Life Sciences Commons^™

Lake Water Chemistry And Local Adaptation Shape Nacl Toxicity In Daphnia Ambigua, Mary Alta Rogalski, Elizabeth S. Baker, Clara M. Benadon

Biology Faculty Publications

Increasing application of road deicing agents (e.g., NaCl) has caused widespread salinization of freshwater environments. Chronic exposure to toxic NaCl levels can impact freshwater biota at genome to ecosystem scales, yet the degree of harm caused by road salt pollution is likely to vary among habitats and populations. The background ion chemistry of freshwater environments may strongly impact NaCl toxicity, with greater harm occurring in ion-poor, soft water conditions. In addition, populations exposed to salinization may evolve increased NaCl tolerance. Notably, if organisms are adapted to their natal lake water chemistry, toxicity responses may also vary among populations in a …

Msis-Glenn: Natural Selection In Wolves Leads To Domesticated Dogs Predicted By Agent-Based Model Simulations, Alex Capaldi, David C. Elzinga

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Fish_Tracking_Receiver_Locations_Molokini.Xlsx, Kevin Weng

Data

Locations of Vemco acoustic tracking receivers used to monitor fish movements. For the publication:https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0283683Decreased tourism during the COVID-19 pandemic positively affects reef fish in a high use marine protected areaKevin C. Weng1*, Alan M. Friedlander2,3, Laura Gajdzik4, Whitney Goodell2,3, Russell T. Sparks4 1 Virginia Institute of Marine Science, William & Mary, 1375 Greate Road, Gloucester Point, Virginia, USA2 Fisheries Ecology Research Lab, Department of Biology, University of Hawai`i at Mānoa, Honolulu, Hawai`i, USA3 Pristine Seas, National Geographic Society, Washington, District of Columbia, USA4 Division of Aquatic Resources, Department of Land and Natural Resources, 1151 Punchbowl Street, Room 330, Honolulu, Hawai`i, …

Diver_Survey_Fhus_Dar_Fish_Data_Molokini.Xlsx, Kevin Weng

Data

Diver surveys of fish community at Molokini.For the publication:https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0283683Decreased tourism during the COVID-19 pandemic positively affects reef fish in a high use marine protected areaKevin C. Weng1*, Alan M. Friedlander2,3, Laura Gajdzik4, Whitney Goodell2,3, Russell T. Sparks4 1 Virginia Institute of Marine Science, William & Mary, 1375 Greate Road, Gloucester Point, Virginia, USA2 Fisheries Ecology Research Lab, Department of Biology, University of Hawai`i at Mānoa, Honolulu, Hawai`i, USA3 Pristine Seas, National Geographic Society, Washington, District of Columbia, USA4 Division of Aquatic Resources, Department of Land and Natural Resources, 1151 Punchbowl Street, Room 330, Honolulu, Hawai`i, USA

Metabolism And Decomposition Rates From 5 Lake Superior Tributaries, 2018-2019, Renn Schipper, Michelle Kelly, Amy Marcarelli

Michigan Tech Research Data

Ecosystem respiration (ER), and decomposition are fundamental processes driving carbon cycling in streams. Most studies examine rates of autotrophic respiration (AR) and heterotrophic respiration (HR) together as ecosystem respiration (ER), even though these two processes are carried out by different groups of organisms, and these processes, alongside decomposition, may respond differently to ongoing changes in environmental factors. We measured metabolism (gross primary production and ER) and decomposition at eight sites in four streams in the Upper Peninsula of Michigan across gradients of canopy cover and DOC concentrations. We estimated AR and HR using quantile regression and used predictive modeling to …

Taxonomic Relationships Of Established Plant Species In The Conterminous United States, Daniel Buonaiuto, Annette Evans, Mathew Fertakos, William Pfadenhauer, Justin Salva, Bethany Bradley

Data and Datasets

Invasion status of non-native vascular plants established in the conterminous United States and their phylogenetic relationships to other invaders at multiple taxonomic resolutions.

Data And R Code For "Gut Transplants From Bees Fed An Antipathogenic Pollen Diet Do Not Confer Pathogen Resistance To Recipients", Rachel T. Yost, Alison E. Fowler, Lynn S. Adler

Data and Datasets

Pollinators are threatened by diverse stressors, including microbial pathogens such as Crithidia bombi. Consuming sunflower pollen dramatically reduces C. bombi infection in the bumble bee Bombus impatiens, but the mechanism behind this medicinal effect is unclear. We asked whether diet mediates resistance to C. bombi through changes in the gut microbiome. We hypothesized that sunflower pollen changes the gut microbiome, which in turn reduces Crithidia infection. To test this, we performed a gut transplant experiment. We fed donor bees either a sunflower pollen treatment or buckwheat pollen as a control treatment, and then inoculated recipient bees with homogenized guts …

Functional Redundancy Of A Non-Native Foundation Species (Eelgrass, Zostera Japonica) Across Intertidal Stress Gradients, S. Maria Garcia

Honors Projects

Non-native species foundation species can alter ecosystems in both positive and negative ways. The creation of habitat can be beneficial to native species when they provide a limiting resource or in a stressful environment. Yet this creation of habitat can also be detrimental by replacing native species and/or facilitating the presence of more non-native species. In Willapa Bay, WA, a non-native foundation species, Zostera japonica, co-exists with the native foundation species Zostera marina. Zostera japonica persists at the higher intertidal in monocultures, the two species overlap in the mid intertidal, and Z. marina persists in monocultures in the low intertidal. …

Historical Plant Sales (Hps) Database: Documenting The Spatiotemporal History Of Plant Sales In The Conterminous U.S., Matthew Fertakos, Evelyn M. Beaury, Neil R. Ford, Nicole L. Kinlock, Denise W. Adams, Bethany Bradley

Data and Datasets

The purpose of this database was to extract, standardize, and geocode the historical trade of vascular and non-vascular plant taxa sold in the horticultural industry of the conterminous United States. The HPS database aims to serve as a resource for analysis of contemporary patterns of introduced and invasive plants as well as for identifying opportunities to expand native plant sales in horticulture. Key data sources that make up this database include the Biodiversity Heritage Library's Seed and Nursery Catalog Collection, and the book Restoring American Gardens by D.W. Adams.

Wetland Walk Vr: Field Ecology In Northeast Florida, Kailan Sindelar

UNF Faculty Research and Scholarship

Join Field Ecologists of the University of North Florida as they begin to monitor the water in swamps and marshes. In this virtual reality experience you will walk through places that are normally too dangerous or harmful to visit, learning about life in these places, how we study it, and how you may connect to it.

Dataset For Controllable Factors Affecting Accuracy And Precision Of Human Identification Of Animals From Drone Imagery, Landon R. Jones, Jared A. Elmore, B. S. Krishnan, Sathishkumar Samiappan, Kristine O. Evans, Morgan B. Pfeiffer, Bradley F. Blackwell, Raymond B. Iglay

College of Forest Resources Publications and Scholarship

Dataset from the results of an experiment to determine how three controllable factors, flight altitude, camera angle, and time of day, affect human identification and counts of animals from drone images to inform best practices to survey animal communities with drones. We used a drone (unoccupied aircraft system, or UAS) to survey known numbers of eight animal decoy species, representing a range of body sizes and colors, at four GSD (ground sampling distance) values (0.35, 0.70, 1.06, 1.41 cm/pixel) representing equivalent flight altitudes (15.2, 30.5, 45.7, 61.0 m) at two camera angles (45° and 90°) and across a range of …

Fire History And Long-Term Carbon Accumulation In Hemi-Boreal Peatlands Companion Dataset, Dominic Uhelski, Evan Kane, Katherine Heckman, Rodney Chimner

Michigan Tech Research Data

This dataset contains peat property data including location, depth, bulk density, organic matter content, and carbon content, infrared spectra, and radiocarbon dates. Peat cores were collected between 2011 and 2019. Analyses were performed between 2018 and 2021. Samples were collected from peatlands in Michigan, Wisconsin, and Minnesota for the purposes of reconstruction of fire history. The data is associated with a yet-to-be-published manuscript to be submitted to Ecosystems.

A README file is included describing the contents of the dataset and all major spreadsheet files contain a Meta worksheet which describes each column of
data.

Ecosystem Service Values Of Gardens In The Yellow River Basin, China, Ge Qianqian, Xu Wenjie, Fu Meichen, Han Yingxin, An Guoqiang, Xu Yuetong

Journal of Arid Land

Studies on the ecosystem service value (ESV) of gardens are critical for informing evidence- based land management practices based on an understanding of the local ecosystem. By analyzing equivalent value factors (EVFs), this paper evaluated the values of 11 ecosystem services of gardens in the Yellow River Basin of China in 2019. High-precision land use survey data were used to improve the accuracy of the land use classification, garden areas, and spatial distribution of the ESVs of gardens. The results showed that garden ecosystem generally had high ESVs, especially in terms of the ESV of food production, which is worthy …

3d Library From Body Size From Unconventional Specimens: A 3d Geometric Morphometrics Approach To Fishes From Ancestral Pueblo Contexts, Jonathan Dombrosky, Thomas F. Turner, Alexandra Harris, Emily Lena Jones

Anthropology Faculty & Staff Publications

Animal body size estimation from zooarchaeological specimens often relies on specific, one-dimensional (i.e., conventional) measures from skeletal elements. Here, we introduce an animal body size estimation technique for archaeological fishes that relies on 3D reference scans and the calculation of centroid size, a standard 3D geometric morphometric proxy measure for organism size. Centroid size-based estimations on whole caudal vertebrae are strongly correlated with a widely accepted measure (i.e., centrum width), but the scalability and flexibility of the centroid size-based approach allows for use on a wide variety of fragmented remains. We use zooarchaeological fish remains (subfamily Ictiobinae) from late pre-Hispanic …

Plant-Soil Feedbacks Help Explain Plant Community Productivity, Andrew Kulmatiski, Jeanette Norton, Leslie E. Forero, Josephine Grenzer

Browse all Datasets

Plant community productivity tends to increase as species richness increases, but the mechanisms behind this biodiversity-productivity relationship are not fully understood. Plant-soil feedbacks (PSF) are a compelling potential mechanism of the biodiversity-productivity relationship because they can explain patterns of both underyielding and overyielding in diverse plant communities. To test the role of plant-soil feedbacks in the biodiversity-productivity relationship we measured all possible plant-soil feedbacks for sixteen species, and used the measured plant-soil feedbacks to predict plant community biomass production. We compared the predicted plant community biomass production to observed biomass production in a paired biodiversity-productivity experiment.

Abundant, Distinct, And Seasonally Dynamic Bee Community In The Canopy-Aerosphere Interface Above A Temperate Forest: Associated Data, Michael J. Cunningham-Minnick, Joan Milam, Brian Kane, H. Patrick Roberts, David I. King

Data and Datasets

This dataset describes bees (Apoidea) sampled with blue vane traps at different heights within and above a temperate forest on the campus of University of Massachusetts Amherst from April through August of 2021, as well as the R-code used for data analyses. Specifically, it includes 2 files: 1) all data on individual specimens, including species identifications, occurrence dates and coordinates, and more information on encounter location and study design, and 2) All code used to generate figures and tables from the data that are included within the published manuscript.

Proteome Database, Mariana Rius, Jackie L. Collier, Joshua Rest

SoMAS Research Data

No abstract provided.

Dataset For: Mapping Fire History And Quantifying Burned Area Through 35 Years Of Prescribed Fire History At An Illinois Tallgrass Prairie Restoration Site Using Gis, Erin G. Rowland-Schaefer, Elizabeth M. Bach, Bill P. Kleiman, Holly P. Jones

Research Datasets

Fire was important to pre-colonization prairies. In today’s remnant and reconstructed prairies, managers frequently employ prescribed fire, a historical management practice that limits woody encroachment, suppresses non-native species, and promotes nutrient cycling. However, few long-term prescribed fire spatial datasets are available for study. We used archived images of prescribed fire maps and hand-drawn fire records to generate a geospatial record of the prescribed fire history at Nachusa Grasslands, a combination remnant and restored preserve in northern Illinois. This record contains maps of the prescribed fire history of the preserve across the entirety of its 35-year history. We used the maps …

Maud Gordon Holmes Arboretum List Of Tree Species, Chloe Mokadam

Maud Gordon Holmes Arboretum List of Tree Species

A database of tree species that links to descriptions/profiles for over 90 tree species.

The database is also available here: Maud Gordon Holmes Arboretum

Sunflower Plantings Reduce A Common Gut Pathogen And Increase Queen Production In Bumble Bee Colonies, Rosemary L. Malfi, Quinn S. Mcfrederick, Giselle Lozano, Rebecca E. Irwin, Lynn S. Adler

Data and Datasets

We evaluated whether plantings of sunflower (Helianthus annuus), whose pollen reduces infection by some pathogens when fed to bees in captivity, lowered pathogen levels and increased reproduction in free-foraging bumble bee colonies (Bombus impatiens). We placed pairs of commercial colonies of B. impatiens at 20 mixed vegetable farms in western Massachusetts between Jul-23 and Oct-6 2019. Flowering resources typically visited by bumble bees were quantified at each farm twice to characterize abundance and diversity. We also visited each farm 3-4 times and at each visit, we (a) recorded colony weights to track growth, (b) collected ~10 …

The Intersection Of Bee And Flower Sexes: Pollen Presence Shapes Sex-Specific Bee Foraging Associations In Sunflower, Justin C. Roch, Rosemary Malfi, Jennifer I. Van Wyk, Deicy Carolina Muñoz Agudelo, Joan Milam, Lynn S. Adler

Data and Datasets

We evaluated whether female or male bees were more abundant on sunflowers, whether female bees were more abundant on pollen-fertile or pollen-sterile sunflower cultivars, and whether the bee community differed between pollen-fertile and pollen-sterile sunflower cultivars. We further evaluated whether bee communities were shaped by local floral resources and landscape composition. We sampled bees visiting sunflowers (Helianthus spp.) from 14 farms in the Connecticut River Valley of western Massachusetts between 25 July to 27 September 2019, typically making two sampling visits to a farm. We also measured floral resource diversity and abundance at the farms, and categorized the landscape types …

Possible Mechanism For First Sperm Precedence In The Hermaphroditic Freshwater Snail Planorbella Trivolvis, Cynthia Norton

Biology Faculty Scholarship

In hermaphrodites the impact of mating order on fertilization success may not only shape the evolution of sperm competition but also influence gender roles during copulation. Planorbella trivolvis exhibit strong first sperm precedence – when snails are presented with two mates 24 hours apart, most eggs (over 80%) are fertilized by the first mate. This outcome may be explained if sperm from the first mate fill the storage organ so there is no room for additional sperm. It may also indicate a switch in gender role so that the focal animal acts as male, and not in the female role …

Anthropogenic And Climatic Factors Interact To Influence Reproductive Timing And Effort, Susannah S. French, Geoffrey Smith

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Reproduction, although absolutely essential to a species’ persistence, is in itself challenging. As anthropogenic change increasingly affects every landscape on Earth, it is critical to understand how specific pressures impact the reproductive efforts of individuals, which directly contribute to the success or failure of populations. However, organisms rarely encounter a single burden at a time, and the interactions of environmental challenges can have compounding effects. Disentangling environmental and physiological pressures is difficult because they are often context-dependent and not generalizable, but long-term monitoring across variable landscapes and weather patterns can improve our understanding of these complex interactions. We tested the …

Data From: Recovery From Discrete Wound Severities In Side-Blotched Lizards (Uta Stansburiana): Implications For Energy Budget, Locomotor Performance, And Oxidative Stress, Susannah S. French, Spencer B. Hudson

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Wounding events (predation attempts, competitive combat) result in injuries and/or infections that induce integrated immune responses for the recovery process. Despite the survival benefits of immunity in this context, the costs incurred may require investment to be diverted from traits contributing to immediate and/or future survival, such as locomotor performance and oxidative status. Yet, whether trait constraints manifest likely depends on wound severity and the implications for energy budget. For this study, food intake, body mass, sprint speed, and oxidative indices (reactive oxygen metabolites, antioxidant capacity) were monitored in male side-blotched lizards (Uta stansburiana) healing from cutaneous wounds of discrete …

Data For "Arch_Covid_Crowding_Vc", Wayne Freimund, Zachary D. Miller

Browse all Datasets

Monitoring of visitor use in Arches National Park to assess social distancing behaviors of visitors during the COVID-19 pandemic.

Data For « Does Invasion Science Encompass The Invaded Range? A Comparison Of The Geographies Of Invasion Science Versus Management In The U.S. », Lara Munro, Bridget Griffin, Brittany Laginhas, Bethany Bradley

Data and Datasets

Data collected from English-language articles published between 1999-2018 on the ten most studied invasive plants in the United States.

Data Repository For "Use Of Redwood Basal Hollows By Bats: A Focus On The Townsend’S Big-Eared Bat On The North Coast Of California", Amon J. Armstrong

Research Data Sets

Loss of roosting resources, either through disturbance or removal, negatively affects bats. Identifying sensitive species and determining roost requirements are critical components in conserving their habitat. Cavity roosting bats on the North Coast of California are known to use hollows in large redwood trees. In this study, we examined the factors determining the use of basal tree hollows by different bat species at eight redwood forest sites in Del Norte, Humboldt, and Mendocino Counties, California. Bat guano was collected from 179 basal hollow roosts from 2017 to 2018, and guano mass was used as an index of roosting activity. Nine …

Sars-Cov-2 Exposure In Wild White-Tailed Deer (Odocoileus Virginianus), Jeffrey C. Chandler, Sarah N. Bevins, Jeremy W. Ellis, Timothy J. Linder, Rachel M. Tell, Melinda Jenkins-Moore, J. Jeffrey Root, Julianna B. Lenoch, Suelee Robbe-Austerman, Thomas J. Deliberto, Tom Gidlewski, Mia Kim Torchetti, Susan A. Shriner

USDA Wildlife Services: Staff Publications

Widespread human SARS-CoV-2 infections combined with human–wildlife interactions create the potential for reverse zoonosis from humans to wildlife. We targeted white-tailed deer (Odocoileus virginianus) for serosurveillance based on evidence these deer have angiotensin-converting enzyme 2 receptors with high affinity for SARS-CoV-2, are permissive to infection, exhibit sustained viral shedding, can transmit to conspecifics, exhibit social behavior, and can be abundant near urban centers. We evaluated 624 prepandemic and postpandemic serum samples from wild deer from four US states for SARS-CoV-2 exposure. Antibodies were detected in 152 samples (40%) from 2021 using a surrogate virus neutralization test. A subset of samples …

Compiled Dataset From The National Reservoir Research Program 1989 Dataset, Nicky M. Faucheux, Leandro E. Miranda

College of Forest Resources Publications and Scholarship

This dataset was compiled from the National Reservoir Research Program 1989 dataset. The NRRP dataset includes data from rotenone and creel studies at reservoirs throughout the continental US during the 1980s. We compiled the species level biomass data into total biomass for each of five trophic guilds (piscivores, detritivores, herbivores, invertivores, and planktivores). This compiled dataset was used to investigate the Cascading Reservoir Continuum Concept across 16 river basins in a study conducted by the 2020 Management of Impounded Rivers Class.

Ecological Repentance, Emmanuel Salem

Williams Honors College, Honors Research Projects

In an age ripe with discovery and analysis regarding anthropogenic pollution and the resultant climate change, a causal ideological explanation is naturally sought. This paper seeks to delve deep into the Christian religion and its relationship to the current climate crisis, as well as discuss whether or not predictions and speculative assertions professed in the famous essay by Lynn White, Historical Roots of our Ecological Crisis, hold up when surveyed with a more critical and thorough evaluative lens. This conversation is undertaken under three core considerations: biblical cosmology, what has happened in the world of Christian bioethics since White’s time, …