Life Sciences Commons^™

Exploring Soil Microbial Dynamics In Southern Appalachian Forests: A Systems Biology Approach To Prescribed Fire Impacts, Saad Abd Ar Rafie

Doctoral Dissertations

Prescribed fires in Southern Appalachian forests are vital in ecosystem management and wildfire risk mitigation. However, understanding the intricate dynamics between these fires, soil microbial communities, and overall ecosystem health remains challenging. This dissertation addresses this knowledge gap by exploring selected aspects of this complex relationship across three interconnected chapters.

The first chapter investigates the immediate effects of prescribed fires on soil microbial communities. It reveals subtle shifts in porewater chemistry and significant increases in microbial species richness. These findings offer valuable insights into the interplay between soil properties and microbial responses during the early stages following a prescribed fire. …

Impact Of Cover Crop Species Diversity On Soil Nutrient Availability And Crop Productivity, Amanda Kramer

Masters Theses

Cover crops provide multiple environmental benefits that improve both soil and water quality; however, farmers only utilize them on approximately 5% of harvested U.S. cropland. Low adoption rates are attributed to yield impact concerns, seed and planting costs, and lack of advocacy. This study, which began in October 2019, assessed the effects of nitrogen rate and cover crop diversity on weed biomass, soil coverage, in-situ residue decomposition, soil nitrogen and phosphorus availability, and cash crop yield to better understand the costs and benefits of cover crop adoption at two locations in Tennessee (Milan and Spring Hill). Treatments were replicated 4 …

Winter Wheat Cover Crop Increased Subsoil Organic Carbon In A Long-Term Cotton Cropping System In Tennessee, Rounak Patra, Debasish Saha, Sindhu Jagdamma

Biosystems Engineering and Soil Science Publications and Other Works

Long-term cover-cropping and no-tillage practices can facilitate soil organic carbon (SOC) accumulation in agroecosystems for soil health and climate mitigation benefits. However, the contribution of these conservation management practices to SOC gain from the subsoil layers is not been extensively studied. To understand this knowledge gap, it is essential to determine the distribution of total SOC and SOC fractions in response to management practices across the soil profile. Therefore, this study was conducted by leveraging a 40-year replicated field experiment in a continuous cotton (Gossypium hirsutum) system. The management treatments examined included three cover crop treatments: 1) hairy vetch, HV …

Influence Of Physical Variability Of Highly Weathered Sedimentary Rock On Nitrate In Area 3 Of The Enigma Field Research Site At Y-12, Erin Kelly

Masters Theses

Uranium processing and waste storage in unlined waste ponds leached contaminants into the groundwater at Y-12, Oak Ridge, Tennessee, from the 1950s to 1980s. Groundwater wells near the S-3 ponds have had the highest nitrate concentrations of groundwater anywhere in the world (>10,000 mg/L). For reference, the maximum contaminant level for nitrate in drinking water set by the U.S. Environmental Protection Agency is 10 mg/L. Since 2012, the ENIGMA (Ecosystems and Networks Integrated with Genes and Molecular Assemblies) group has been characterizing, monitoring, and conducting field experiments to understand the interactions between contaminants, microbes, and the subsurface. The goals …

Carbon Metabolism In Cave Subaerial Biofilms, Victoria E. Frazier

Masters Theses

Subaerial biofilms (SABs) grow at the interface between the atmosphere and rock surfaces in terrestrial and subterranean environments around the world. Multi-colored SABs colonizing relatively dry and nutrient-limited cave surfaces are known to contain microbes putatively involved in chemolithoautotrophic processes using inorganic carbon like carbon dioxide (CO₂) or methane (CH₄). However, the importance of CO₂ and CH₄ to SAB biomass production has not been quantified, the environmental conditions influencing biomass production and diversity have not been thoroughly evaluated, and stable carbon and nitrogen isotope compositions have yet to be determined from epigenic cave SABs. …

Influence Of Living Plant Roots And Mycorrhizal Hyphae On Soil Hydraulic Properties, Katelyn M. Marcacci

Masters Theses

The interrelationships between vegetation, soil, and water are fundamental in evaluating the projected impacts of global climate change. Many predictive models require soil hydraulic parameters as inputs. As most hydraulic parameter datasets are for repacked soil, the influence of vegetation on hydraulic parameters is not thoroughly understood. Living roots and mycorrhizal fungi cause physicochemical alterations in soils. Quantifying how vegetation influences soil hydraulic parameters is necessary to more accurately simulate soil water dynamics in climate models.

Laboratory experiments were conducted to test if the presence of roots and roots inoculated with mycorrhizal fungi have a significant effect on the saturated …

Influence Of Environmental Conditions And Inundation History On Bacterial Diversity Of Salt Marsh Soils In Southern Louisiana, Brandon M. Bagley

Masters Theses

Diversity patterns and controls on bacterial community composition were investigated from coastal salt marsh soils in southern Louisiana (USA) from 2012 – 2014. These salt marshes are part of an extensive coastal landscape that is experiencing land loss due to subsidence, sea-level rise, and anthropogenic activities, including from the impacts of the Deepwater Horizon oil spill in 2010. Prior to the oil spill, microbiology research focused predominately on biogeochemical roles and not on taxonomic representation in the soils or on understanding the significance of taxonomic diversity at the microbial level to marsh food webs or ecosystem dynamics. The purpose of …

Testing The Temporal Stability Of The Climate Response Of Tree Species At Norris Dam State Park, Tennessee, U.S.A., Allison Elizabeth Ingram

Masters Theses

Temporal stability of the climate-tree growth relationship means that over time, tree species were responding to a specific climate variable and continue to respond to that variable into the present. The stability of this response is important to test prior to attempting to reconstruct past climate. In this study, I sampled oaks (white oak = Quercus alba L. and chestnut oak = Quercus montana Willd.) and pines (Virginia pine = Pinus virginiana Mill. and shortleaf pine = Pinus echinata Mill.) growing in Norris Dam State Park in eastern Tennessee and tested the temporal stability of these species and their potential …

Microbial Extracellular Enzymes In Marine Sediments: Methods Development And Potential Activities In The Baltic Sea Deep Biosphere, Jenna Marie Schmidt

Masters Theses

The deep biosphere is defined as the subsurface ecosystem in which little energy is available to microorganisms and microorganisms can live for thousands of years. Heterotrophic microbes survive in the deep biosphere even though organic matter is limited and highly recalcitrant in nature. Measuring microbial extracellular enzyme activity provides a potential means to evaluate the rate at which microorganisms are performing carbon remineralization in the energy limited sediment beneath the seafloor. Extracellular enzymes breakdown organic compounds so that the nutrients can move inside the cell and be used for energy. This study explored the role extracellular enzymes play in the …

Opportunities In Sustainability: Maize Seeders For The Developing World And Alternative Fertilizers In The United States, Rebecca Mattingly Harman

Masters Theses

Sustainable agricultural systems are needed for both large and small-scale farmers the world over. Central to the sustainability of these systems is the availability of cheap and effective seeders for smallholder farmers and effective utilization of less energy intensive nitrogen sources. In the first two chapters, this thesis considers maize seeders for smallholder use in a Conservation Agriculture system. To sustain the smallholder sector, soil fertility and soil erosion must be addressed and a Conservation Agriculture model seeks to improve soil conditions in agriculture. The technologies available to smallholder farmers, though, need to be tested in a no-till system before …

Bacterial Diversity And Function Within An Epigenic Cave System And Implications For Other Limestone Cave Systems, Kathleen Merritt Brannen-Donnelly

Doctoral Dissertations

There are approximately 48,000 known cave systems in the United States of America, with caves formed in carbonate karst terrains being the most common. Epigenic systems develop from the downward flow of meteoric water through carbonate bedrock and the solutional enlargement of interconnected subsurface conduits. Despite carbonate karst aquifers being globally extensive and important drinking water sources, microbial diversity and function are poorly understood compared to other Earth environments. After several decades of research, studies have shown that microorganisms in caves affect water quality, rates of carbonate dissolution and precipitation, and ecosystem nutrition through organic matter cycling. However, limited prior …

Rare Occurrences Of Free-Living Bacteria Belonging To Sedimenticola From Subtidal Seagrass Beds Associated With The Lucinid Clam, Stewartia Floridana, Aaron M. Goemann

Masters Theses

Lucinid clams and their sulfur-oxidizing endosymbionts comprise two compartments of a three-stage, biogeochemical relationship among the clams, seagrasses, and microbial communities in marine sediments. A population of the lucinid clam, Stewartia floridana, was sampled from a subtidal seagrass bed at Bokeelia Island Seaport in Florida to test the hypotheses: (1) S. floridana, like other lucinids, are more abundant in seagrass beds than bare sediments; (2) S. floridana gill microbiomes are dominated by one bacterial operational taxonomic unit (OTU) at a sequence similarity threshold level of 97% (a common cutoff for species level taxonomy) from 16S rRNA genes; …

Environmental Controls On The Diversity And Distribution Of Endosymbionts Associated With Phacoides Pectinatus (Bivalvia: Lucinidae) From Shallow Mangrove And Seagrass Sediments, St. Lucie County, Florida, Thomas Walters Doty

Masters Theses

Lucinid bivalves are capable of colonizing traditionally inhospitable shallow marine sediments due to metabolic functions of bacterial endosymbionts located within their gills. Because lucinids can often be the dominant sediment infauna, defining their roles in sediment and pore fluid geochemical cycling is necessary to address concerns related to changes in coastal biological diversity and to understanding the sensitivity of threatened coastal ecosystems over time. However, there has been limited research done to understand the diversity and distribution of many lucinid chemosymbiotic systems. Therefore, the goals of this thesis were to evaluate the distribution of Phacoides pectinatus and its endosymbiont communities …

Long-Term Impacts Of Conservation Management Practices On Soil Carbon Storage, Stability, And Utilization Under Cotton Production In West Tennessee, Candace Brooke Wilson

Masters Theses

Biogeochemical cycling of soil carbon (C) is heavily influenced by conservation agricultural (CA) practices. This study examined SOC stability under three CA practices: reduced nitrogen (N) fertilizer application rate, cover cropping, and zero-tillage implemented for 31 years. Respiration rates measured from a 602-day incubation period were fitted to a double-pool first order exponential model of SOC decomposition. The active [respired] SOC pool showed distinct differences between applications of reduced (34N kg ha^-1 [-1]) and high fertilization rates (101N kg ha^-1) combined with tillage, and suggest that high fertilizer applications with conventional tillage allocated more C into a …

Evidence Of Late Quaternary Fires From Charcoal And Siliceous Aggregates In Lake Sediments In The Eastern U.S.A., Joanne P. Ballard

Doctoral Dissertations

The late-glacial transition to the Holocene, 15,000–11,600 cal yr BP, is an enigmatic period of dynamic global changes and a major extinction event in North America. Fire is an agent of disturbance that transforms the environment physically and chemically, and affects plant community composition. To improve understanding of the linkages between fire, vegetation, and climate over the late glacial and Holocene in the eastern U.S., I analyzed lake-sediment cores for charcoal and indicators of wood ash, and compared results to existing pollen records. A new microscopic charcoal record from Anderson Pond, Tennessee revealed high fire activity from 23,000–15,000 cal yr …

Survival And Growth Rate Of Translocated Freshwater Mussels Lampsilis Fasciola And Medionidus Conradicus, Laura L. Pullum

Masters Theses

Freshwater mussels (Family Unionidae and Margaritiferidae) are a widely threatened group of bivalve molluscs, particularly in the Southeastern United States. Translocation of freshwater mussels is an increasingly common conservation method. However, there are relatively few studies that quantitatively investigate the factors influencing translocation success or failure. In October 2013, hundreds of Medionidus conradicus and Lampsilis fasciola were translocated to the Pigeon and Nolichucky Rivers in Tennessee, with an interim partial survey (June 2014) and a full survey (October 2014). In this study, I analyze this field-collected data to determine the mechanism(s) that currently influence the outcomes of Tennessee mussel translocation. …

Reaping The Benefits Of Conservation Tillage: Implications Of Increased Soil Organic Matter And Aggregation In Surface Soils, Kenna Elizabeth Rewcastle

Chancellor’s Honors Program Projects

No abstract provided.

Hydrogeology Of The Little River Animal Agriculture Environmental Research Unit And Impacts Of Dairy Operations On Groundwater, Robert Wesley Hunter

Masters Theses

This thesis describes the development of an integrated hydrogeologic/hydrologic site assessment and groundwater/surface water quality monitoring program at the University of Tennessee – Little River Dairy Farm, located near Townsend, TN. Hydrologic/hydrogeologic investigations of streams and groundwater at the site have been underway for more than 5 years, and these are expected to provide background data for assessing impacts of dairy wastes. The lower half of the ~180 ha site consists of low-relief fields used for row crops, which are underlain by 4 – 9 m of alluvial deposits on top of black shale or limestone that include sinkhole features. …

Genetic Analysis Of Bacterial Gene Variations In Sulfidic Springs And The Influence On Geochemistry, Brendan Joseph Headd

Doctoral Dissertations

Culture-independent methods have revolutionized environmental microbiology and geomicrobiology studies and next-generation sequencing and metagenomics techniques continue to reveal the vast genetic diversity of microorganisms. But, these approaches provide comparatively little quantitative information about the roles that naturally occurring microbial gene variations play in local biogeochemical cycling. The goal of this study was to identify how the physical distribution and genetic diversity of microbial genes within a habitat impact environmental geochemistry by examining the biogeography of 16S rRNA genes and bacterial sulfur oxidation (Sox) genes in terrestrial sulfidic springs. 16S rRNA gene pyrosequences were obtained from microbial mats inhabiting eight sulfidic …

An Investigation Of Stratigraphic Evidence For An Abrupt Climatic Event 8200 Yr Bp In Valle De Las Morrenas, Costa Rica, Brian Thomas Watson

Masters Theses

Lago de las Morrenas 4 (9.498056° [degrees] N, 83.486111° [degrees] W, 3466 m elev.) is the lowest lake in a chain of glacial lakes located in the Valle de las Morrenas, a valley facing almost due north from Cerro Chirripó, the highest peak in the Cordillera de Talamanca in Costa Rica. Coarse resolution analyses of pollen, microscopic charcoal, and loss-on-ignition of a ca. 10,000 year sediment record from Lago de las Morrenas 4 was carried out to complement and extend previous research on the environmental history of the Chirripó highlands and to provide context for high-resolution sampling and analysis of …

Human Decomposition Ecology At The University Of Tennessee Anthropology Research Facility, Franklin Edward Damann

Doctoral Dissertations

The University of Tennessee Anthropology Research Facility (ARF) is well known for its unique history as a site of human decomposition research in a natural environment. It has been integral to our understanding of the processes of human decomposition. Over the last 30 years 1,089 bodies have decomposed at this 1.28 acre facility, producing a density of 850 corpses per acre of land. This project evaluated the abiotic and biotic characteristics of the soil exposed to various levels of human decomposition in order to determine the effect on the physicochemical properties and the indigenous bacterial communities.

Specifically, 75 soil samples …

W229-Interpreting Mehlich 1 And 3 Soil Test Extractant Results For P And K In Tennessee, The University Of Tennessee Agricultural Extension Service

Field & Commercial Crops

The Mehlich 1 and 3 soil test extractants are the most widely used in laboratories of the southern United States today. Tennessee began using the Mehlich 1 extractant in December, 1981. Existing soil test calibration data in Tennessee are based on the Mehlich 1 soil test extractant,1,2 which became available in 1953.

Past Fire Regimes Of Table Mountain Pine (Pinus Pungens L.) Stands In The Central Appalachian Mountains, Virginia, U.S.A., Georgina Deweese

Doctoral Dissertations

Table Mountain pine is an Appalachian endemic that occurs in a patchy distribution from Georgia to Pennsylvania and is prolific at sites with a history of fire disturbance. The purpose of this dissertation was to reconstruct the fire regimes of Table Mountain pine stands in the Jefferson National Forest, Virginia. Sections from firescarred Table Mountain pines were collected at four sites to analyze fire history, while increment cores and stand composition information were collected from macroplots within each fire history site to investigate the possible influence of fires that were more ecologically severe. Results show that fire was frequent before …

Beauveria Bassiana, A Cotton Endophyte With Biocontrol Activity Against Seedling Disease, Mary Ruth Griffin

Doctoral Dissertations

Beauveria bassiana isolate 11-98 is entomopathogenic, endophytic in tomato, and has biocontrol activity against Rhizoctonia solani on tomato. The objectives of this study were to determine 1) if B. bassiana is endophytic in cotton, following seed treatment; 2) if B. bassiana can protect cotton against seedling pathogens; 3) if different conidial rates, applied to seed, alter effectiveness of B. bassiana; and 4) mechanisms of biocontrol used by B. bassiana against plant pathogens. Cotton ‘Delta Pine 436’ seed was inoculated with isolate 11-98 conidia, sown in a gnotobiotic system, and then isolated from surfacesterilized seedlings on selective medium. Using scanning …

Seasonal Forage Availability And Diet Of Reintroduced Elk In The Cumberland Mountains, Tennessee, Jason Lee Lupardus

Masters Theses

The Tennessee Wildlife Resources Agency (TWRA) reintroduced elk (Cervus elaphus manitobensis) into the Cumberland Mountains, Tennessee over a 3-year period beginning in December 2000. We radio-collared 160 elk and monitored them by aerial telemetry from February 2001 to June 2003. Locations (n = 1450) were used in a geographic information system (GIS) to develop a core herd home range (789-ha sampling area) to assess elk seasonal forage use and availability. We monitored diet and resource availability from November 2003 to October 2004 by vegetation sampling and microhistological analysis of feces. Tall fescue (Festuca arundinacea; 35.1%) dominated …

Registros De Sedimentos Lacustres De La Vegetación Del Holoceno Y Historia Del Fuego En El Páramo De Costa Rica. (Lake-Sediment Records Of Holocene Vegetation And Fire History In The Costa Rican Páramos), Sally P Horn, Brandon L. League

Geography Publications and Other Works

We examined pollen, pteridophyte (ferns and fern-allies) spores, and charcoal in a 5.6 m long sediment core from Lago de las Morrenas 1, and charcoal in a 1.1 m long sediment core from Lago Chirripó, to reconstruct postglacial vegetation and fire history in the Chirripó páramo. Lago de las Morrenas 1, the largest lake in the Valle de las Morrenas of Chirripó National Park, is presently surrounded by treeless páramo vegetation and has apparently been so since deglaciation approximately 10,000 radiocarbon years ago. Pollen spectra suggest no pronounced changes in vegetation since ice retreat. Pollen percentages for Gramineae and other …