breitbart, Alexandria Boehm, Francisco Chavez
Marine Science Faculty Publications
Metabarcoding of marine environmental DNA (eDNA), originating from tissue, cells, or extracellular DNA, offers the opportunity to survey the biological composition of communities across multiple trophic levels from a non-invasive seawater sample. Here we compare results of eDNA metabarcoding of multiple trophic levels from individual seawater samples collected from a kelp forest in Monterey Bay, California in order to establish methods for future cross-trophic level eDNA analysis. Triplicate 1 L water samples were filtered using five different 47 mm diameter membrane filters (PVDF, PES, GFF, PCTE, and NC) and DNA was extracted from triplicates of each filter-type using three widely-used …
Isolation And Characterization Of A Shewanella Phage–Host System From The Gut Of The Tunicate, Ciona Intestinalis, Brittany Leigh, Charlotte Karrer, John P. Cannon, Mya Breitbart, Larry J. Dishaw
Isolation And Characterization Of A Shewanella Phage–Host System From The Gut Of The Tunicate, Ciona Intestinalis, Brittany Leigh, Charlotte Karrer, John P. Cannon, Mya Breitbart, Larry J. Dishaw
Marine Science Faculty Publications
Outnumbering all other biological entities on earth, bacteriophages (phages) play critical roles in structuring microbial communities through bacterial infection and subsequent lysis, as well as through horizontal gene transfer. While numerous studies have examined the effects of phages on free-living bacterial cells, much less is known regarding the role of phage infection in host-associated biofilms, which help to stabilize adherent microbial communities. Here we report the cultivation and characterization of a novel strain of Shewanella fidelis from the gut of the marine tunicate Ciona intestinalis, inducible prophages from the S. fidelis genome, and a strain-specific lytic phage recovered from surrounding …
Virus Taxonomy In The Age Of Metagenomics, Peter Simmonds, Mike Adams, Mária Benkő, Mya Breitbart, J. Rodney Brister, Eric Carstens
Virus Taxonomy In The Age Of Metagenomics, Peter Simmonds, Mike Adams, Mária Benkő, Mya Breitbart, J. Rodney Brister, Eric Carstens
Marine Science Faculty Publications
The number and diversity of viral sequences that are identified in metagenomic data far exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of experts discussed the proposal that, with appropriate quality control, viruses that are known only from metagenomic data can, and should be, incorporated into the official classification scheme of the International Committee on Taxonomy of Viruses (ICTV). Although a taxonomy that is based on metagenomic sequence data alone represents a substantial departure from the traditional reliance on phenotypic properties, the development of a robust framework for sequence-based virus taxonomy is indispensable for the …
Evolving Academic Culture To Meet Societal Needs, Kateryna Wowk, Larry Mckinney, Frank E. Muller-Karger, Russell Moll, Susan Avery, Elva Escobar-Briones, David Yoskowitz, Richard Mclaughlin
Evolving Academic Culture To Meet Societal Needs, Kateryna Wowk, Larry Mckinney, Frank E. Muller-Karger, Russell Moll, Susan Avery, Elva Escobar-Briones, David Yoskowitz, Richard Mclaughlin
Marine Science Faculty Publications
Given today's complex societal challenges, academia should work better with government, industry and others in offering innovative solutions that benefit our society, economy and environment. Researchers across disciplines must work together and with decision-makers to understand how science can have better on-The-ground impacts toward longer-Term, resilient societal outcomes. This includes, for example, by working with end-users in problem formation and throughout research projects to ensure decision-making needs are being met, and by linking physical science to additional fields like economics, risk communication or psychology. However, persistent barriers to collaborating across disciplines and with external decision-makers remain. Despite decades of studies …
Importance Of Lateral Flux And Its Percolation Depth On Organic Carbon Export In Arctic Tundra Soil: Implications From A Soil Leaching Experiment, Xiaowen Zhang, Jack A. Hutchings, Thomas S. Bianchi, Yina Liu, Ana Arellano, Edward A. Schuur
Importance Of Lateral Flux And Its Percolation Depth On Organic Carbon Export In Arctic Tundra Soil: Implications From A Soil Leaching Experiment, Xiaowen Zhang, Jack A. Hutchings, Thomas S. Bianchi, Yina Liu, Ana Arellano, Edward A. Schuur
Marine Science Faculty Publications
Temperature rise in the Arctic is causing deepening of active layers and resulting in the mobilization of deep permafrost dissolved organic matter (DOM). However, the mechanisms of DOM mobilization from Arctic soils, especially upper soil horizons which are drained most frequently through a year, are poorly understood. Here we conducted a short-term leaching experiment on surface and deep organic active layer soils, from the Yukon River basin, to examine the effects of DOM transport on bulk and molecular characteristics. Our data showed a net release of DOM from surface soils equal to an average of 5% of soil carbon. Conversely, …
The Periodic Topography Of Ice Stream Beds: Insights From The Fourier Spectra Of Mega-Scale Glacial Lineations, Matteo Spagnolo, Timothy C. Bartholomaus, Chris D. Clark, Chris R. Stokes, Nigel Atkinson, Julian A. Dowdeswell, Jeremy C. Ely, Alastair G. C. Graham, Kelly A. Hogan, Edward C. King, Robert D. Larter, Stephen J. Livingstone, Hamish D. Pritchard
The Periodic Topography Of Ice Stream Beds: Insights From The Fourier Spectra Of Mega-Scale Glacial Lineations, Matteo Spagnolo, Timothy C. Bartholomaus, Chris D. Clark, Chris R. Stokes, Nigel Atkinson, Julian A. Dowdeswell, Jeremy C. Ely, Alastair G. C. Graham, Kelly A. Hogan, Edward C. King, Robert D. Larter, Stephen J. Livingstone, Hamish D. Pritchard
Marine Science Faculty Publications
Ice stream bed topography contains key evidence for the ways ice streams interact with, and are potentially controlled by, their beds. Here we present the first application of two-dimensional Fourier analysis to 22 marine and terrestrial topographies from 5 regions in Antarctica and Canada, with and without mega-scale glacial lineations (MSGLs). We find that the topography of MSGL-rich ice stream sedimentary beds is characterized by multiple, periodic wavelengths between 300 and 1200 m and amplitudes from decimeters to a few meters. This periodic topography is consistent with the idea that instability is a key element to the formation of MSGL …
Diverse Landscapes Beneath Pine Island Glacier Influence Ice Flow, Robert G. Bingham, David G. Vaughan, Edward C. King, Damon Davies, Stephen L. Cornford, Andrew M. Smith, Robert J. Arthern, Alex M. Brisbourne, Rydt, Jan De Rydt, Alastair G. C. Graham, Matteo Spagnolo, Oliver J. Marsh, David E. Shean
Diverse Landscapes Beneath Pine Island Glacier Influence Ice Flow, Robert G. Bingham, David G. Vaughan, Edward C. King, Damon Davies, Stephen L. Cornford, Andrew M. Smith, Robert J. Arthern, Alex M. Brisbourne, Rydt, Jan De Rydt, Alastair G. C. Graham, Matteo Spagnolo, Oliver J. Marsh, David E. Shean
Marine Science Faculty Publications
The retreating Pine Island Glacier (PIG), West Antarctica, presently contributes ~5–10% of global sea-level rise. PIG’s retreat rate has increased in recent decades with associated thinning migrating upstream into tributaries feeding the main glacier trunk. To project future change requires modelling that includes robust parameterisation of basal traction, the resistance to ice flow at the bed. However, most ice-sheet models estimate basal traction from satellite-derived surface velocity, without a priori knowledge of the key processes from which it is derived, namely friction at the ice-bed interface and form drag, and the resistance to ice flow that arises as ice deforms …
Resemblance Profiles As Clustering Decision Criteria: Estimating Statistical Power, Error, And Correspondence For A Hypothesis Test For Multivariate Structure, Joshua P. Kilborn, David L. Jones, Ernst B. Peebles, David F. Naar
Resemblance Profiles As Clustering Decision Criteria: Estimating Statistical Power, Error, And Correspondence For A Hypothesis Test For Multivariate Structure, Joshua P. Kilborn, David L. Jones, Ernst B. Peebles, David F. Naar
Marine Science Faculty Publications
Clustering data continues to be a highly active area of data analysis, and resemblance profiles are being incorporated into ecological methodologies as a hypothesis testing-based approach to clustering multivariate data. However, these new clustering techniques have not been rigorously tested to determine the performance variability based on the algorithm's assumptions or any underlying data structures. Here, we use simulation studies to estimate the statistical error rates for the hypothesis test for multivariate structure based on dissimilarity profiles (DISPROF). We concurrently tested a widely used algorithm that employs the unweighted pair group method with arithmetic mean (UPGMA) to estimate the proficiency …
Calculating Surface Ocean Pco2 From Biogeochemical Argo Floats Equipped With Ph: An Uncertainty Analysis, N. L. Williams, L. W. Juranek, R. A. Feely, K. S. Johnson, J. L. Sarmiento, L. D. Talley, A. G. Dickson, A. R. Gray, R. Wanninkhof, J. L. Russell, S. C. Riser, Y. Takeshita
Calculating Surface Ocean Pco2 From Biogeochemical Argo Floats Equipped With Ph: An Uncertainty Analysis, N. L. Williams, L. W. Juranek, R. A. Feely, K. S. Johnson, J. L. Sarmiento, L. D. Talley, A. G. Dickson, A. R. Gray, R. Wanninkhof, J. L. Russell, S. C. Riser, Y. Takeshita
Marine Science Faculty Publications
More than 74 biogeochemical profiling floats that measure water column pH, oxygen, nitrate, fluorescence, and backscattering at 10 day intervals have been deployed throughout the Southern Ocean. Calculating the surface ocean partial pressure of carbon dioxide (pCO2sw) from float pH has uncertainty contributions from the pH sensor, the alkalinity estimate, and carbonate system equilibrium constants, resulting in a relative standard uncertainty in pCO2sw of 2.7% (or 11 µatm at pCO2sw of 400 µatm). The calculated pCO2sw from several floats spanning a range of oceanographic regimes are compared to existing climatologies. In some locations, such as the …
Biogeochemical Sensor Performance In The Soccom Profiling Float Array, Kenneth S. Johnson, Joshua N. Plant, Luke J. Coletti, Hans W. Jannasch, Carole M. Sakamoto, Stephen C. Riser, Dana D. Swift, Nancy L. Williams, Emmanuel Boss, Nils Haëntjens, Lynne D. Talley, Jorge L. Sarmiento
Biogeochemical Sensor Performance In The Soccom Profiling Float Array, Kenneth S. Johnson, Joshua N. Plant, Luke J. Coletti, Hans W. Jannasch, Carole M. Sakamoto, Stephen C. Riser, Dana D. Swift, Nancy L. Williams, Emmanuel Boss, Nils Haëntjens, Lynne D. Talley, Jorge L. Sarmiento
Marine Science Faculty Publications
The Southern Ocean Carbon and Climate Observations and Modeling (SOCCOM) program has begun deploying a large array of biogeochemical sensors on profiling floats in the Southern Ocean. As of February 2016, 86 floats have been deployed. Here the focus is on 56 floats with quality-controlled and adjusted data that have been in the water at least 6 months. The floats carry oxygen, nitrate, pH, chlorophyll fluorescence, and optical backscatter sensors. The raw data generated by these sensors can suffer from inaccurate initial calibrations and from sensor drift over time. Procedures to correct the data are defined. The initial accuracy of …
Requirement Of Minimal Signal-To-Noise Ratios Of Ocean Color Sensors And Uncertainties Of Ocean Color Products, Lin Qi, Zhongping Lee, Chuanmin Hu, Menghua Wang
Requirement Of Minimal Signal-To-Noise Ratios Of Ocean Color Sensors And Uncertainties Of Ocean Color Products, Lin Qi, Zhongping Lee, Chuanmin Hu, Menghua Wang
Marine Science Faculty Publications
Using simulations, error propagation theory, and measurements from the Moderate Resolution Imaging Spectroradiometer (MODIS), we determined the minimal signal-to-noise ratio (SNR) required for ocean color measurements and product uncertainties at different spatial and temporal scales. First, based on typical top-of-atmosphere (TOA) radiance over the ocean, we evaluate the uncertainties in satellite-derived Rrs in the visible wavelengths (ΔRrs(vis)) due to sensor noise in both the near-infrared (NIR) and the visible bands. While the former induces noise in Rrs(vis) through atmospheric correction, the latter has a direct impact on Rrs(vis). Such estimated uncertainties are …
Remote Estimation Of Biomass Of Ulva Prolifera Macroalgae In The Yellow Sea, Lianbo Hu, Chuanmin Hu, He Ming-Xia
Remote Estimation Of Biomass Of Ulva Prolifera Macroalgae In The Yellow Sea, Lianbo Hu, Chuanmin Hu, He Ming-Xia
Marine Science Faculty Publications
Since 2008, macroalgal blooms of Ulva prolifera (also called green tides) occurred every summer in the Yellow Sea (YS), causing environmental and economic problems. A number of studies have used satellite observations to estimate the severity of the blooms through estimating the bloom size and duration. However, a critical bloom parameter, namely biomass, has never been objectively determined due to lack of measurements. In this study, laboratory experiments were conducted to measure U. prolifera biomass (wet weight) per unit area and the corresponding spectral reflectance, through which a robust relationship has been established to link biomass per area to …
Land Adjacency Effects On Modis Aqua Top-Of-Atmosphere Radiance In The Shortwave Infrared: Statistical Assessment And Correction, Lian Feng, Chuanmin Hu
Land Adjacency Effects On Modis Aqua Top-Of-Atmosphere Radiance In The Shortwave Infrared: Statistical Assessment And Correction, Lian Feng, Chuanmin Hu
Marine Science Faculty Publications
Satellite measurements of coastal or inland waters near land/water interfaces suffer from land adjacency effects (LAEs), particularly in the short-wave infrared (SWIR) wavelengths. Here a statistical method was developed to quantify the LAEs as the ratio of top-of-atmosphere (TOA) total radiance (Lt, W m−2 µm−1 sr−1) between near-shore pixels and LAE-free offshore pixels (>12 pixels away from land). The calculations were conducted using MODIS Aqua images between 2003 and 2012 over the Madagascar Island, with results showing the dependency of LAEs on different environmental and observational factors. The LAEs decrease dramatically with increasing …
Local And Regional Stressors Interact To Drive A Salinization-Induced Outbreak Of Predators On Oyster Reefs, David L. Kimbro, J. Wilson White, Hanna Tillotson, Nikkie Cox, Megan Christopher, Owen Stokes-Cawley, Samantha Yuan, Timothy J. Pusack, Christopher D. Stallings
Local And Regional Stressors Interact To Drive A Salinization-Induced Outbreak Of Predators On Oyster Reefs, David L. Kimbro, J. Wilson White, Hanna Tillotson, Nikkie Cox, Megan Christopher, Owen Stokes-Cawley, Samantha Yuan, Timothy J. Pusack, Christopher D. Stallings
Marine Science Faculty Publications
Predator outbreaks are predicted to increasingly decimate economically and ecologically important prey populations because global climate change and food-web modifications frequently facilitate predators and stress prey. Natural systems are organized hierarchically, with processes operating at multiple scales giving rise to patterns of biodiversity, so predicting and managing outbreaks requires a framework that accounts for the effects of both local and regional stressors. Here, we used the comparative experimental approach to investigate whether the collapse of a nationally important oyster fishery in the Gulf of Mexico (Apalachicola Bay, Florida) could have been (1) caused proximally by a predator outbreak and (2) …
Genome Sequence Of Euphorbia Mosaic Virus From Passionfruit And Euphorbia Heterophylla In Florida, J. E. Polston, M. A. Londoño, A. L. Cohen, M. Padilla-Rodriguez, K. Rosario, Mya Breitbart
Genome Sequence Of Euphorbia Mosaic Virus From Passionfruit And Euphorbia Heterophylla In Florida, J. E. Polston, M. A. Londoño, A. L. Cohen, M. Padilla-Rodriguez, K. Rosario, Mya Breitbart
Marine Science Faculty Publications
Euphorbia mosaic virus (EuMV) was found in a symptomatic passionfruit (Passiflora edulis) plant from Homestead, Florida, USA, as well as in the symptomatic weed Euphorbia heterophylla. This is the first identification of EuMV in Florida and the United States and the first report of a natural infection of passionfruit by EuMV.
Carbon Regeneration In The Cariaco Basin, Venezuela, Arístides Marquez, Andrew Dale, Luis Troccoli Ghinaglia, Fabiola López Monroy, William Senior, Aida Ríos, Frank Muller Karger, Yrene Astor, Ramón Varela
Carbon Regeneration In The Cariaco Basin, Venezuela, Arístides Marquez, Andrew Dale, Luis Troccoli Ghinaglia, Fabiola López Monroy, William Senior, Aida Ríos, Frank Muller Karger, Yrene Astor, Ramón Varela
Marine Science Faculty Publications
The carbon regeneration in the water column of the Cariaco Basin (Venezuela) was investigated using a regression model of total alkalinity (TA) and the concentration of total inorganic carbon (TCO2). Primary productivity (PP) was determined from the inorganic carbon fraction assimilated by phytoplankton and the variation of the 22 and 23ºC isotherm was used as an indicator of coastal upwelling. The results indicate that CO2 levels were lowest (1962 µmol/kg) at the surface and increased to 2451 µmol/kg below the oxic-anoxic redox interface. The vertical regeneration distribution of carbon was dominated (82%) by organic carbon originating from …
Parasite Microbiome Project: Systematic Investigation Of Microbiome Dynamics Within And Across Parasite-Host Interactions, Nolwenn M. Dheilly, Daniel Bolnick, Seth Bordenstein, Paul J. Brindley, Cédric Figuères, Edward C. Holmes, Joaquín Martínez Martínez, Anna J. Phillips, Robert Poulin, Karyna Rosario
Parasite Microbiome Project: Systematic Investigation Of Microbiome Dynamics Within And Across Parasite-Host Interactions, Nolwenn M. Dheilly, Daniel Bolnick, Seth Bordenstein, Paul J. Brindley, Cédric Figuères, Edward C. Holmes, Joaquín Martínez Martínez, Anna J. Phillips, Robert Poulin, Karyna Rosario
Marine Science Faculty Publications
Understanding how microbiomes affect host resistance, parasite virulence, and parasite-associated diseases requires a collaborative effort between parasitologists, microbial ecologists, virologists, and immunologists. We hereby propose the Parasite Microbiome Project to bring together researchers with complementary expertise and to study the role of microbes in host-parasite interactions. Data from the Parasite Microbiome Project will help identify the mechanisms driving microbiome variation in parasites and infected hosts and how that variation is associated with the ecology and evolution of parasites and their disease outcomes. This is a call to arms to prevent fragmented research endeavors, encourage best practices in experimental approaches, and …
High-Resolution Sub-Ice-Shelf Seafloor Records Of Twentieth Century Ungrounding And Retreat Of Pine Island Glacier, West Antarctica, D. Davies, R. G. Bingham, A. G. C. Graham, M. Spagnolo, P. Dutrieux, D. G. Vaughan, A. Jenkins, F. O. Nitsche
High-Resolution Sub-Ice-Shelf Seafloor Records Of Twentieth Century Ungrounding And Retreat Of Pine Island Glacier, West Antarctica, D. Davies, R. G. Bingham, A. G. C. Graham, M. Spagnolo, P. Dutrieux, D. G. Vaughan, A. Jenkins, F. O. Nitsche
Marine Science Faculty Publications
Pine Island Glacier Ice Shelf (PIGIS) has been thinning rapidly over recent decades, resulting in a progressive drawdown of the inland ice and an upstream migration of the grounding line. The resultant ice loss from Pine Island Glacier (PIG) and its neighboring ice streams presently contributes an estimated ∼10% to global sea level rise, motivating efforts to constrain better the rate of future ice retreat. One route toward gaining a better understanding of the processes required to underpin physically based projections is provided by examining assemblages of landforms and sediment exposed over recent decades by the ongoing ungrounding of PIG. …
Spatial Variability Of Spanish Sardine (Sardinella Aurita) Abundance As Related To The Upwelling Cycle Off The Southeastern Caribbean Sea, Digna Rueda-Roa, Jeremy Mendoza, Frank E. Muller-Karger, Juan José Cárdenas, Alina Achury, Yrene Astor
Spatial Variability Of Spanish Sardine (Sardinella Aurita) Abundance As Related To The Upwelling Cycle Off The Southeastern Caribbean Sea, Digna Rueda-Roa, Jeremy Mendoza, Frank E. Muller-Karger, Juan José Cárdenas, Alina Achury, Yrene Astor
Marine Science Faculty Publications
The Sardinella aurita fishery off northeastern Venezuela, region of seasonal wind-driven coastal-upwelling, accounts for 90% of the Caribbean Sea small pelagic catch. This law-protected artisanal fishery takes place up to ∼10 km offshore. The spatial distribution, number of schools, and biomass of S. aurita were studied using eight hydro-acoustic surveys (1995-1998). The study included the analysis of satellite-derived sea surface temperature and chlorophyll-a. Surveys were grouped by strong, weak, and transitional upwelling seasons. Relationships between these observations were analyzed using Generalized Additive Models. Results show that during the primary upwelling season (January-May) sardines were widely distributed in upwelling plumes that …
Ice Formation And The Risk Of Chloride Toxicity In Shallow Wetlands And Lakes, Hilary A. Dugan, Greta Helmueller, John J. Magnuson
Ice Formation And The Risk Of Chloride Toxicity In Shallow Wetlands And Lakes, Hilary A. Dugan, Greta Helmueller, John J. Magnuson
Marine Science Faculty Publications
The process of ice formation in shallow waterbodies can increase chloride to toxic levels in waterbodies already impacted by chloride loading from road salt (NaCl deicer) application. Chloride concentrations were measured bi-weekly in a shallow, urban wetland in Madison, Wisconsin. We found that in this shallow waterbody, ice thickening doubled chloride concentrations from ion exclusion as the water froze. To understand the role of ice formation and ion exclusion, we constructed a numerical model to predict chloride concentrations beneath the ice resulting from ion exclusion. Where chloride levels already are elevated above background and flushing rates are low, ice thickening …
Interpreting The Role Of Ph On Stable Isotopes In Large Benthic Foraminifera, L. L. Robbins, P. O. Knorr, J. G. Wynn, Pamela Hallock, P. J. Harries
Interpreting The Role Of Ph On Stable Isotopes In Large Benthic Foraminifera, L. L. Robbins, P. O. Knorr, J. G. Wynn, Pamela Hallock, P. J. Harries
Marine Science Faculty Publications
Large benthic foraminifera (LBF) are prolific producers of calcium carbonate sediments in shallow, tropical environments that are being influenced by ocean acidification (OA). Two LBF species, Amphistegina gibbosa (Order Rotaliida) with low-Mg calcite tests and Archaias angulatus (Order Miliolida) with high-Mg calcite tests, were studied to assess the effects of pH 7.6 on oxygen and carbon isotopic fractionation between test calcite and ambient seawater. The δ 18O and δ 13C values of terminal chambers and of whole adult tests of both species after 6 weeks were not significantly different between pH treatments of 8.0 and 7.6. However, tests of juveniles …
Stable And Radiocarbon Isotopic Composition Of Dissolved Organic Matter In The Gulf Of Mexico, B. D. Walker, E. R. M. Druffel, J. Kolasinski, B. J. Roberts, X. Xu, B. E. Rosenheim
Stable And Radiocarbon Isotopic Composition Of Dissolved Organic Matter In The Gulf Of Mexico, B. D. Walker, E. R. M. Druffel, J. Kolasinski, B. J. Roberts, X. Xu, B. E. Rosenheim
Marine Science Faculty Publications
Dissolved organic carbon (DOC) is of primary importance to marine ecosystems and the global carbon cycle. Stable carbon (δ13C) and radiocarbon (Δ14C) isotopic measurements are powerful tools for evaluating DOC sources and cycling. However, the isotopic signature of DOC in the Gulf of Mexico (GOM) remains almost completely unknown. Here we present the first DOC Δ14C and δ13C depth profiles from the GOM. Our results suggest the Mississippi River exports large amounts of DOC with an anthropogenic “bomb” Δ14C signature. Riverine DOC is removed and recycled offshore, and some marine …
Satellite Observation Of Particulate Organic Carbon Dynamics On The Louisiana Continental Shelf, Chengfeng Le, John C. Lehrter, Chuanmin Hu, Hugh Macintyre, Marcus W. Beck
Satellite Observation Of Particulate Organic Carbon Dynamics On The Louisiana Continental Shelf, Chengfeng Le, John C. Lehrter, Chuanmin Hu, Hugh Macintyre, Marcus W. Beck
Marine Science Faculty Publications
Particulate organic carbon (POC) plays an important role in coastal carbon cycling and the formation of hypoxia. Yet, coastal POC dynamics are often poorly understood due to a lack of long-term POC observations and the complexity of coastal hydrodynamic and biogeochemical processes that influence POC sources and sinks. Using field observations and satellite ocean color products, we developed a new multiple regression algorithm to estimate POC on the Louisiana Continental Shelf (LCS) from satellite observations. The algorithm had reliable performance with mean relative error (MRE) of ∼40% and root mean square error (RMSE) of ∼50% for MODIS and SeaWiFS images …