Life Sciences Commons^™

Molecular And Biochemical Responses Of Hypoxia Exposure In Atlantic Croaker Collected From Hypoxic Regions In The Northern Gulf Of Mexico, Md. Saydur Rahman, Peter Thomas

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

A major impact of global climate change has been the marked increase worldwide in the incidence of coastal hypoxia (dissolved oxygen, DOhif-α; neuronal nitric oxide synthase, nNOS; and insulin-like growth factor binding protein, igfbp mRNAs and protein carbonyl (PC, an oxidative stress indicator) content were elevated several-fold in brain and liver tissues of croaker collected from nGOM hypoxic sites. All of these molecular and biochemical biomarkers were also upregulated ~3-10-fold in croaker brain and liver tissues within 1–2 days of hypoxia exposure in controlled laboratory experiments. These results suggest that hif-αs, nNOS and igfbp-1 transcripts and PC contents …

Evaluation Of Levels Of Antibiotic Resistance In Groundwater-Derived E. Coli Isolates In The Midwest Of Ireland And Elucidation Of Potential Predictors Of Resistance, Jean O'Dwyer, Paul Hynds, Matthieu Pot, Catherine Adley, Michael Ryan

Articles

Antibiotic-resistant (pathogenic and non-pathogenic) organisms and genes are now acknowledged as significant emerging aquatic contaminants with potentially adverse human and ecological health impacts, and thus require monitoring. This study is the first to investigate levels of resistance among Irish groundwater (private wells) samples; Escherichia coli isolates were examined against a panel of commonly prescribed human and veterinary therapeutic antibiotics, followed by determination of the causative factors of resistance. Overall, 42 confirmed E. coli isolates were recovered from a groundwater-sampling cohort. Resistance to the human panel of antibiotics was moderate; nine (21.4%) E. coli isolates demonstrated resistance to one or more …

Technological Modernization And Its Impact On Agriculture, Fisheries And Fossil Fuel Utilization In The Asia Pacific Countries With Emphasis On Sustainability Perspective, Rajee Olaganathan, Kathleen Quigley

Publications

Modernization is a process that moves towards efficiency. This affects most of the fields such as agriculture, fisheries, forestry, urban planning, policy, fossil fuel usage, manufacturing, technology, economic growth etc. This process plays a major role in moving forward making things faster, better and basically more efficient. The effects of modernization on all these fields bring about the major changes to aspects such as social, economic and the environment. The level of operation has increased from a domestic level; small family scale business to large commercial levels. As the level of operation increased, the utilization of natural resources increased gradually …

The Conservation Status Of Marine Biodiversity Of The Pacific Islands Of Oceania, H. Pippard, G. M. Ralph, M. S. Harvey, K. E. Carpenter, J. R. Buchanan, D. W. Greenfield, H. D. Harwell, H. K. Larson, A. Lawrence, C. Linardich, K. Matsuura, H. Motomura, T. A. Munroe, R. F. Myers, B. C. Russell, W. F. Smith-Vaniz, J. C. Vié, R. R. Thaman, J. T. Williams

Biological Sciences Faculty Publications

The Pacific Islands of Oceania are small islands and atolls occurring over a vast expanse of ocean that are characterized by immense biodiversity and endemism. This project represents a major expansion of the coverage of the Pacific Islands’ marine biodiversity on the IUCN Red List of Threatened Species. The threats to Pacific Island marine biodiversity are many. Results from IUCN Red List initiatives such as this can guide decision-making and conservation prioritization of Pacific Island governments, non-governmental organizations (NGOs) and the private sector. By shaping regional and national policies with these data in mind, priority sites for maintaining marine biodiversity …

The Potential Of Atmospheric Air Cold Plasma For Control Of Bacterial Contaminants Relevant To Cereal Grain Production, Agata Los, Dana Ziuzina, Daniela Boehm, Patrick J. Cullen, Paula Bourke

Articles

The aim of this work was to investigate the efficacy of dielectric barrier discharge atmospheric cold plasma (DBD ACP) against bacteria associated with grains quality and safety. ACP inactivation efficacy was tested against biofilms formed by different strains of E. coli, Bacillus and Lactobacillus in grain model media and against B. atrophaeus endospores either in grain media or attached on abiotic surfaces. Effects were dependent on bacterial strain, media composition and mode of ACP exposure. ACP treatment for 5min reduced E. coli spp., B. subtilis and Lactobacillus spp. biofilms by >3 log10, whereas insignificant reductions were achieved for B. atrophaeus. …

Impact Of Atmospheric Pressure Nonequilibrium Plasma Discharge On Polymer Surface Metrology, Laurence Scally, James Lalor, Patrick J. Cullen, Vladimir Milosavljevic

Articles

Due to the attraction of plasma technologies as a clean and efficient means of surface modification, significant research has gone into the physical and chemical aspects of polymer functionalization. In this study, it was shown that the use of an atmospheric plasma jet can efficiently modify the surface of polyethylene terephthalate samples and change their hydrophobic properties to more hydrophilic characteristics. The dependence on the changes with respect to time, distance, and atomic oxygen (O I) intensity were considered as factors. It was found that with closer proximity to the plasma source (without causing thermal degradation) and with increasing levels …

Tallgrass Prairie Center: The Weeds Of Crp Polinator Habitat, Molly A. Langhenry, Mark E. Sherrard

UNI Conservation Corps Projects

An investigation of weed species and their impact on pollinator habitat.

Tallgrass Prairie Center: A Floral Resource Index To Assess Pollinator Habitat Quality In Eastern Iowa Prairies, Gabrielle Brown, Laura L. Jackson

UNI Conservation Corps Projects

Report of an investigation on the impact of biodiversity on the habitat for native pollinators and European honey bees.

Seagrasses Of The North West Of Western Australia: Biogeography And Considerations For Dredging-Related Research: Report Of Theme 5 - Project 5.1.2 Prepared For The Dredging Science Node, Kathryn Mcmahon, John Statton, Paul Lavery

Research outputs 2014 to 2021

This review was undertaken to identify which seagrass primary producers (species or different functional groups) that collectively cover the bio-geographic range of key primary producers in the northwest of Western Australia are most appropriate for the focus of subsequent research into thresholds and indicators of response to dredging-related pressures (i.e. Theme 5). An assessment framework was developed based on six criteria: biogeographic range; ecological relevance (life-history strategy, habitats, natural dynamics and ecological services); current knowledge on thresholds and bioindicators; likelihood that species are sensitive and resilient to dredging related stressors; extent of improvement in applied knowledge; and likelihood of being …

Current State Of Knowledge Regarding The Effects Of Dredging-Related ‘Pressure’ On Seagrasses: Report Of Theme 5 - Project 5.1.1 Prepared For The Dredging Science Node, Kathryn Mcmahon, Paul Lavery, John Statton, Roisin Mccallum, Udhi Hernawan

Research outputs 2014 to 2021

This review summarises our understanding, from a northwest of Western Australia and global perspective, the pressures seagrasses are exposed to from dredging, their tolerance thresholds and responses to dredging related stressors, and the bioindicators of dredging related stressors. From this information, we also identified gaps in our knowledge and areas where environmental management and monitoring approaches could be improved.

Aims

To determine the levels of stress (light reduction/sediment deposition) that occur under dredging conditions and evaluate the likely effect of these levels of pressure based on the existing seagrass literature, considering the range of variability and environmental quality conditions associated …

Effects Of Dredging-Related Pressures On Critical Ecological Processes For Organisms Other Than Fish Or Coral. Report Of Theme 9 - Project 9.1 Prepared For The Dredging Science Node, Jessie Short, Matthew Fraser, Dianne Mclean, Gary Kendrick, Maria Byrne, Julian Caley, Doug Clarke, Andy Davis, Paul Ertemeijer, Stuart Field, Sam Gustin-Craig, John Huisman, John Keesing, Mick Keough, Paul Lavery, Ray Mansini, Kathryn Mcmahon, Kerrie Mergersen, Michael Rasheed, John Statton, Jim Stoddart, Paul Wu

Research outputs 2014 to 2021

This study reviewed environmental windows for organisms other than corals and fish such as sessile invertebrates, macroalgae and seagrasses. Environmental windows are periods of critical importance to the life history of a marine species, like reproduction and recruitment.

Aims

• To review the scientific literature on the timing and spatial extent of critical ecological processes relevant to tropical WA for marine primary producers and invertebrates (i.e. organisms other than coral and finfish) and the state of knowledge regarding potential effects of dredging on these key ecological processes. The review also had a particular focus on ecological processes in marine primary producers …

Species Distribution Model Of Invasive Alien Species Acacia Nilotica For Central-Eastern Indonesia Using Biodiversity Climate Change Virtual Laboratory (Bccvl), Sutomo, Eddie Van Etten

Research outputs 2014 to 2021

Climate change may facilitate alien species invasion into new areas. This study uses Biodiversity and Climate Change Virtual Laboratory to develop a species distribution model (SDM) of Acacia nilotica (L.) Willd. ex Delile. based upon its naturalized distribution to project the potential distribution of A. nilotica throughout tropical environment of Indonesia under current and future climate conditions. Global biodiversity information facility database was utilized to obtain the species occurrences data. The climate factors were precipitation and temperature layers, available in Worldclim current conditions (1950-2000) at 2.5 arcmin. We used Generalized Linear Model. The result was then projected to the year …

Marine Stewardship Council Full Assessment Report Western Australian Abalone Managed Fishery, Anthony M. Hart, Lachlan W.S. Strain, Alexander Hesp, E. Fisher, F J. Webster, S. J. Brand-Gardner, S. Walters

WA Marine Stewardship Council report series

This report provides a comprehensive description of the Abalone Managed Fishery (AMF) in Western Australia (WA) and contains information relevant to assist with the assessment of this fishery against the Marine Stewardship Council (MSC) standard (v2.0) for sustainable fishing. Fishers in the AMF harvest three species; Roe’s abalone (Haliotis roei), Greenlip abalone (H. laevigata) and Brownlip abalone (H. conicopora), through hand collection by diving in shallow waters off the south-western and southern coasts of WA.

Capturing Change: The Duality Of Time-Lapse Imagery To Acquire Data And Depict Ecological Dynamics, Emma Brinley Buckley, Craig R. Allen, Michael L. Forsberg, Michael Farrell, Andrew J. Caven

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

We investigate the scientific and communicative value of time-lapse imagery by exploring applications for data collection and visualization. Time-lapse imagery has a myriad of possible applications to study and depict ecosystems and can operate at unique temporal and spatial scales to bridge the gap between large-scale satellite imagery projects and observational field research. Time-lapse data sequences, linking time-lapse imagery with data visualization, have the ability to make data come alive for a wider audience by connecting abstract numbers to images that root data in time and place. Utilizing imagery from the Platte Basin Timelapse Project, water inundation and vegetation phenology …

Impact Of Disease On The Survival Of Three Commercially Fished Species, John M. Hoenig, Maya L. Groner, Matthew W. Smith, Wolfgang K. Vogelbein, David M. Taylor, Donald F. Landers Jr., John T. Swenarton, David T. Gauthier

Biological Sciences Faculty Publications

Recent increases in emergent infectious diseases have raised concerns about the sustainability of some marine species. The complexity and expense of studying diseases in marine systems often dictate that conservation and management decisions are made without quantitative data on population-level impacts of disease. Mark-recapture is a powerful, underutilized, tool for calculating impacts of disease on population size and structure, even in the absence of etiological information. We applied logistic regression models to mark-recapture data to obtain estimates of disease-associated mortality rates in three commercially important marine species: snow crab (Chionoecetes opilio) in Newfoundland, Canada, that experience sporadic epizootics …

Rapid Adaptive Responses To Climate Change In Corals, Gergely Torda, Jennifer M. Donelson, Manuel Aranda, Daniel J. Barshis, Line Bay, Michael L. Berumen, David G. Bourne, Neal Cantin, Sylvain Foret, Mikhail Matz

Biological Sciences Faculty Publications

Pivotal to projecting the fate of coral reefs is the capacity of reef-building corals to acclimatize and adapt to climate change. Transgenerational plasticity may enable some marine organisms to acclimatize over several generations and it has been hypothesized that epigenetic processes and microbial associations might facilitate adaptive responses. However, current evidence is equivocal and understanding of the underlying processes is limited. Here, we discuss prospects for observing transgenerational plasticity in corals and the mechanisms that could enable adaptive plasticity in the coral holobiont, including the potential role of epigenetics and coral-associated microbes. Well-designed and strictly controlled experiments are needed to …

The Conservation Status Of Marine Bony Shorefishes Of The Greater Caribbean, Kent E. Carptenter, Christi Linardich, Gina Ralph, N. Cox, D. R. Robertson, H. Harwell, A. Acero P., W. Anderson Jr., F. Barthelat, J. -L. Bouchereau, J. J. Brown, J. Buchanan, D. Buddo, B. Collette, M. Comeros-Raynal, M. Craig, M. Curtis, T. Defex, J. Dooley, W. Driggers Iii, C. Elfes Livsey, T. Fraser, R. Gilmore Jr., L. Grijalba Bendeck, A. Hines, R. Kishore, K. Lindeman, J. -P. Maréchal, J. Mceachran, R. Mcmanus, J. Moore, T. Munroe, H. Oxenford, F. Pezold, F. Pina Amargós, A. Polanco Fernandez, B. Polidoro, C. Pollock, R. Robins, B. Russell, C. Sayer, S. Williams

Biological Sciences Faculty Publications

The greater Caribbean biogeographic region covered in this report (representing 38 countries and territories) encompasses an outstanding marine bony shorefish richness of approximately 1,360 species, with many (53%) being endemic. This report provides an overview of the conservation status of greater Caribbean shorefishes, with detailed information available through the IUCN Red List, and gives recommendations.

Effect Of Different Debranning Degrees On The Qualities Of Whole Wheat Flour And Chinese Steamed Bread, Jikai Zhao, Fengcheng Wang, Wenjun Fu, Mengjie Wang

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Abstract: Strong gluten, middle-strong gluten and middle gluten wheat were used as raw materials to obtain whole wheat flour by dry debranning process, and the effect of different debranning degrees on the quality of wheat kernel, whole wheat flour and Chinese steamed bread was evaluated. The results showed that the ash content, hardness index and thousand kernel weight of wheat kernels were decreased with increasing debranning degree by 0.17%, 1.0–1.5 and 1.74–1.82 g, respectively, whereas the volume weight was increased by 22.0–23.4 g/L. The contents of ash and damaged starch in whole wheat flour were decreased by 0.12%–0.14% and 1.0–2.1 …

Assessment Of Critical Habitats For Recovering The Chesapeake Bay Atlantic Sturgeon Distinct Population Segment, Bob Greenlee, David H. Secor, Greg C. Garman, Matthew Balazak, Eric J. Hilton, Matthew T. Fisher

Reports

The states of Virginia and Maryland along with Virginia Commonwealth University (VCU), Virginia Institute of Marine Science (VIMS) and University of Maryland Center for Environmental Science (UMCES) partnered to assess critical habitat for recovering the Chesapeake Bay Atlantic sturgeon (Acipenser oxyrinchus oxyrinchus) distinct population segment. The primary objectives were to assess reproductive habitat in the James River, nursery habitat in the James and York Rivers and the degree of dependence of those populations to habitat in the Chesapeake Bay.

Assessing The Efficiency Of Different Sustainable Farming Practices In Reducing The Environmental Impacts Caused By Aquaculture, Rajee Olaganathan, Alicia Tang Kar Mun

Publications

Sustainability of aquaculture is achieved when aquaculture farming systems are capable of preserving the natural resource base and involves an institutional change to the environment by the attainment and continued satisfaction for present and future generations. Sustainable farming practices produce sufficient aquaculture output to satisfy the seafood demand while not burdening the environment more. The potentiality and efficiency of different sustainable aqua farming practices in reducing anthropogenic impacts to the environment by aquaculture are assessed in this paper. Polyculture is mostly adopted by small-scale rural farmers as it requires low entry barrier and help in income diversification. The input of …

The Future Of Blackbird Management Research, Page E. Klug

United States Department of Agriculture Wildlife Services: Staff Publications

Human society values birds for their intrinsic and aesthetic value as well as the ecosystem services they provide as pollinators, consumers of pests, and distributors of nutrients and seeds (Wenny et al. 2011). At the same time, conflict between birds and humans is an age-old phenomenon that has persisted as society has transformed and the scale of agriculture has expanded (Conover 2002). Managing conflict between birds and agriculture is challenging for many reasons. Foremost, the need to consider both human welfare and conservation of protected bird species is paramount, with nonlethal management methods preferred to lethal measures from societal, economical, …

Effects Of Post Eviction Resettlement On Land-Use And Cover Change In Uganda’S Oil Exploration Areas, Joseph Ssekandi, John Mburu, Oliver Wasonga, Laban Macopiyo, Charles A. Francis

Department of Agronomy and Horticulture: Faculty Publications

Evaluation of the changes in land use and land cover change (LULCC) in respect to oil exploration across the Albertine region in Uganda has been focused around the exploration areas and protected areas, with no attention to the potential impacts of evictees’ activities on resettled areas. This study used LANDSAT images to analyze the land use and land cover changes (LULCC) among the period before eviction (2002 and 2005) at the climax of eviction and resettlements (2005-2011), and during the post-resettlement period (2011-2015) to quantify the impacts of resettlements on the environment. LANDSAT images were processed using ERDAS IMAGINE software …

Spatially Biased Dispersal Of Acorns By A Scatter-Hoarding Corvid May Accelerate Passive Restoration Of Oak Habitat On California’S Largest Island, Mario B. Pesendorfer, T. Scott Sillett, Scott A. Morrison

School of Biological Sciences: Faculty Publications

Scatter hoarding by corvids (crows, jays, magpies, and nutcrackers) provides seed dispersal for many large-seeded plants, including oaks and pines. When hoarding seeds, corvids often choose nonrandom locations throughout the landscape, resulting in differential survival of seeds. In the context of habitat restoration, such disproportional storing of seeds in areas suitable for germination and establishment can accelerate expansion and recovery of large-seeded tree populations and their associated ecosystems. Here, we investigate the spatial preferences of island scrub jays Aphelocoma insularis during scatter hoarding of acorns (Quercus spp.) on Santa Cruz Island. We use a large behavioral data set on …

Fish Assemblage Structure Indicates Limited Restoration Progress Over A Lustrum Of A Severely Degraded Estuary In Southern Tamaulipas, Mexico, Alejandro Fierro-Cabo, Carlos E. Cintra-Buenrostro

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Today the biggest incentive to attempt the restoration and protection of estuarine systems is their widely recognized ecological and economic importance. In the reconstruction of an estuary where the original aquatic communities disappeared before the restoration interventions, the fish assemblage is an adequate source of indicators of initial recovery. Following substantial restoration efforts, this study reports on the biannual for a lustrum monitoring and assessment of a severely degraded estuary (Garrapatas) in terms of its fish assemblage using a reference estuary (Barberena) in Tamaulipas, Mexico. Twenty fishes were associated with the restoring and reference estuaries. Species composition (richness, abundance, dominance) …

Impact Of The Capillary Pressure-Saturation Pore-Size Distribution Parameter On Geological Carbon Sequestration Estimates, Chu-Lin Cheng, Edmund Perfect, T. Edward Yu, Michael J. Gragg

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Cost estimates for geologic carbon sequestration (GCS) are vital for policy and decision makers evaluating carbon capture and storage strategies. Numerical models are often used in feasibility studies for the different stages of carbon injection and redistribution. Knowledge of the capillary pressure-saturation function for a selected storage rock unit is essential in applications used for simulating multiphase fluid flow and transport. However, the parameters describing these functions (e.g. the van Genuchten m pore size distribution parameter) are often not measured or neglected compared to other physical properties such as porosity and intrinsic permeability. In addition, the use of average …

Linear And Nonlinear Effects Of Temperature And Precipitation On Ecosystem Properties In Tidal Saline Wetlands, Laura C. Feher, Michael J. Osland, Kereen T. Griffith, James B. Grace, Rebecca J. Howard, Camille L. Stagg, Nicholas M. Enwright, Ken W. Krauss, Christopher A. Gabler, Richard H. Day, Kerrylee Rogers

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Climate greatly influences the structure and functioning of tidal saline wetland ecosystems. However, there is a need to better quantify the effects of climatic drivers on ecosystem properties, particularly near climate‐sensitive ecological transition zones. Here, we used climate‐ and literature‐derived ecological data from tidal saline wetlands to test hypotheses regarding the influence of climatic drivers (i.e., temperature and precipitation regimes) on the following six ecosystem properties: canopy height, biomass, productivity, decomposition, soil carbon density, and soil carbon accumulation. Our analyses quantify and elucidate linear and nonlinear effects of climatic drivers. We quantified positive linear relationships between temperature and above‐ground productivity …

Pteropus Voeltzkowi And The Understory: A Study Of The Behavioral Impacts Of The Pemba Flying Fox On The Vegetation And Soil Quality Of Pemba Island, Lea Davidson

Independent Study Project (ISP) Collection

This study examines the impact of Pteropus voeltzkowi , colloquially known as the Pemba Flying Fox, on biodiversity and health of the forest ground layer. Known to serve as reforesters, high concentrations of both fruit seeds and nutrient dense guano are introduced into specific environmental locations due to the bat's behavioral patterns. Working around two roost locations, one in Ngezi Forest and the other at the Kidike conservation site near Mjini Ole, diversity of juvenile vegetation was measured and quantified. In a laboratory setting, soil samples from both sites were analyzed for impacts of guano concentration on soil chemical properties. …

The Status Of Virginia's Public Oyster Resource 2016, Melissa Southworth, Roger L. Mann

Reports

This report summarizes data collected during 2016 in the Virginia portion of the Chesapeake Bay. The report is composed of two parts, part one, oyster recruitment (shell string) in Virginia and part two, dredge survey of selected oyster bars in Virginia.

Plastic As A Habitat For Bacteria And Human Pathogens. Subjects: Life Science / Biology Grades: 6-8, Amanda Laverty

Reports

This lesson plan invites 7th grade life science students to investigate marine plastic pollution as a habitat for bacteria and human pathogens. Students will examine the hazards of marine plastic pollution and learn about current science. They will have the opportunity to use data to create graphs and discuss patterns.

The Mystery Of Ocean Acidification, Patricia Thibodeau

Reports

Grades: 9-12 Subjects: Biology | Life Science | Environmental Science | Chemistry

This lesson plan invites middle-school students to solve a mystery: what is ocean acidification and how is it affecting marine life in the Antarctic? To solve the mystery, students will participate in an ocean acidification scavenger hunt, and propose hypotheses and arrive at their own conclusions with interpretation of real-time data from the Antarctic.