Life Sciences Commons^™

Automated Tree Mortality Detection Using Ubiquitously Available Public Data, Michael T. Huggins

Master's Theses

Understanding the dynamic interplay between fire severity, topography, and tree mortality, is crucial for predicting future forest dynamics and enhancing resilience against climate change-induced wildfire regimes. This thesis develops a multi-sensor approach for automated estimation of tree mortality, then applies it to examine trends in tree mortality over a six-year period across a fire affected study site in the Trinity River basin in Northern California. The Random Forest model uses publicly available USGS 3D Elevation Program Lidar (3DEP) and NAIP imagery as inputs and is likely to be easily adaptable to other landscapes. The model had a Receiver Operating Characteristic …

Fire Effects On Soil Organic Matter In The Creek Fire, Gracie E. Doolin

Master of Science in Environmental Sciences and Management Projects

Wildfires have increased in frequency and severity over the past few decades due to the increased concertation of CO2 emissions from anthropogenic influence. Soil carbon (C) sequestration has been identified as a climate change mitigation strategy; however, the influx of large-scale wildfires has accelerated landscape processes such as erosion, reducing soil aggradation, and soil C and nitrogen (N) protection. This trend is highlighted by the Creek Fire that occurred in September 2020 and burned 379,895 acres in the Sierra National Forest. This research is designed to close the knowledge gap regarding the impact of burn severity on soil organic matter …

Analysis And Installation Of A Demonstration Agroforestry Orchard For Californian Mediterranean Plant Communities, Brandon Hurd

Master of Science in Environmental Sciences and Management Projects

Climate-appropriate agroforestry can provide low-input food security and ecosystem services for local Californian Mediterranean climates, while conserving natural resources (e.g., water, nitrogen, etc.). This project showcases a variety of agroforestry methods for five common plant communities of California and other analogous Mediterranean climates at the CAFES Experimental Farm on the campus of Cal Poly San Luis Obispo. Plant community species and their ethnobotanical uses were analyzed to mimic and incorporate aspects of native flora. Agricultural plants were also characterized to represent each of the five selected plant communities. GIS was used to assess the project site for soil, slope, and …

Vermicompost Versus Traditional Compost Amendments Leads To Different Soil Health Outcomes In A Mediterranean Vineyard, Elizabeth L. Luck

Master of Science in Environmental Sciences and Management Projects

Compost application has become a common practice in vineyard management to increase soil and crop health, however, the environmental externalities such as greenhouse gas emissions (GHG) from cropping systems that utilize organic fertilizers, such as compost, is uncertain. Vermicompost, which is compost created through the digestion of organic matter by earthworms, and its related ‘extract’ are commonly thought to provide more benefits for soil and crop health compared to standard compost. However, organic fertilizers such as vermicompost, vermicompost extract, and compost have not been compared in their effects on soil health in Mediterranean vineyards. In this two-year study, I assessed …

Developing A Miniature Smart Boat For Marine Research, Michael Isaac Eirinberg

Computer Engineering

This project examines the development of a smart boat which could serve as a possible marine research apparatus. The smart boat consists of a miniature vessel containing a low-cost microcontroller to live stream a camera feed, GPS telemetry, and compass data through its own WiFi access point. The smart boat also has the potential for autonomous navigation. My project captivated the interest of several members of California Polytechnic State University, San Luis Obispo’s (Cal Poly SLO) Marine Science Department faculty, who proposed a variety of fascinating and valuable smart boat applications.

Climate Adaptation And Water Conservation Decision-Making In Paso Robles, California Vineyards, Christopher R. Klier

Master's Theses

This paper examines vineyard perceptions and adoption of climate change adaptation and water conservation measures in the Paso Robles American Viticultural Area (AVA). A survey was distributed to all 220 vineyards and vineyard management companies that operate in the AVA, with a 53.64% response rate. The objective of the survey was to determine vineyard manager and owner attitudes towards climate change and adaptation, as well as their perceptions of how these threats would impact their operation. A second objective was to document the current level of water conservation and climate adaptation while identifying the barriers and opportunities for further adoption …

Eelgrass (Zostera Marina) Population Decline In Morro Bay, Ca: A Meta-Analysis Of Herbicide Application In San Luis Obispo County And Morro Bay Watershed, Tyler King Sinnott

Master's Theses

The endemic eelgrass (Zostera marina) community of Morro Bay Estuary, located on the central coast of California, has experienced an estimated decline of 95% in occupied area (reduction of 344 acres to 20 acres) from 2008 to 2017 for reasons that are not yet definitively clear. One possible driver of degradation that has yet to be investigated is the role of herbicides from agricultural fields in the watershed that feeds into the estuary. Thus, the primary research goal of this project was to better understand temporal and spatial trends of herbicide use within the context of San Luis …

Sensory Stressors Impact Species Responses Across Local And Continental Scales, Ashley A. Wilson

Master's Theses

Pervasive growth in industrialization and advances in technology now exposes much of the world to anthropogenic night light and noise (ANLN), which pose a global environmental challenge in terrestrial environments. An estimated one-tenth of the planet’s land area experiences artificial light at night — and that rises to 23% if skyglow is included. Moreover, anthropogenic noise is associated with urban development and transportation networks, as the ecological impact of roads alone is estimated to affect one-fifth of the total land cover of the United States and is increasing in space and intensity. Existing research involving impacts of light or noise …

Valorization Of Carrot Processing Waste, Alexandra M. Duval

Master's Theses

Commercial carrot processors produce up to 175,000 tons of carrot waste annually. Carrot Mash (CM) is the term referring to the waste by-product of peeled baby carrot processing. Transportation of carrot processing waste is expensive due to its high- water content (approx. 83-95%). High in bioactive compounds (carotenoids) and dietary fibers, it is expected that its conversion into a value-added by-product is of interest to the carrot processing industry. Hemicellulose-rich plant materials have proven to be a source of oligosaccharides, which are known for their beneficial prebiotic activity. The objectives of this research were to: 1) determine the effect of …

Effectiveness Of Windrow Composting Methodology In Killing A Thermo-Tolerant Species Of Salmonella During Mortality Composting, Spencer Gabriel Myers

Master's Theses

In a large agricultural operation, such as the one at Cal Poly San Luis Obispo, disposal of deceased animals is an immense issue. The cost of transporting and rendering every dead animal is inhibitory to the general function of the agricultural operations and their thin budget. Therefore, we propose that composting mortalities could be an economical alternative. Composting is a recognized method for taking animal waste products along with carbon waste and turning it into a pathogen-free, nutrient-rich topsoil. Carcass composting is in fact performed in other countries and states to varying degrees of success. However, the California EPA limits …

Quantifying The Environmental Performance Of A Stream Habitat Improvement Project, Cody Morse

Master's Theses

River restoration projects are being installed worldwide to rehabilitate degraded river habitat. Many of these projects focus on stream habitat improvement (SHI), and an estimated 60%of the 37,000 projects listed in the National River Restoration Science Synthesis Program focus on SHI for salmon and trout species. These projects frequently lack a sufficient monitoring program or account for the environmental costs associated with SHI. The present study used life cycle assessment (LCA) techniques and topographic effectiveness monitoring to quantify environmental costs on the basis of geomorphic change. This methodology was a novel approach to assessing the cost-benefit relationship of SHI. To …

Agriculture In The Classroom Farm Day Lesson Plan, Tessa Nicole Thompson

Agricultural Education and Communication

Nontraditional educational programs have been proclaimed desirable by many teachers, and proven effective through data collection and feedback (Coombs and Ahmed, 1974). Of the more popular unconventional educational programs, outside learning activities are commonly implemented as they are not only advantageous to students, but to teachers as well (Cengelci, 2013; Knoblock, 2008). Though nontraditional, much thought must be put into creating lesson plans for these educational programs.

El Dorado County’s Agriculture in the Classroom program utilizes nontraditional outdoor learning activities to conduct “Farm Day.” This lesson plan, created for Farm Day, is to teach third graders the importance of composting …

Effects Of Habitat Restoration On Soil Retention On Santa Rosa Island, Michael Perez, Kathryn Mceachern, Ken Niessen

STAR Program Research Presentations

Ranching began on Santa Rosa Island in the 1840’s, consequently introducing nonnative megafauna that put novel selective grazing pressures on endemic plant species. Their movement patterns also altered substrate integrity as the land became denuded of any stabilizing vegetation. Dense groves of island oak (Q. tomentella) are known to aid in sediment deposition and retention. The groves also function to collect water during periods of intense fog common to the island. This experiment sought to determine whether sediment is being lost or deposited on a ridge in the middle of the island containing a grove of Q. tomentella …

Weights And Balances: Integrating Models For Prevention And Response To Southern California Offshore Oil Spills, Carmen Watts Clayton, Amoret Bunn

STAR Program Research Presentations

Licensing offshore oil and gas reserves in the United States waters are overseen by the U.S. Department of the Interior’s Bureau of Safety and Enforcement (BSEE). The licensing application includes planning for any worst-case oil spill scenario between BSEE and the applicant based on lessons learned from historic offshore spills such as the Deepwater Horizon (2010), Exxon Valdez (1989), and the Union Oil Platform Blowout (1969). The process for planning to respond to oil spills involves coordination with multiple agencies, trustees, and stakeholders to ensure that oil spill responses consider multiple factors, including ecologically sensitive species, commercial transportation and fisheries, …

Testing Predictions Used To Build An Agrivoltaics Installation On A Small-Scale Educational Model, Katie Kinney, Rebecca Minor, Greg Barron-Gafford

STAR Program Research Presentations

Models are valuable tools for explaining and testing systems. Small-scale models can be especially useful for educational purposes. For models to be useful, they have to accurately depict the larger system that they are describing. A novel man-made system, known as an agrivoltaic structure, is being constructed at Biosphere 2 near Oracle, Arizona. The word agrivoltaic is a combination of agriculture and photovoltaics, or solar farming. My research involved creating a small-scale version of this system for educational purposes. The model of this system tested two predictions: that plants will grow better in the shade of a panel and that …

The Effect Of Drought On Stomatal Conductance In The Biosphere 2 Rainforest, Justin Gay, Joost Van Haren

STAR Program Research Presentations

Drought is a major climate change concern for the Earth’s rainforests; however little is currently known about how these forests and individual plants will respond to water stress. At the individual level, the ability of plants to regulate their stomatal conductance is an important preservation mechanism that helps to cool leaves, regulate water loss, and uptake carbon dioxide. At the ecosystem level, transpiration in rain forests is a major contributor to the feedback loop that returns moisture to the atmosphere for continued rains. Nearly 60% of atmospheric moisture in the Amazon rain forests has been traced back to origins of …

Evaluation Of Anthropogenic Marine Debris And Sargassum Fluitans And Its Potential Impact On Sea Turtle Hatchlings At Sandy Point National Wildlife Refuge, Christina Macmillan

STAR Program Research Presentations

Anthropogenic debris, particularly plastic, has become a significant threat for marine species with the increased use of plastics over the years. Marine birds and sea turtles, mostly green, loggerhead and leatherback turtles, are especially vulnerable to mistaking plastic debris for food and ingesting it. There has been a rise in the incidence of turtles having plastic fragments in their GI tracts; even small amounts of plastic may have major long-term health and reproductive effects. On the nesting beaches, both adults and hatchlings may become entangled in debris or have trouble navigating around beach debris during their crawl to the sea. …

Radiocarbon Isotopic Classification Of Deep Tropical Forest Soils, Brooke Butler, Karis J. Mcfarlane, Jennifer Pett-Ridge, Katherine A. Heckman

STAR Program Research Presentations

Tropical forest soils have an important role in global carbon (C) stocks. Small changes in the cycling of C could drastically affect atmospheric carbon dioxide (CO2) concentrations and active cycling of carbon in a forest community. Currently, little is understood of how tropical forest soils will respond to the increasing global temperatures. To examine the effects of warming/ drought on losses of older versus younger soil C pools, we implemented radiocarbon (14C) isotopic characterization of various soil plot samples and depths from the Luquillo Experimental Forest, Puerto Rico. 14C was measured using Accelerated Mass Spectrometry (AMS) from catalytically condensed carbon …

Methane Production By A Packed-Bed Anaerobic Digester Fed Dairy Barn Flush Water, Sean Richard Thomson

Master's Theses

Packed-bed digesters are an alternative to covered lagoon digesters for methane production and anaerobic treatment of dilute wastewaters such as dairy barn flush water. The physical media of packed-beds retain biofilms, often allowing increased treatment rates. Previous studies have evaluated several types of media for digestion of dilute wastewaters, but cost and media fouling have setback commercial development. A major operational cost has been effluent recirculation pumping.

In the present effort, a novel approach to anaerobic digestion of flush dairy water was developed at pilot-scale: broken walnut shells were used as a low-cost packed-bed medium and effluent recirculation was replaced …

Salinity And Temperature Distribution Of Jellyfish In The San Francisco Estuary, Trisha Huynh, Brooke Bemowski, Lindsay Sullivan, Wim Kimmerer

STAR Program Research Presentations

Jellyfish are generally characterized by their jelly-like bodies and internal lining (two tissue layers). They found both in the phylum Ctenophora and the phylum Cnidaria. Ctenophores differ from cnidarians primarily due to the rows of “combs”, or cilia, which are used for transportation. Additionally, ctenophores possess sticky cells while cindarians possess stinging cells. Jellyfish depend on zooplankton (small floating aquatic animals) as a food source; as a result, they are potential competitors and predators to plankton-eating fish and may negatively impact fish populations.

As recently as 1950, jellyfish have entered the San Francisco Bay from the Mediterranean Sea (probably …

Growing Conditions For Algae, Angeles Mora, Tamar Melkonian, Alejandro Calderon-Urrea

STAR Program Research Presentations

With the growing demands of water in California and the increasing cost of fossil fuels to operate water-cleaning equipment, Algae was cultivated in different concentrations of Nitrogen, Phosphorus, and Potassium (NPK) during different trails to identify the best growing conditions for the removal water contaminates. Before testing algae in waste water, the Algae: Dunaliella Primolecta, Chlorella Vulgaris, and Scenedesmus Dimorphus were cultivated in four different media containing distilled water and plant vitamins. The different mediums used include: Orchid Grow More (20-20-20), Miracle Grow (30-10-10), Murashige & Skoog, and Orchid Bloom Boster (11-35-15). As a result of the investigation, the algae, …

Light Pollution Research Through Citizen Science, John Kanemoto

STAR Program Research Presentations

Light pollution (LP) can disrupt and/or degrade the health of all living things, as well as, their environments. The goal of my research at the NOAO was to check the accuracy of the citizen science LP reporting systems entitled: Globe at Night (GaN), Dark Sky Meter (DSM), and Loss of the Night (LoN). On the GaN webpage, the darkness of the night sky (DotNS) is reported by selecting a magnitude chart. Each magnitude chart has a different density/number of stars around a specific constellation. The greater number of stars implies a darker night sky. Within the DSM iPhone application, a …

Development Of A Public Education Website: Building Bridges Over Water, Angelina Mckee

Agricultural Education and Communication

Website created by Angelina McKee to educate the public about water resource issues. Water is the basic unit of life, water resources are the basis for what societies and ecosystems are founded upon. Water shortages and droughts are more prevalent in our ever-changing world. It is no shock that there are discrepancies between various stockholders on either sides of the dry riverbed. This senior project resulted in the development of a website that addresses global water resources, water use in California, water conservation, and water allocation. The website informs the public on water resources and related issues and will hopefully …

Investigating Meter Scale Topographic Variation As A Factor Of Monterey Pine (Pinus Radiata) Growing Conditions At Kenneth Norris Rancho Marino Reserve, Cambria, Ca, William J. Meyst

Natural Resources Management and Environmental Sciences

Endemic Monterey pine (Pinus radiata) is limited to three locations in California due to its unique ecological requirements. This project was conducted to investigate spatial growth patterns ofMonterey pine over complex ground surfaces. The coastal hills of Rancho Marino Reserve, Cambria, were surveyed using four 150-m transects to quantify and record ground surface features and growing conditions ofMonterey pine. Changes in elevation of each transect were measured using an Abney level. Linear ground surfaces were found at 86% (344 of 400) of survey nodes. Convex ground surfaces were found at 10.5% of survey nodes (42 of 400). Of …

The Effect Of Increasing Rates Of Biochar On Corn Grown In Salinas Clay Loam, Joshua Fridlund

Agricultural Education and Communication

In order to sustain the ever growing global population, agriculture needs to not only increase yields but to increase yields in a way that is sustainable and is either environmentally neutral or has a positive effect on the environment. Biochar offers a solution to this challenge with numerous environmental benefits, as well as agricultural benefits (Lehman and Joseph 2009). The agricultural benefits of biochar have been well documented in tropical climates, with the benefits of biochar for other climates, such as temperate climates and Mediterranean climates, relatively unknown (Blackwell et. al. 2009). To determine the effect of biochar on agricultural …

Common Core 4th Grade Environmental Science Lesson Plans For California Teachers, Gillian Schoenfeld

Natural Resources Management and Environmental Sciences

This project and its analyses were conducted to assist California fourth grade elementary school teachers in adjusting to teaching Common Core standards and science curriculum in their classrooms. The project included the creation of lesson plans, which could be utilized throughout the state of California.

As the Common Core standards, California’s Next Generation Science Standards for K- 12, were just proposed in June of 2013, these lesson plans would help teachers update their lessons and provide them materials and concepts of how to do so. These lessons provide higher-order thinking for students, which is the whole concept of the new …

The Imperative Of Conserving California's Foothill Oak Woodlands, Lauren Phillips

Social Sciences

No abstract provided.

Zooplankton Trophic Ecology In The San Francisco Estuary During Summer As Determined By Stable Isotope Analysis, Kyla Bradylong, Steven Westbrook, Julien Moderan, Wim Kimmerer

STAR Program Research Presentations

Declines in the abundance of several pelagic fish species in the upper San Francisco Estuary have prompted investigation into food web interactions within the estuary and delta (the lower Sacramento and San Joaquin Rivers). This area is characterized by low primary production and pelagic food webs much longer and reticulated than previously thought, implying low efficiency in the energy transfers from primary producers to planktivorous fish. We determined the carbon and nitrogen stable isotope (SI) composition of zooplankton samples collected monthly between June 2012 and February 2013 at eight stations along the salinity gradient. As consumers SI composition reflects that …

Juxtaposing Nasa’S Aeronet Aod With Carb Pm Data Over The San Joaquin Valley To Facilitate Multi-Angle Imaging Spectroradiometer (Misr) Pm Pollution Research, John Kanemoto

STAR Program Research Presentations

Airborne particulate matter (PM) has been shown to increase the risk for asthma, chronic bronchitis, cardiopulmonary complications, and respiratory cell membrane damage/infection/leakage. PM levels are currently analyzed from two perspectives: stationary land-based monitoring (LBM) sites and total Aerosol Optical Depth (AOD) atmospheric column measurements. Both perspectives often leave miles of space between measuring locations and will have a continually increasing cost from introducing/maintaining sites. The Multi-angle Imaging SpectroRadiometer (MISR) satellite team hopes to begin investigating/archiving PM levels comprehensively via inputting MISR AOD measurements into a function/model which predicts the amount of ground level PM.

In the future, multivariable spatial correlations …

Impact Of Hydraulic Fracturing On Ground And Surface Water Resources, Reyna Schenck

Natural Resources Management and Environmental Sciences

The following study examines hydraulic fracturing operations in the United States in relation to groundwater contamination, withdrawals of freshwater resources, and jurisdictional authority over the activity with the purpose of producing objective analysis of research findings. With a growing population and increasing energy needs, hydraulic fracturing is expanding across the nation, as is public concern over the risks to freshwater resources. Because of the difficulty in identifying non-point sources of water pollution, a lack of legitimate water samples representing baseline conditions, and incomplete lists of chemical additives used, study results are often inconclusive as to the correlation between hydraulic fracturing …