Life Sciences Commons^™

Quantifying The Adaptive Cycle, David G. Angeler, Craig R. Allen, Ahjond S. Garmestani, Lance H. Gunderson, Olle Hjerne, Monika Winder

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

The adaptive cycle was proposed as a conceptual model to portray patterns of change in complex systems. Despite the model having potential for elucidating change across systems, it has been used mainly as a metaphor, describing system dynamics qualitatively. We use a quantitative approach for testing premises (reorganisation, conservatism, adaptation) in the adaptive cycle, using Baltic Sea phytoplankton communities as an example of such complex system dynamics. Phytoplankton organizes in recurring spring and summer blooms, a well-established paradigm in planktology and succession theory, with characteristic temporal trajectories during blooms that may be consistent with adaptive cycle phases. We used long-term …

U.S. Drought Monitor, December 22, 2015, Richard R. Heim Jr.

United States Agricultural Commodities in Drought Archive

Drought map of U.S. for December 22, 2015 (12/22/15) plus: U.S. crop areas experiencing drought (map), Approximate percentage of crop located in drought, by state (bar graph), Percent of crop area located in drought, past 52 weeks (line graph) for: Corn, Soybeans, Hay, Cattle, Winter wheat.

Rnai-Mediated Control Of Aflatoxins In Peanut: Method To Analyze Mycotoxin Production And Transgene Expression In The Peanut/Aspergillus Pathosystem, Renee S. Arias, Phat M. Dang, Victor S. Sobolev

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

The Food and Agriculture Organization of the United Nations estimates that 25% of the food crops in the world are contaminated with aflatoxins. That represents 100 million tons of food being destroyed or diverted to non-human consumption each year. Aflatoxins are powerful carcinogens normally accumulated by the fungi Aspergillus flavus and A. parasiticus in cereals, nuts, root crops and other agricultural products. Silencing of five aflatoxin-synthesis genes by RNA interference (RNAi) in peanut plants was used to control aflatoxin accumulation following inoculation with A. flavus. Previously, no method existed to analyze the effectiveness of RNAi in individual peanut transgenic events, …

The Status Of Fishes In The Missouri River, Nebraska: Selected Ancient Fishes, Kirk D. Steffensen

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Several ancient fish species have inhabited the Missouri River and its tributaries for thousands of years prior to major mainstem modifications and fragmentation. However post-anthropogenic modifications, populations of these ancient fish species have been highly diminished. Therefore, the objective of this study was to use historic and current ichthyological records to determine the past and present status for Chestnut Lamprey Ichthyomyzon castaneus, Silver Lamprey Ichthyomyzon unicuspis, Bowfin Amia calva, American Eel Anguilla rostrata, and Burbot Lota lota. Currently, these species are rarely captured and perhaps extirpated from Nebraska waters.

A Desert In Disguise: The Resilience Of The Nebraska Sandhills, Jeff Hartman

School of Natural Resources: Dissertations, Theses, and Student Research

The Nebraska Sandhills are the largest sand dune system in the Western Hemisphere, and are unique because they remain relatively undisturbed from row crop agriculture. Research in the past two decades demonstrated that the Sandhills are dynamic on millennial timescales, switching between stabilized, vegetated states to non-vegetated, mobilized states. The Sandhills are currently stabilized, but understanding how ecological processes are altered as sand dunes transition from stabilized to mobilized states, provides insight into the thresholds, stability, and resilience of this grassland ecosystem. My research investigated the impacts of vegetation disturbances on ecological processes and the sand dune surface stability. For …

Extension Agriculture And Natural Resources In The U.S. Midwest: A Review And Analysis Of Challenges And Future Opportunities, Mahdi M. Al-Kaisi, Roger Wesley Elmore, Gerald A. Miller, David Kwaw-Mensah

Department of Agronomy and Horticulture: Faculty Publications

This review addresses key changes in U.S. agricultural extension and future opportunities. Agricultural extension has been a part of the land-grant university (LGU) system for more than 100 years. The Morrill Act of 1862 established the LGU system by authorizing states access to federally controlled land and funding for public institutions offering educational opportunities focusing on agriculture and mechanical arts for farmers and the working class. Current surveys in Iowa reveal changing trends in extension: more than 90% of farmers identified private-sector crop advisers as their primary source for recommendations, whereas more than 80% of those advisors identified Iowa State …

Onciderini Thomson, 1860 (Coleoptera: Cerambycidae: Lamiinae) Types Of The Muséum National D’Histoire Naturelle (Mnhn), With A Brief History Of The Coleoptera Collection, Eugenio H. Nearns, Gérard L. Tavakilian

Insecta Mundi

The primary types of Onciderini Thomson, 1860 of the Muséum national d’Histoire naturelle (MNHN), Paris, are catalogued and illustrated. Data on the original combination, current name, gender, and type locality are verifi ed and presented. There are 139 primary types of Onciderini including 38 in Oncideres Lacordaire, 1830; 17 in Hypsioma Audinet-Serville, 1835; 10 in Hesycha Fairmaire and Germain, 1859; nine in Hypselomus Perty, 1832; and eight each in Eudesmus Audinet-Serville, 1835 and Trestonia Buquet, 1859. Of the 139 primary types, 71 were described by J. Thomson, 34 by H. W. Bates, 13 by the authors of this work, and …

Affordable Care Act 2016 Changes, Marilyn Schlake

Cornhusker Economics

Since enacted in 2010, the Affordable Care Act (ACA) has in some capacity affected nearly all individuals and businesses throughout the United States. With its sweeping legislation, insurance companies, health providers, employers and individuals alike have changed how they operate within the health industry. These changes will continue as more ACA regulations go into effect in 2016 and 2017. Understanding how these changes affect you and your family and business is important to successfully navigate through the evolving ACA regulations.

U.S. Drought Monitor, December 15, 2015, Richard Tinker

United States Agricultural Commodities in Drought Archive

Drought map of U.S. for December 15, 2015 (12/15/15) plus: U.S. crop areas experiencing drought (map), Approximate percentage of crop located in drought, by state (bar graph), Percent of crop area located in drought, past 52 weeks (line graph) for: Corn, Soybeans, Hay, Cattle, Winter wheat.

Longevity Of Mineral Supplements Within The Soil And Associated Use By White-Tailed Deer, Brian C. Peterson, Keith D. Koupal, Andrew K. Schissel, Cody M. Siegel

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Humans have baited wildlife such as white-tailed deer (Odocoileus virginianus) for generations with the primary purpose of increasing hunting harvest success. Baiting regulation changes are often considered by state management agencies as they pertain to hunting opportunity, fair chase, and disease risk. Cervids require a variety of minerals to supplement biological processes, especially sodium (Na), calcium (Ca), and phosphorus (P). We developed artificial mineral supplement sites set in front of trail cameras to monitor deer use. Pooled soil samples were collected at mineral sites and compared to the surrounding area to determine the longevity of elevated minerals levels …

Soil Moisture Affects Growing-Season Wildfire Size In The Southern Great Plains, Erik S. Krueger, Tyson E. Ochsner, David M. Engle, J. D. Carlson, Dirac L. Twidwell, Samuel D. Fuhlendorf

Department of Agronomy and Horticulture: Faculty Publications

The increasing availability of soil moisture data presents an opportunity for its use in wildfire danger assessments, but research regarding the influence of soil moisture on wildfires is scarce. Our objective was to identify relationships between soil moisture and wildfire size for Oklahoma wildfires during the growing (May-October) and dormant seasons (November-April). We hypothesized that soil moisture influences wildfire size when vegetation is growing but is less important when most vegetation is dead or dormant. Soil moisture, as fraction of available water capacity (FAW), and commonly measured weather variables were determined for 38,419 wildfires from 2000–2012. Wildfires were grouped by …

Soybean Yield And Nodulation Response To Crop History And Inoculation, Stephen Mason, Tomie Galusha, Zaher Kmail

Department of Agronomy and Horticulture: Faculty Publications

Soybean [Glycine max (L.) Merr.] inoculation was imposed on a long-term continuous grain sorghum [Sorghum bicolor (L.) Moench] and soybean cropping systems study with and without manure application at Mead, NE. The objective was to determine the influence of 28-yr history of continuous grain sorghum and soybean production, inoculation, and manure on soybean yield and nodulation. Average 2-yr soybean grain yield was 0.5 Mg ha^–1 greater on plots with continuous grain sorghum crop history rather than soybean history, even after this history was broken by 2-yr crop rotation with grain sorghum in the 2 yr previous to …

Mobile Broadband In Nebraska, Charlotte Narjes, Becky Vogt, Cullen Robbins

Cornhusker Economics

Mobile Broadband Coverage in Nebraska

• Is mobile broadband coverage available throughout Nebraska?
• Is there a difference between rural and urban areas with respect to mobile wireless speed?
• Should mobile wireless coverage be classified as broadband?

These are some of the questions that were answered by an August 2015 Nebraska Public Service Commission (PSC) report. The study, which began in October 2013, was part of the Nebraska Broadband Initiative efforts to facilitate the integration of broadband and information technology into state and local economics.

Evaluation Of Genetic Gain For Dynamic Leaf Traits In Maize Using Field Spectroscopy, Jonathan Luetchens

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Rapid introduction of cheap and precise genotyping technology has created a void between genotypes and phenotypes in maize breeding. While detailed genetic information is easily accessible, the data are lacking robust phenotypes to be used in mapping studies like genome-wide association. As a result, high-throughput phenotyping tools are necessary to rigorously characterize specific traits. In this study, agronomic traits and an active spectrometer system were used to monitor 36 era hybrids – popular commercial maize hybrids grown from 1936 to 2012 – to discover how various traits have changed over time. In conjunction with increased grain yield of 76 kg/ha …

Reactive Oxygen Species Homeostasis And Proline Catabolism, Lu Zhang

Department of Biochemistry: Dissertations, Theses, and Student Research

The role of proline metabolism in regulating cellular redox status was first proposed three decades ago. Proline catabolism was then later found to induce programmed cell death and cell apoptosis by regulating ROS signaling. Proline oxidation was also found to promote cell survival under oxidative stress. Proline catabolism-mediated reactive oxygen species (ROS) were suggested to be involved in both cases by serving as a regulatory signal. In this work, the sources of proline oxidation-induced ROS production were explored in both bacteria and animal cells. Proline oxidation-induced ROS was found to be shared by bacteria (Escherichia coli) and animals …

Expansion Of The Chlorovirus Genus By Studies On Virus Natural History And Chlorella Host Metabolism, Cristian F. Quispe

School of Biological Sciences: Dissertations, Theses, and Student Research

Inland waters cover about 2.5 percent of our planet and harbor huge numbers of known and unknown microorganisms including viruses. Viruses likely play dynamic, albeit largely undocumented roles in regulating microbial communities and in recycling nutrients in the ecosystem. Phycodnaviruses are a genetically diverse, yet morphologically similar, group of large dsDNA-containing viruses (160- to 560-kb) that inhabit aquatic environments. Members of the genus Chlorovirus are common in freshwater. They replicate in eukaryotic, single-celled, chlorella-like green algae that normally exist as endosymbionts of protists in nature. Very little is known about the natural history of the chloroviruses and how they achieve …

Comparative Study Of The D-Values Of Salmonella Spp. And Enterococcus Faecium In Wheat Flour, Didier Dodier

Department of Food Science and Technology: Dissertations, Theses, and Student Research

Low-moisture foods contaminated with Salmonella spp. have been implicated in several foodborne illness outbreaks in the United States. The food industry has to incorporate preventive control in their process and validate thermal processes to assure food safety. The thermal destruction of Enterococcus faecium ATTC 8459 and Salmonella spp. was determined at 3 water activity levels (0.11, 0.18 and 0.33) at 80ºC, 85ºC and 90ºC. Aerobic plates counts petrifilms were used as non-selective medium for both bacteria, Enterobacteriaceae petrifilms were used as selective medium for Salmonella spp., and peptone water modified with sodium azide as a selective medium for Enterococcus faecium …

Genetic Parameters For Docility, Weaning Weight, Yearling Weight, And Intramuscular Fat Percentage In Hereford Cattle, J. A. Torres-Vázquez, Matthew L. Spangler

Department of Animal Science: Faculty Publications

Cattle behavior, including measures of docility, is important to beef cattle producers not only from a human safety perspective but also due to potential correlations to economically relevant traits. Field data from the American Hereford Association was used to estimate genetic parameters for chute score (CS; n = 25,037), weaning weight (WW; n = 24,908), yearling weight (YW; n = 23,978), and intramuscular fat percentage (IMF; n = 12,566). Single-trait and bivariate animal models were used to estimate heritabilities and genetic correlations. All models included fixed effects of sex and contemporary group, defined as herd–year–season, and direct genetic and residual …

Inactivation Of Escherichia Coli O157:H7 And Shiga Toxin Producing E. Coli (Stec) Throughout Beef Summer Sausage Production And The Use Of High Pressure Processing As An Alternative Intervention To Thermal Processing, Eric L. Oliver

Department of Food Science and Technology: Dissertations, Theses, and Student Research

Escherichia coli O157:H7 and six additional serogroups of Shiga Toxin-producing E. coli (STEC-7) have been implicated in foodborne illness outbreaks related to fermented sausage products and are considered adulterants by the USDA-FSIS. The objective of this study was to evaluate high pressure processing (HPP) as an alternative to thermal treatment to reduce STEC-7 meeting the USDA-FSIS performance standards (5.0-log reduction). A rifampicin-resistant, non-pathogenic E. coli (surrogate) cocktail, was used in manufacturing testing. Sausages were fermented at ~42.2°C, slowly increased to 54.4°C internal temperature, cold showered, and chilled for 6 hours. Sampling occurred post-fermentation (PF; pH 5.0), internal temperature 48.9°C (I-48.9°C), …

Birding Nebraska’S Central Platte Valley And Rainwater Basin, Paul A. Johnsgard

Zea E-Books Collection

Central Nebraska's Platte River and Rainwater Basin are primary stops in the migration patterns of numerous North American waterfowl, including sandhill and whooping cranes, sandpipers, geese, ducks, gulls, and shorebirds of many types. Upland species also abound there as well. The region's most eminent ornithologist provides birding and travel information for casual tourists and hard-core enthusiasts: locations, seasons, events, routes, accommodations, contacts, etc. A complete species list is also included. This birders' guide is as essential as your boots and binoculars.

The central Platte River Valley region, as defined by Brown & Johnsgard (2012) and adopted here, encompasses 12 south-central …

Efficiency Of Energy Utilization And Fecal Mineral Excretion In Holstein And Jersey Dairy Cows, Gabriel Garcia Gomez

Department of Animal Science: Dissertations, Theses, and Student Research

Eight multiparous Holstein and 8 Jersey dairy cows were used to complete energy balance trials designed to determine the effect of breed on the production and energy efficiency of milk, and energy partitioning. A repeated switchback design was used to compare the effect of cow breed. Diets consisted of 24.5% corn silage, 18.4% alfalfa hay, 6.9% grass hay, with either 22.9% rolled corn and 14.8% soybean meal (CON) or 8.95% rolled corn and 28.8% reduced fat distillers grains (RFDDGS) DM-basis. Diets were offered ad libitum for a 28 d adaptation period and 95% ad libitum for a 4 d collection …

Production And Economic Efficiencies Of Intensified Cow-Calf Production Management Systems, Jason M. Warner

Department of Animal Science: Dissertations, Theses, and Student Research

The objective of four experiments conducted was to evaluate production and economic efficiencies of intensified cow-calf production management systems. The first experiment tested the effect of calf age at weaning on cow and calf performance and feed utilization at 2 locations. Body weight change from early to conventional weaning time was greater for early-weaned cows. Cow BCS and conception rates were not impacted by weaning. Calf BW at conventional weaning time was greater for conventionally-weaned calves than early-weaned calves at ARDC, but greater for early-weaned than conventionally-weaned calves at PHREC. Calf ADG per unit of total feed energy intake was …

Molecular Genetic Aspects Of Iron And Copper Cross-Talk In Arabidopsis Thaliana, Qingyuan Xiang

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Iron (Fe) and copper (Cu) are essential micronutrients for plants and humans who consume plants. Their functions are tightly linked. For example, both of Fe and Cu work as cofactors in superoxide dismutase proteins to prevent reactive oxygen species damage. When Fe is removed from nutrient solution, plants uptake more Cu, but how plants sense and respond to Fe status is not fully understood. This thesis includes two projects that focus on Fe and Cu interaction, homeostasis and cross-talk in Arabidopsis thaliana.

Two Arabidopsis ecotypes, Kas-1 and Tsu-1, have difference in timing of Cu accumulation in rosettes under Fe …

Managing Net Income Risk With Crop Insurance, Farm Bill, And Hedging, Cory Walters

Cornhusker Economics

Managing uncertain yields and prices before planting is a primary concern to producers, especially when financial ruin is at stake. To manage uncertainty, producers are presented with a complex set of financial tools from both public sources (crop insurance and Farm Bill) and private sources (commodity futures markets). Over time these tools and their relation have evolved. Prior to the mid-1990s, before crop insurance expanded, producers relied primarily on privately operated commodity futures markets and publicly funded government programs, such as the disaster assistance program and the loan deficiency program, to reduce income uncertainty. Since this time the U.S. government …

Genomic Analysis Of Sow Reproductive Traits: Identification Of Selective Sweeps, Major Genes, And Genotype By Diet Interactions, Melanie D. Trenhaile

Department of Animal Science: Dissertations, Theses, and Student Research

Reproductive traits, such as litter size and reproductive longevity, are economically important. However, selection for these traits is difficult due to low heritability, polygenic nature, sex-limited expression, and expression late in life. Marker-assisted selection may provide an alternative to increase genetic progress.

Nebraska Index Line (NIL) has been selected for litter size related traits since 1981. It is one of the main contributing lines to the UNL reproductive longevity resource population (n > 1,500), which was genotyped for 60,000 SNPs, phenotyped for age at puberty (AP), lifetime number of parities (LTNP), litter size traits, and other reproductive traits, and fed either …

The Human Gut Mycobiome: Pitfalls And Potentials — A Mycologist's Perspective, Mallory J. Suhr, Heather E. Hallen-Adams

Department of Food Science and Technology: Faculty Publications

We have entered the Age of the Microbiome, with new studies appearing constantly and whole journals devoted to the human microbiome. While bacteria outnumber other gut microbes by orders of magnitude, eukaryotes are consistently found in the human gut, and are represented primarily by the fungi. Compiling 36 studies spanning from 1917 to 2015, we found at least 267 distinct fungal taxa have been reported from the human gut, and seemingly every new study includes one or more fungi not previously described from this niche. This diversity, while impressive, is illusory. If we examine gut fungi, we will quickly observe …

Occupancy Analysis And Density Estimation Of Kori Bustards (Ardeotis Kori) And Helmeted Guineafowl (Numida Meleagris) For Use In Landscape Conservation Planning In The Northern Tuli Game Reserve, Botswana, Kathryn R. Mccollum

School of Natural Resources: Dissertations, Theses, and Student Research

For understudied species, more informed conservation planning and decision-making on both the local and landscape levels may be attained through the use of occupancy and abundance estimations. Here, we focus on two iconic bird species in eastern Botswana, kori bustards (Ardeotis kori) and helmeted guineafowl (Numida meleagris). The overall goal of this project was to better understand the hierarchy of factors that influence occupancy (ψ) and density of kori bustard and helmeted guineafowl populations within the Northern Tuli Game Reserve and how these factors may interact to affect landscape conservation and usage. We performed distance sampling …

Effects Of Wind Turbine Noise On Male Greater Prairie-Chicken Vocalizations And Chorus, Cara E. Whalen

School of Natural Resources: Dissertations, Theses, and Student Research

Wind energy facilities are constructed without full knowledge of their effects on birds, and the noise generated by wind turbines is a particular concern. I investigated the effects of wind turbine noise on male Greater Prairie-Chicken (Tympanuchus cupido pinnatus) vocalizations and chorus near Ainsworth, NE, USA in 2013 and 2014. I studied 14 leks located in the area surrounding a 36-turbine wind energy facility. I used two main approaches in this study. First, I recorded Greater Prairie-Chicken boom, cackle, whine, and whoop vocalizations at each of the study leks and measured the duration, sound pressure level, peak frequency, …

Biotic Potential And Reproductive Parameters Of Spodoptera Dolichos (Lepidoptera: Noctuidae) In The Laboratory, Débora G. Montezano, Daniel R. Sosa-Gómez, Silvana L. Paula-Moraes, Vânia F. Roque-Specht, Edegar Fronza, Neiva M. Barros, Alexandre Specht

Department of Entomology: Faculty Publications

The biotic potential and reproductive parameters of Spodoptera dolichos (Fabricius, 1794) were evaluated under controlled conditions (25 ± 1°C, 70 ± 10% RH and 14 hour photophase). The longevity, pre-, post- and oviposition periods, fecundity, and fertility of 25 couples were evaluated. The longevity of females (12.9 days) was not significantly different than that of males (12.4 days). The mean durations of the pre-, post- and oviposition periods were 3.0, 0.4 and 10.4 days, respectively. The mean fecundity was 4,086.0 eggs per female and mean fertility was 3,557.8 larvae per female. On average, a female copulated 1.4 times. The biotic …

Glucose-Fructose Likely Improves Gastrointestinal Comfort And Endurance Running Performance Relative To Glucose-Only, P. B. Wilson, S. J, Ingraham

Athletic Performance Research

This study aimed to determine whether glucose-fructose (GF) ingestion, relative to glucose-only, would alter performance, metabolism, gastrointestinal (GI) symptoms, and psychological affect during prolonged running. On two occasions, 20 runners (14 men) completed a 120-min submaximal run followed by a 4-mile time trial (TT). Participants consumed glucose-only (G) or GF (1.2:1 ratio) beverages, which supplied ~1.3 g/min of carbohydrate. Substrate use, blood lactate, psychological affect [Feeling Scale (FS)], and GI distress were measured. Differences between conditions were assessed using magnitude-based inferential statistics. Participants completed the TT 1.9% (−1.9; −4.2, 0.4) faster with GF, representing a likely benefit. FS ratings were …