Life Sciences Commons^™

Arabidopsis Bhlh100 And Bhlh101 Control Iron Homeostasis Via A Fit-Independent Pathway, Alicia B. Sivitz, Victor Hermand, Catherine Curie, Grégory Vert

Dartmouth Scholarship

Iron deficiency induces a complex set of responses in plants, including developmental and physiological changes, to increase iron uptake from soil. In Arabidopsis, many transporters involved in the absorption and distribution of iron have been identified over the past decade. However, little is known about the signaling pathways and networks driving the various responses to low iron. Only the basic helix–loop–helix (bHLH) transcription factor FIT has been shown to control the expression of the root iron uptake machinery genes FRO2 and IRT1. Here, we characterize the biological role of two other iron-regulated transcription factors, bHLH100 and bHLH101, in iron homeostasis. …

Har1 And Ljamp1 Dependent Regulation Of Root Architecture In Lotus Japonicus, Chong Sung Kim

Electronic Thesis and Dissertation Repository

Here, I characterize a root-branching hypermorph of Lotus japonicus, called cluster root-like1 (crl1), which originated from a har1-1 suppressor screen. I have shown that the crl1 root phenotype is determined by two independently segregating recessive mutations, har1-1 and Ljamp1-1, with corresponding HAR1 and LjAMP1 encoding an LRR‑receptor-like kinase and a predicted homologue of the Arabidopsis ALTERED MERISTEM PROGRAM 1 protein, respectively. Unlike har1-1, the Ljamp1 mutation does not affect the symbiotic properties of L. japonicus Gifu but exerts a pleiotropic effect on shoot development. Root architecture, however, is regulated by a synergistic action of HAR1 …

The Evolutionary Genetics Of Seed Shattering And Flowering Time, Two Weed Adaptive Traits In Us Weedy Rice, Carrie S. Thurber

Open Access Dissertations

Weedy rice is a persistent weed of cultivated rice (Oryza sativa) fields worldwide, which competes with the crop and drastically reduces yields. Within the US, two main populations of genetically differentiated weedy rice exist, the straw-hulled (SH) group and the black-hulled awned (BHA) group. Current research suggests that both groups are derived from Asian cultivated rice. However, the weeds differ from the cultivated groups in various morphological traits. My research focus is on the genetic basis of two such traits: seed shattering ability and differences in flowering time. The persistence of weedy rice has been partly attributed to its ability …

Functional Analysis Of Three Arabidopsis Argonautes Using Slicer-Defective Mutants, Alberto Carbonell, Noah Fahlgren, Hernan Garcia-Ruiz, Kerrigan B. Gilbert, Taiowa A. Montgomery, Tammy Nguyen, Josh T. Cuperus, James C. Carrington

Department of Plant Pathology: Faculty Publications

In RNA-directed silencing pathways, ternary complexes result from small RNA-guided ARGONAUTE (AGO) associating with target transcripts. Target transcripts are often silenced through direct cleavage (slicing), destabilization through slicerindependent turnover mechanisms, and translational repression. Here, wild-type and active-site defective forms of several Arabidopsis thaliana AGO proteins involved in posttranscriptional silencing were used to examine several AGO functions, including small RNA binding, interaction with target RNA, slicing or destabilization of target RNA, secondary small interfering RNA formation, and antiviral activity. Complementation analyses in ago mutant plants revealed that the catalytic residues of AGO1, AGO2, and AGO7 are required to restore the defects …

Rosette Iron Deficiency Transcript And Microrna Profiling Reveals Links Between Copper And Iron Homeostasis In Arabidopsis Thaliana, Brian M. Waters, Samuel A. Mcinturf, Ricardo J. Stein

Department of Agronomy and Horticulture: Faculty Publications

Iron (Fe) is an essential plant micronutrient, and its deficiency limits plant growth and development on alkaline soils. Under Fe deficiency, plant responses include up-regulation of genes involved in Fe uptake from the soil. However, little is known about shoot responses to Fe deficiency. Using microarrays to probe gene expression in Kas-1 and Tsu-1 ecotypes of Arabidopsis thaliana, and comparison with existing Col-0 data, revealed conserved rosette gene expression responses to Fe deficiency. Fe-regulated genes included known metal homeostasis-related genes, and a number of genes of unknown function. Several genes responded to Fe deficiency in both roots and rosettes. …

Involvement Of Hexokinase1 In Plant Growth Promotion As Mediated By Burkholderia Phytofimans, Jae Min Park

Electronic Thesis and Dissertation Repository

Burkholderia phytofirmans strain PsJN consistently enhanced the growth of potato plants in vitro. The role of hexokinase1 in glucose phosphorylation was investigated in plants with PsJN. Increased hexokinase1 activity only in roots of PsJN-treated plants cultivar Kennebec suggests that hexokinase1 is associated with plant root and stem growth.

Plant growth with PsJN was determined when plants were grown with different sugars at various concentrations. PsJN-treated plants expressed diverse forms of growth promotion. When growth promotion did occur, hexokinase1 activity also increased. Growth promotion and hexokinase1 activity appear to be correlated to the enzyme to recognize the substrate for catalytic activity. …

Cadmium Accumulation And Distribution In Lettuce And Barley, Fardausi Akhter

Electronic Thesis and Dissertation Repository

Cadmium (Cd) is a non-essential trace element and its environmental concentrations are increasing due to human activities. Edible plants can accumulate high concentrations of Cd, which could be toxic to humans. Understanding how and where Cd is stored in plants is important for ensuring lower concentration of Cd in the food. In this thesis, the accumulation and distribution of Cd in three agricultural plants, namely lettuce (Lactuca sativa L.), barley (Hordeum vulgare L.) and radish (Raphanus sativus L.), were investigated with a focus on the potential mechanisms involved in the localization of Cd in the root. The …

Protein Body Formation In Stable Transgenic Plants Of Nicotiana Tabacum Expressing Elastin-Like Polypeptide And Hydrophobin Fusion Proteins, Sonia P. Gutierrez

Electronic Thesis and Dissertation Repository

Plants are recognized as an efficient and inexpensive system to produce valuable recombinant proteins. However, the use of plants still faces two main limitations: the low accumulation levels of some recombinant proteins and the lack of efficient protein purification methods. Two fusion partners, elastin-like polypeptides (ELP) and hydrophobin I (HFBI) were found to increase the accumulation of recombinant proteins and induce the formation of protein bodies (PBs) when targeted to the ER in transient expression assays. In this study I examined the effect of these tags in stable transgenic plants of two Nicotiana tabacum cultivars when fused to green fluorescent …

Enhancement Or Attenuation Of Disease By Deletion Of Genes From Citrus Tristeza Virus, Satyanarayana Tatineni, William O. Dawson

Department of Plant Pathology: Faculty Publications

Stem pitting is a common virus-induced disease of perennial woody plants induced by a range of different viruses. The phenotype results from sporadic areas of the stem in which normal xylem and phloem development is prevented during growth of stems. These alterations interfere with carbohydrate transport, resulting in reduced plant growth and yield. Citrus tristeza virus (CTV), a phloem-limited closterovirus, induces economically important stem-pitting diseases of citrus. CTV has three nonconserved genes (p33, p18, and p13) that are not related to genes of other viruses and that are not required for systemic infection of some species of citrus, which allowed …

High School Horticulture Curriculum, Margaret Maratsos

Horticulture and Crop Science

Horticulture is just one of the many topics covered in a high school agriculture curriculum, and yet, there are very few lesson plans or resources available to teachers for these classes specifically. The objectives of this project were to compile a set of lesson plans, lab plans, and tests that would emphasize interactive and investigative learning. The lesson plans were written in such a way that they reflected a certain set of standards, set down by the state of California, and were meant to serve as a bare outline of topics that would be discussed within a week’s worth of …

Functional Characterization Of A Jacalin-Like Lectin Domain-Containing Protein In Arabidopsis Thaliana, Shane Reighard

All Theses

Jacalin-related lectins (JRLs) are proteins that bind carbohydrates. Functionally, JRLs are thought to be involved in a diverse array of functions including biotic stress defense, intracellular storage, abiotic stress response, and plant development. Recent Arabidopsis thaliana microarray data indicate that a Jacalin-like domain-containing protein (JLL1) exhibits highly root specific expression. Previous transcriptomic and proteomic studies indicate that JLL1 may have a dual role in planta as a biotic stress defense protein and in plant development. In order to better understand the physiological function of JLL1 in Arabidopsis, several different analyses were conducted examining its regulatory sequences, spatial expression, responsiveness to …

The Evolution Of Natural Plant Communities Through Crop Migration And Crop-To-Weed Gene Flow, Meredith G. Schafer

Graduate Theses and Dissertations

With the rising demand for food and biofuels, the efficiency of crop production has become vital to assuring food security. Genetically engineered (GE) crop varieties are broadly thought to be a solution for improving the efficiency of crop production, but concerns regarding their release have heightened as more discoveries have focused on the influence of genetically engineered crops on native and weedy plant species. Risk assessment of GE crop varieties focuses on two main areas: feralization of crop systems and crop-weed hybridization. Risks include naturalization, transgene introgression, and the formation of novel genotypes in natural systems. In this study, roadside …

Flight Period And Species Composition Of Sirex (Hymenoptera: Siricidae) And Associated Deladenus (Nematoda: Neotylenchidae) Within Arkansas Pine Forests, Danielle Keeler

Graduate Theses and Dissertations

The European woodwasp, Sirex noctilio F. (Hymenoptera: Siricidae), which is a known destructive pest of pine in the southern hemisphere was recently discovered in the eastern United States. Before we can understand how S. noctilio may affect pine forests throughout the United States, we need a better understanding of native Sirex and the role they play in the ecosystem. The objectives of this research were to 1) determine species composition and flight period for native Sirex; 2) confirm presence of parasitic nematodes, Deladenus (Nematoda: Neotylenchidae), within adult Sirex; 3) investigate Deladenus parasitism rates; 4) verify the number of Deladenus species …

List Of Thylakoid Zinc-Finger Proteins In Arabidopsis, Yan Lu

Yan Lu

No abstract provided.

Efficacy And Stability Of Integrating Fungicide And Cultivar Resistance To Manage Fusarium Head Blight And Deoxynivalenol In Wheat, K. T. Willyerd, C. Li, L. V. Madden, C. A. Bradley, G. C. Bergstrom, L. E. Sweets, M. Mcmullen, J. K. Ransom, A. Grybauskas, L. Osborne, S. N. Wegulo, D. E. Hershman, K. Wise, W. W. Bockus, D. Groth, R. Dill-Macky, E. Milus, P. D. Esker, K. D. Waxman, E. A. Adee, S. E. Ebelhar, B. G. Young, P. A. Paul

Department of Plant Pathology: Faculty Publications

Integration of host resistance and prothioconazole + tebuconazole fungicide application at anthesis to manage Fusarium head blight (FHB) and deoxynivalenol (DON) in wheat was evaluated using data from over 40 trials in 12 U.S. states. Means of FHB index (index) and DON from up to six resistance class–fungicide management combinations per trial (susceptible treated [S_TR] and untreated [S_UT]; moderately susceptible treated [MS_TR] and untreated [MS_UT]; moderately resistant treated [MR_TR] and untreated [MR_UT]) were used in multivariate meta-analyses, and mean log response ratios across trials were estimated and transformed to estimate mean percent control ( C ) due to the management …

Closely Paired Flowers Produce Single Fruit, W. John Hayden

Biology Faculty Publications

Perhaps one of the most striking features of partridge berry (Mitchella repens), the 2012 VNPS Wildflower of the Year, is its closely paired flowers that yield a single berry fruit (figure 1). That these fruits are double structures, formed by pairs of flowers, is revealed in the presence of two discrete rings of five sepals each on the fruit apex, or in some cases, by a single ring of 10 sepals. Viewed in isolation, without context, the nature of these double fruits may seem perplexing, but as in so many things, a comparative perspective helps to make sense …

The Effects Of Cytokinin On The Transcriptional Regulation Of Pin Expression In Arabidopsis Thaliana, Elizabeth Burgess

Honors Theses and Capstones

The processes of cell division and differentiation are critical to the development of any multicellular organism. During the formation of plant roots these processes take place at a region of the root tip called the meristem. Cytokinin and auxin are two plant growth hormones that influence this process. Although these two growth hormones are both necessary they also appear in many ways to have an antagonistic relationship. As meristematic root cells undergo differentiation they cease dividing. It has been proposed that the size of the root meristem and thus the overall rate of root growth are determined by the balance …

The Pseudomonas Syringae Hrpj Protein Controls The Secretion Of Type Iii Translocator Proteins And Has A Virulence Role Inside Plant Cells, Emerson Crabill, Andrew Karpisek, James R. Alfano

Center for Plant Science Innovation: Faculty and Staff Publications

The bacterial plant pathogen Pseudomonas syringae injects effector proteins into plant cells via a type III secretion system (T3SS), which is required for pathogenesis. The protein HrpJ is secreted by P. syringae and is required for a fully functional T3SS. A hrpJ mutant is non-pathogenic and cannot inject effectors into plant cells or secrete the harpin HrpZ1. Here we show that the hrpJ mutant also cannot secrete the harpins HrpW1 and HopAK1 or the translocator HrpK1, suggesting that these proteins are required in the translocation (injection) of effectors into plant cells. Complementation of the hrpJ mutant with secretion incompetent HrpJ …

Herbaceous 2012 (June 3), Amy L. Myers, Julia I. Chapman, Ryan W. Mcewan

Data Files: Drew Woods Permanent Plots

Herbaceous vegetation data collected in 2012 at Drew Woods State Nature Preserve in Darke County, OH. Data key is provided in a supplemental file.

Effects Of Single And Double Infections Of Winter Wheat By Triticum Mosaic Virus And Wheat Streak Mosaic Virus On Yield Determinants, E. Byamukama, S. Tatineni, G. L. Hein, R. A. Graybosch, P. Stephen Baenziger, R. French, S. N. Wegulo

Department of Plant Pathology: Faculty Publications

Triticum mosaic virus (TriMV) is a recently discovered virus infecting wheat (Triticum aestivum) in the Great Plains region of the United States. It is transmitted by wheat curl mites (Aceria tosichella) which also transmit Wheat streak mosaic virus (WSMV) and Wheat mosaic virus. In a greenhouse study, winter wheat ‘Millennium’ (WSMV susceptible) and ‘Mace’ (WSMV resistant) were mechanically inoculated with TriMV, WSMV, TriMV+WSMV, or sterile water at the two-leaf growth stage. At 28 days after inoculation, final chlorophyll meter (soil plant analysis development [SPAD]) readings, area under the SPAD progress curve (AUSPC), the number of …

The Invasion Of California Grasslands: Past, Present, And Future Implications, Danielle Simone Caziarc

Social Sciences

No abstract provided.

Composting Manure And Other Organic Materials, Charles S. Wortmann, Charles A. Shapiro

Department of Agronomy and Horticulture: Faculty Publications

The Composting Process

Composting is the aerobic decomposition of manure or other organic materials in the thermophilic temperature range (104-149oF). Composted material is odorless, fine-textured, and low-moisture. It can be bagged and sold for use in gardens or nurseries, or used as fertilizer on cropland with little odor or fly breeding potential. Composting improves the handling characteristics of any organic residue by reducing its volume and weight. Composting can kill pathogens and weed seeds.

Disadvantages of composting organic residues include loss of nitrogen and other nutrients, time for processing, cost for handling equipment, available land for composting, odors, marketing, diversion …

Host Pathogen Interactions: Is Arabidopsis Thaliana Remembered By Its Nemesis Pseudomonas Syringae?, Daniel Z. Kreiser

Lawrence University Honors Projects

Plants contain innate immune systems that deter pathogen infection. Pattern recognition receptors bind microbe-associated molecular patterns (MAMPs), triggering immunity. MAMPs are proteins exclusive to pathogens that are typically indispensable for their survival. For this reason, MAMPs cannot be mutated or removed without causing pathogen death. However, this does not necessitate constitutive expression of MAMPs. In this study, the MAMP response of Arabidopsis thaliana was utilized to determine differential detection of MAMPs expressed by Pseudomonas syringe pv. tomato DC3000 when pretreated with A. thaliana. Results demonstrated that more MAMPs are detected when P. syringae had previously encountered A. thaliana, …

Macrophyte Communities Of Lake Winnebago: Baseline Study Of Species Composition With Abundances And Water Quality Conditions, Mackenzie Kessenich

Lawrence University Honors Projects

Historical records from Lake Winnebago show minimal macrophyte growth; however, reports from recent years claim that macrophyte growth in some areas of the lake has reached nuisance levels. This study aimed to investigate the species of macrophytes present and their abundances in four near-shore locations, as well as measurements of multiple water quality conditions. Rake sampling was used to identify species and quantify their abundances and distributions. In addition, data were collected on light penetration, Secchi depths, and suspended algae chlorophyll concentrations at each site. These data from shallow near-shore sites reveal trends in changing water clarity and light penetration …

Identification And Characterization Of The Arabidopsis Homolog Of The Yeast Trex-2 Complex, Gang Tian

Electronic Thesis and Dissertation Repository

Nuclear pore complexes (NPCs) are vital to nuclear-cytoplasmic communication in eukaryotes. The yeast Thp1-Sac3-Cdc31-Sus1 complex, also known as the TREX-2 complex, is anchored to the NPC via the nucleoporin Nup1, and is essential for mRNA export. In this study, the Arabidopsis homolog of the yeast TREX-2 complex was discovered. Physical and functional evidence support the identification of the Arabidopsis orthologs of the yeast Thp1 and Nup1. Of three Sac3 Arabidopsis homologs, two are putative TREX-2 components. Surprisingly, none are required for mRNA export as is the yeast Sac3. Physical association with TREX-2 was observed for the two Cdc31 homologs, but …

Herbaceous 2012 (May 19), Amy L. Myers, Julia I. Chapman, Ryan W. Mcewan

Data Files: Drew Woods Permanent Plots

Herbaceous vegetation data collected in 2012 at Drew Woods State Nature Preserve in Darke County, OH. Data key is provided in a supplemental file.

Escape From Preferential Retention Following Repeated Whole Genome Duplications In Plants, James C. Schnable, Xiaowu Wang, J. Chris Pires, Michael Freeling

Department of Agronomy and Horticulture: Faculty Publications

The well supported gene dosage hypothesis predicts that genes encoding proteins engaged in dose–sensitive interactions cannot be reduced back to single copies once all interacting partners are simultaneously duplicated in a whole genome duplication. The genomes of extant flowering plants are the result of many sequential rounds of whole genome duplication, yet the fraction of genomes devoted to encoding complex molecular machines does not increase as fast as expected through multiple rounds of whole genome duplications. Using parallel interspecies genomic comparisons in the grasses and crucifers, we demonstrate that genes retained as duplicates following a whole genome duplication have only …

Herbaceous 2012 (May 5), Amy L. Myers, Julia I. Chapman, Ryan W. Mcewan

Data Files: Drew Woods Permanent Plots

Herbaceous vegetation data collected in 2012 at Drew Woods State Nature Preserve in Darke County, OH. Data key is provided in a supplemental file.

An Investigation Of Fraxinus Americana Branch Sway Using A 3 Dimensional Motion Capture System, Anna T. Campiformio

Master's Theses

Abstract

Wind is a dominant abiotic factor that a tree experiences throughout its lifetime and can cause severe tree damage, resulting in risk of injury to humans, and economic and ecological losses. It is thought that trees develop structural properties and architectures that help withstand loading conditions by dissipating wind energy through damping mechanisms. The role of branch motion in reducing potential dangerous wind loads has been the focus of relatively few studies. Even fewer studies have examined tree sway response to natural wind loaded conditions. In this investigation, branch frequencies were calculated for three Fraxinus americana using a three-dimensional …

A Comparative Analysis Of The Relative Water Content Of The Pollen Of Early Diverging Angiosperms, Andrew Robert Moffatt

Chancellor’s Honors Program Projects

No abstract provided.