Life Sciences Commons^™

Enhancing Digestibility And Ethanol Yield Of Populus Wood Via Expression Of An Engineered Monolignol 4-O-Methyltransferase, Yuanheng Cai, Kewei Zhang, Hoon Kim, Guichuan Hou, Xuebin Zhang, Huijun Yang, Huan Feng, Lisa Miller, John Ralph, Chang-Jun Liu

Huan Feng

Producing cellulosic biofuels and bio-based chemicals from woody biomass is impeded by the presence of lignin polymer in the plant cell wall. Manipulating the monolignol biosynthetic pathway offers a promising approach to improved processability, but often impairs plant growth and development. Here, we show that expressing an engineered 4-O-methyltransferase that chemically modifies the phenolic moiety of lignin monomeric precursors, thus preventing their incorporation into the lignin polymer, substantially alters hybrid aspens’ lignin content and structure. Woody biomass derived from the transgenic aspens shows a 62% increase in the release of simple sugars and up to a 49% increase in the …

Potential Economic Impacts Of Allocating More Land For Bioenergy Biomass Production In Virginia, Thomas O. Ochuodho, Janaki R. R. Alavalapati, Pankaj Lal, Domena A. Agyeman, Bernabas Wolde, Pralhad Burli

Pankaj Lal

The growing attention to renewable energy and rural development has created greater demand for production of biomass feedstock for bioenergy. However, forest growth rates and the amount of land in most existing forests may not be sufficient to sustainably supply the forest biomass required to support existing forest products industries and the expanding bioenergy industry. Additionally, concerns about agricultural land use competition have dampened expansion of biomass production on agricultural land base. One of the ways to meet the growing forest biomass feedstock demand for bioenergy production is by allocating currently marginal non-forested land for growing bioenergy feedstocks. In Virginia, …

The Economic Impacts Of Blackbird (Icteridae) Damage To Sunflower In The Usa, Karina Ernst, Julie Elser, George Linz, Hans Kandel, Jason Holderieath, Samantha Degroot, Steven Shwiff, Stephanie Shwiff

Jason Holderieath

BACKGROUND: Blackbird (Icteridae) damage to ripening sunflower (Helianthus annuus L.) has been a persistent economic issue in the USA for the last five decades. To quantify losses, we surveyed blackbird damage from 2001 to 2013 (excluding 2004) to physiologically mature sunflower in eight states: North Dakota, South Dakota, Texas, Nebraska, Minnesota, Colorado, Kansas, and Vermont.

RESULTS:We pooled data gathered during the most recent 5 years (2009 to 2013) of the survey and found losses averaged $US2.5 million and $US11.3 million for confectionery and oilseed hybrids, respectively. Three states, North Dakota, South Dakota, and Nebraska, had sufficient acreage and bird damage …

Wildlife Conservation, Zoos And Animal Protection: A Strategic Analysis, Andrew N. Rowan

Andrew N. Rowan, DPhil

The publication consists of the proceedings of a workshop, sponsored by the Gilman Foundation, and held in April of 1994 at the White Oak Conservation Center in Florida. About thirty participants were invited from zoos, animal protection groups and academic institutions to discuss concepts such as wild, captive and tame; animal well-being in the wild and in zoos; and protecting individuals versus conserving populations. In order to maximize the time engaged in discussion, several individuals were identified to prepare target articles which were distributed to all participants before the meeting. These articles form the main chapters in this book. Other …

The Relationship Of Animal Protection Interests To Animal Damage Management: Historic Paths, Contemporary Concerns And The Uncertain Future, John Hadidian

John Hadidian, PhD

More than a decade ago Schmidt (1989) called for consideration of animal welfare to become a "firstorder" decision rule in wildlife management concerns, including animal damage control. Although there has been movement in that direction, this clearly has not yet come to pass. This paper takes a brief look at the interests we call animal damage management, animal welfare and protection, animal rights, and environmentalism in order to speculate about their shared concerns and the uncertain future before them. Since animal damage and the management of that damage cannot be abstracted from the environmental context in which they occur, this …

Future Prospects For Corn As A Biofuel Crop, Kenneth J. Moore, Douglas L. Karlen, Kendall R. Lamkey

Douglas L Karlen

Ethanol production from corn grain has increased signifi cantly during the past ten years in the US. This increase was driven by government policy guided by the Renewable Fuel Standard (RFS) and embodied in the Volumetric Ethanol Excise Tax Credit and other legislation created to promote a biofuels industry. As corn grain ethanol production approaches the target set out in the RFS, the industry is looking to develop capacity for producing advanced biofuels, primarily from agricultural wastes and dedicated energy crops. The residues remaining following corn harvest have been identifi ed as a voluminous and readily available feedstock for advanced …

Reducing Agriculture's Contribution To Nitrate Contamination Of Surface Waters, Dana L. Dinnes, Cynthia A. Cambardella, Thomas S. Colvin, Daniel B. Jaynes, Douglas L. Karlen

Douglas L Karlen

One of the most prevalent environmental issues throughout the Midwest is nitrate (N03) contamination of surface waters. Non-point source pollution resulting from nitrogen (N) fertilizer use on artificially drained agricultural land has been identified as a major contributor to this problem. High levels of nitratenitrogen (N03-N) in water supplies pose risks to humans and livestock (Tyson et. al., 1992), and has cost some communities millions of dollars for N03 removal. The city of Des Moines, Iowa alone has spent in excess of 5.3 million dollars, not including labor costs, for nitrate treatment of its drinking waters from 1992-1996 (Graham, 1997). …

Hierarchical Modeling And Differential Expression Analysis For Rna-Seq Experiments With Inbred And Hybrid Genotypes, Andrew Lithio, Dan Nettleton

Dan Nettleton

The performance of inbred and hybrid genotypes is of interest in plant breeding and genetics. High-throughput sequencing of RNA (RNA-seq) has proven to be a useful tool in the study of the molecular genetic responses of inbreds and hybrids to environmental stresses. Commonly used experimental designs and sequencing methods lead to complex data structures that require careful attention in data analysis. We demonstrate an analysis of RNA-seq data from a split-plot design involving drought stress applied to two inbred genotypes and two hybrids formed by crosses between the inbreds. Our generalized linear modeling strategy incorporates random effects for whole-plot experimental …

Automated Bioacoustics: Methods In Ecology And Conservation And Their Potential For Animal Welfare Monitoring, Michael P. Mcloughlin, Rebecca Stewart, Alan G. Mcelligott

Alan G. McElligott, PhD

Vocalizations carry emotional, physiological and individual information. This suggests that they may serve as potentially useful indicators for inferring animal welfare. At the same time, automated methods for analysing and classifying sound have developed rapidly, particularly in the fields of ecology, conservation and sound scene classification. These methods are already used to automatically classify animal vocalizations, for example, in identifying animal species and estimating numbers of individuals. Despite this potential, they have not yet found widespread application in animal welfare monitoring. In this review, we first discuss current trends in sound analysis for ecology, conservation and sound classification. Following this, …

Introduction: Social-Ecological Resilience And Law, Ahjond S. Garmestani, Craig R. Allen, Craig Anthony Arnold, Lance H. Gunderson

Craig Anthony (Tony) Arnold

Environmental law is intimately connected to ecological concepts and understanding. The legal instruments, institutions, and administration of law in the United States are predicated on assumptions that nature is globally stable and that the inherent variability in ecological systems is bounded. This current legal framework is based upon an understanding of ecological systems operating near an equilibrium, or if disturbed, moving back toward an equilibrium. Such assumptions make much current environmental law ill-suited for many pressing environmental issues (Ruhl 1999; Garmestani et al. 2009; Craig 2010; Verchick 2010; Benson and Garmestani 2011). Emerging environmental challenges, such as cross-boundary water governance …

Quantifying Uncertainty And Trade-Offs In Resilience Assessments, Craig R. Allen, Hannah E. Birgé, David G. Angeler, Craig A. Arnold, Brian C. Chaffin, Daniel A. Decaro, Ahjond S. Garmestani, Lance Gunderson

Craig Anthony (Tony) Arnold

Several frameworks have been developed to assess the resilience of social-ecological systems, but most require substantial data inputs, time, and technical expertise. Stakeholders and practitioners often lack the resources for such intensive efforts. Furthermore, most end with problem framing and fail to explicitly address trade-offs and uncertainty. To remedy this gap, we developed a rapid survey assessment that compares the relative resilience of social-ecological systems with respect to a number of resilience properties. This approach generates large amounts of information relative to stakeholder inputs. We targeted four stakeholder categories: government (policy, regulation, management), end users (farmers, ranchers, landowners, industry), agency/public …

Barriers And Bridges To The Integration Of Social–Ecological Resilience And Law, Olivia Odom Green, Ahjond S. Garmestani, Craig R. Allen, Lance H. Gunderson, J.B. Ruhl, Craig A. Arnold, Nicholas A.J. Graham, Barbara Cosens, David G. Angeler, Brian C. Chaffin, C.S. Holling

Craig Anthony (Tony) Arnold

There is a fundamental difference between the ways in which ecologists and lawyers view uncertainty: in the study of ecology, uncertainty provides a catalyst for exploration, whereas uncertainty is antithetical to the rule of law. This issue is particularly troubling in environmental management, where the tensions between law and ecology become apparent. Rather than acknowledge uncertainties in management actions, legal frameworks often force a false sense of certainty in linking cause and effect. While adaptive management has been developed to deal with uncertainty, laws and legal wrangling can be obstacles to implementation. In this article, we recommend resilience-based governance – …

Modeling Spatial And Temporal Variation In Natural Background Specific Conductivity, John Olson, Susan M. Cormier

John Olson

Predicting Combined Effects Of Land Use And Climate Change On River And Stream Salinity, John Olson

John Olson

Tiered Approaches In Analyzing Rice Field Pesticide Fate And Transport For Ecological Risk Assessment, Ruoyu Wang

Ruoyu Wang

No abstract provided.

Climate Change, Cattle, And The Challenge Of Sustainability In A Telecoupled System In Africa, Tara S. Easter, Alexander K. Killion, Neil H. Carter

Neil H. Carter

Information, energy, and materials are flowing over greater distances than in the past, changing the structure and feedbacks within and across coupled human and natural systems worldwide. The telecoupling framework was recently developed to understand the feedbacks and multidirectional flows characterizing social and environmental interactions between distant systems. We extend the application of the telecoupling framework to illustrate how flows in beef affect and are affected by social-ecological processes occurring between distant systems in Africa, and how those dynamics will likely change over the next few decades because of climate-induced shifts in a major bovine disease, trypanosomosis. The disease is …

Cropland Expansion Into Prairie Pothole Wetlands, 2001-2010, Carol A. Johnston

Carol Johnston

No abstract provided.

The Role Of Environmental Filtering In Structuring Appalachian Tree Communities: Topographic Influences On Functional Diversity Are Mediated Through Soil Characteristics, Julia I. Chapman, Ryan W. Mcewan

Ryan McEwan

Identifying the drivers of community assembly has long been a central goal in ecology, and the development of functional diversity indices has provided a new way of detecting the influence of environmental gradients on biotic communities. For an old-growth Appalachian forest, we used path analysis to understand how patterns of tree functional diversity relate to topography and soil gradients and to determine whether topographic effects are mediated through soil chemistry. All of our path models supported the idea of environmental filtering: stressful areas (high elevation, low soil moisture, low soil nutrients) were occupied by communities of low functional diversity, which …

Brian Burke.Jpg

Dr. Brian Burke

Toward A Synthesis Of Conservation And Animal Welfare Science, David Fraser

David Fraser, PhD

Conservation biology and animal welfare science are multidisciplinary fields of research that address social concerns about animals. Conservation biology focuses on wild animals, works at the level of populations, ecological systems and genetic types, and deals with threats to biodiversity and ecological integrity. Animal welfare science typically focuses on captive (often domestic) animals, works at the level of individuals and groups, and deals with threats to the animals’ health and quality of life. However, there are many areas of existing or potential overlap: (i) many real-life problems, such as environmental contamination, urban development and transportation, create problems for animals that …

Rating Harms To Wildlife: A Survey Showing Convergence Between Conservation And Animal Welfare Views, S. Dubois, D. Fraser

David Fraser, PhD

Human activities may cause conservation concerns when animal populations or ecosystems are harmed and animal welfare concerns when individuals are harmed. In general, people are concerned with one or the other, as the concepts may be regarded as separate or even at odds. An online purposive survey of 339 British Columbians explored differences between groups that varied by gender, residency, wildlife engagement level and value orientation (conservation-oriented or animal welfare-oriented), to see how they rated the level of harm to wildlife caused by different human activities. Women, urban residents, those with low wildlife engagement, and welfare-orientated participants generally scored activities …

Harnessing Wastewater For Renewable Energy (2013-2), Aaron Adalja, Chalida U-Tapao

Aaron Adalja

This case study explores the options for using wastewater to produce renewable energy in the context of a public wastewater treatment plant. It provides an opportunity for students to synthesize knowledge from resource economics, engineering, environmental science, agriculture, and public policy to develop a transdisciplinary approach to a socio-environmental issue. The case is designed for upper division undergraduate courses in resource economics or environmental engineering, but several modifications are provided graduate course applications. Students assume the role of a newly hired analyst at a consulting firm in Washington, DC, that specializes in renewable energy solutions. They are charged with proposing …

A Smartphone-Based Device For Measuring Soil Organic Matter, Meng Lu

Meng Lu

The project evaluated the potential of utilizing a smartphone-based system for the in-field analysis of Soil Organic Matter. Although it demonstrated that the performance of the smartphone-based spectrometer can be comparable to commercial spectrometers, the results suggest that it is challenging to identify the spectral “signatures” of the SOM due to the morphology and moisture variation of soil samples.

Winter Grazing Management, Stephen K. Barnhart, James R. Russell, Douglas L. Karlen, Michael J. Tidman

Douglas L Karlen

Why winter grazing? Beef cow herd and sheep flock records show that winter feeding costs are livestock producers' single largest production expense. Managing through winter weather while keeping feeding costs low is an essential part of maintaining a profitable operation. Iowa's climate generally allows forage growth only during a 7-to-8 month period. Extending the grazing of this forage--even an extra 3 or 4 weeks in late autumn and winter--is an economical way to maintain or increase livestock profitability. Some producers extend the grazing season by using stockpiled forage, whereas others use crop residue, and many combine the use of stockpiled …

Assessing Public Health Burden Associated With Exposure To Ambient Black Carbon In The United States, Ying Li, Daven K. Henze, Darby Jack, Barron H. Henderson, Patrick L. Kinney

Ying Li

Black carbon (BC) is a significant component of fine particulate matter (PM2.5) air pollution, which has been linked to a series of adverse health effects, in particular premature mortality. Recent scientific research indicates that BC also plays an important role in climate change. Therefore, controlling black carbon emissions provides an opportunity for a double dividend. This study quantifies the national burden of mortality and morbidity attributable to exposure to ambient BC in the United States (US). We use GEOS–Chem, a global 3-D model of atmospheric composition to estimate the 2010 annual average BC levels at 0.5 x 0.667° resolution, and …

Winter Rye Cover Crop Biomass Production, Degradation, And N Recycling, J. L. Pantoja, J. E. Sawyer, D. W. Barker

John E. Sawyer

Winter rye (Secale cereale L.) as a cover crop can take up residual inorganic N between annual row crops and therefore be used to help reduce NO3 -–N loss from fields and movement to water systems. However, does the rye N uptake affect N recycling to soil and add to plant available N? The rye carbon:nitrogen (C:N) ratio could also influence N recycling. The objectives of this study were to evaluate rye biomass degradation and N recycling after spring rye termination in a no-till corn (Zea mays L.) - soybean [Glycine max. (L.) Merr.] rotation. A two year experiment (2010-2011) …

Adrift In A Sea Of Information About Sustainable Seafood: The Maine Consumer Perspective, Catherine V. Schmitt

Catherine Schmitt

The desire for a sustainable seafood industry that protects the environment and the future of fishing is certainly of interest to consumers, but even here there are conflicting standards, as Catherine Schmitt explores in this article.

Assessing The Potential To Decrease The Gulf Of Mexico Hypoxic Zone With Midwest Us Perennial Cellulosic Feedstock Production, Andy Vanloocke, Tracy E. Twine, Christopher J. Kucharik, Carl J. Bernacchi

Andy VanLoocke

The goal of this research was to determine the changes in streamflow, dissolved inorganic nitrogen (DIN) leaching and export to the Gulf of Mexico associated with a range of large-scale dedicated perennial cellulosic bioenergy production scenarios within in the Mississippi–Atchafalaya River Basin (MARB). To achieve this goal, we used Agro-IBIS, a vegetation model capable of simulating the biogeochemistry of row crops, miscanthus and switchgrass, coupled with THMB, a hydrology model capable of simulating streamflow and DIN export. Simulations were conducted at varying fertilizer application rates (0–200 kg N ha -1) and fractional replacement (5–25%) of current row crops with miscanthus …

Expression Of Cyanobacterial Fbp/Sbpase In Soybean Prevents Yield Depression Under Future Climate Conditions, Iris H. Kohler, Ursula M. Ruiz-Vera, Andy Vanloocke, Michell L. Thomey, Tom Clemente, Stephen P. Long, Donald R. Ort, Carl J. Bernacchi

Andy VanLoocke

Predictions suggest that current crop production needs to double by 2050 to meet global food and energy demands. Based on theory and experimental studies, overexpression of the photosynthetic enzyme sedoheptulose-1,7-bisphosphatase (SBPase) is expected to enhance C3 crop photosynthesis and yields. Here we test how expression of the cyanobacterial, bifunctional fructose-1,6/sedoheptulose-1,7-bisphosphatase (FBP/SBPase) affects carbon assimilation and seed yield (SY) in a major crop (soybean, Glycine max). For three growing seasons, wild-type (WT) and FBP/SBPase-expressing (FS) plants were grown in the field under ambient (400 μmol mol−1) and elevated (600 μmol mol−1) CO2 concentrations [CO2] and under ambient and elevated temperatures (+2.7 …

A Realistic Meteorological Assessment Of Perennial Biofuel Crop Deployment: A Southern Great Plains Perspective, Melissa Wagner, Meng Wang, Gonzalo Miguez-Macho, Jesse Miller, Andy Vanloocke, Justin E. Bagley, Carl J. Bernacchi, Matei Georgescu

Andy VanLoocke

Utility of perennial bioenergy crops (e.g., switchgrass and miscanthus) offers unique opportunities to transition toward a more sustainable energy pathway due to their reduced carbon footprint, averted competition with food crops, and ability to grow on abandoned and degraded farmlands. Studies that have examined biogeophysical impacts of these crops noted a positive feedback between near-surface cooling and enhanced evapotranspiration (ET), but also potential unintended consequences of soil moisture and groundwater depletion. To better understand hydrometeorological effects of perennial bioenergy crop expansion, this study conducted high-resolution (2-km grid spacing) simulations with a state-of-the-art atmospheric model (Weather Research and Forecasting system) dynamically …