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Full-Text Articles in Life Sciences
Faces: Diversity-Aware Entity Summarization Using Incremental Hierarchical Conceptual Clustering, Kalpa Gunaratna, Krishnaprasad Thirunarayan, Amit P. Sheth
Faces: Diversity-Aware Entity Summarization Using Incremental Hierarchical Conceptual Clustering, Kalpa Gunaratna, Krishnaprasad Thirunarayan, Amit P. Sheth
Kno.e.sis Publications
Semantic Web documents that encode facts about entities on the Web have been growing rapidly in size and evolving over time. Creating summaries on lengthy Semantic Web documents for quick identification of the corresponding entity has been of great contemporary interest. In this paper, we explore automatic summarization techniques that characterize and enable identification of an entity and create summaries that are human friendly. Specifically, we highlight the importance of diversified (faceted) summaries by combining three dimensions: diversity, uniqueness, and popularity. Our novel diversity-aware entity summarization approach mimics human conceptual clustering techniques to group facts, and picks representative facts from …
Linked Open Social Signals, Pablo N. Mendes, Alexandre Passant, Pavan Kapanipathi, Amit P. Sheth
Linked Open Social Signals, Pablo N. Mendes, Alexandre Passant, Pavan Kapanipathi, Amit P. Sheth
Kno.e.sis Publications
In this paper we discuss the collection, semantic annotation and analysis of real-time social signals from micro-blogging data. We focus on users interested in analyzing social signals collectively for sensemaking. Our proposal enables flexibility in selecting subsets for analysis, alleviating information overload. We define an architecture that is based on state-of-the-art Semantic Web technologies and a distributed publish subscribe protocol for real time communication. In addition, we discuss our method and application in a scenario related to the health care reform in the United States.
Tcruzikb: Enabling Complex Queries For Genomic Data Exploration, Pablo N. Mendes, Bobby Mcknight, Amit P. Sheth, Jessica C. Kissinger
Tcruzikb: Enabling Complex Queries For Genomic Data Exploration, Pablo N. Mendes, Bobby Mcknight, Amit P. Sheth, Jessica C. Kissinger
Kno.e.sis Publications
We developed a novel analytical environment to aid in the examination of the extensive amount of interconnected data available for genome projects. Our focus is to enable flexibility and abstraction from implementation details, while retaining the expressivity required for post-genomic research. To achieve this goal, we associated genomics data to ontologies and implemented a query formulation and execution environment with added visualization capabilities. We use ontology schemas to guide the user through the process of building complex queries in a flexible Web interface. Queries are serialized in SPARQL and sent to servers via Ajax. A component for visualization of the …
A Framework To Support Spatial, Temporal And Thematic Analytics Over Semantic Web Data, Matthew Perry, Amit P. Sheth
A Framework To Support Spatial, Temporal And Thematic Analytics Over Semantic Web Data, Matthew Perry, Amit P. Sheth
Kno.e.sis Publications
Spatial and temporal data are critical components in many applications. This is especially true in analytical applications ranging from scientific discovery to national security and criminal investigation. The analytical process often requires uncovering and analyzing complex thematic relationships between disparate people, places and events. Fundamentally new query operators based on the graph structure of Semantic Web data models, such as semantic associations, are proving useful for this purpose. However, these analysis mechanisms are primarily intended for thematic relationships. In this paper, we describe a framework built around the RDF data model for analysis of thematic, spatial and temporal relationships between …
Rdb2rdf: Incorporating Domain Semantics In Structured Data, Satya S. Sahoo
Rdb2rdf: Incorporating Domain Semantics In Structured Data, Satya S. Sahoo
Kno.e.sis Publications
No abstract provided.
Traveling The Semantic Web Through Space, Theme And Time, Amit P. Sheth, Matthew Perry
Traveling The Semantic Web Through Space, Theme And Time, Amit P. Sheth, Matthew Perry
Kno.e.sis Publications
In this installment of Semantics and Services, we further develop the idea of spatial, temporal, and thematic (STT) processing of semantic Web data and describe the Web infrastructure needed to support it. Starting from Ramesh Jain's vision of the EventWeb as a view of what's possible with a Web that better accommodates all three dimensions of event-related information (thematic, spatial, and temporal), we outline the architecture needed to support it and current research that aims to realize it.
From “Glycosyltransferase” To “Congenital Muscular Dystrophy”: Integrating Knowledge From Ncbi Entrez Gene And The Gene Ontology, Satya S. Sahoo, Kelly Zeng, Olivier Bodenreider, Amit P. Sheth
From “Glycosyltransferase” To “Congenital Muscular Dystrophy”: Integrating Knowledge From Ncbi Entrez Gene And The Gene Ontology, Satya S. Sahoo, Kelly Zeng, Olivier Bodenreider, Amit P. Sheth
Kno.e.sis Publications
Entrez Gene (EG), Online Mendelian Inheritance in Man (OMIM) and the Gene Ontology (GO) are three complementary knowledge resources that can be used to correlate genomic data with disease information. However, bridging between genotype and phenotype through these resources currently requires manual effort or the development of customized software. In this paper, we argue that integrating EG and GO provides a robust and flexible solution to this problem. We demonstrate how the Resource Description Framework (RDF) developed for the Semantic Web can be used to represent and integrate these resources and enable seamless access to them as a unified resource. …
What, Where And When: Supporting Semantic, Spatial And Temporal Queries In A Dbms, Matthew Perry, Amit P. Sheth, Farshad Hakimpour, Prateek Jain
What, Where And When: Supporting Semantic, Spatial And Temporal Queries In A Dbms, Matthew Perry, Amit P. Sheth, Farshad Hakimpour, Prateek Jain
Kno.e.sis Publications
Spatial and temporal data are critical components in many applications. This is especially true in analytical domains such as national security and criminal investigation. The outcome of the analytical process in these applications often hinges on uncovering and analyzing complex relationships between disparate people, places and events. Fundamentally new query operators based on the graph structure of Semantic Web data models, such as semantic associations, are proving useful in these applications. However, these analysis mechanisms are primarily intended for thematic relationships. We describe a framework built around the RDF metadata model for analysis of thematic, spatial and temporal relationships between …
Semantic Analytics Visualization, Leonidas Deligiannidis, Amit P. Sheth, Boanerges Aleman-Meza
Semantic Analytics Visualization, Leonidas Deligiannidis, Amit P. Sheth, Boanerges Aleman-Meza
Kno.e.sis Publications
In this paper we present a new tool for semantic analytics through 3D visualization called “Semantic Analytics Visualization” (SAV). It has the capability for visualizing ontologies and meta-data including annotated web-documents, images, and digital media such as audio and video clips in a synthetic three-dimensional semi-immersive environment. More importantly, SAV supports visual semantic analytics, whereby an analyst can interactively investigate complex relationships between heterogeneous information. The tool is built using Virtual Reality technology which makes SAV a highly interactive system. The backend of SAV consists of a Semantic Analytics system that supports query processing and semantic association discovery. Using a …
Data Processing In Space, Time, And Semantics Dimensions, Farshad Hakimpour, Boanerges Aleman-Meza, Matthew Perry, Amit P. Sheth
Data Processing In Space, Time, And Semantics Dimensions, Farshad Hakimpour, Boanerges Aleman-Meza, Matthew Perry, Amit P. Sheth
Kno.e.sis Publications
This work presents an experimental system for data processing in space, time and semantics dimensions using current Semantic Web technologies. The paper describes how we obtain geographic and event data from Internet sources and also how we integrate them into an RDF store. We briefly introduce a set of functionalities in space, time and semantics dimensions. These functionalities are implemented based on our existing technology for main-memory based RDF data processing developed in the LSDIS Lab. A number of these functionalities are exposed as REST Web services. We present two sample client side applications that are developed using a combination …
Ontoqa: Metric-Based Ontology Quality Analysis, Samir Tartir, I. Budak Arpinar, Michael Moore, Amit P. Sheth, Boanerges Aleman-Meza
Ontoqa: Metric-Based Ontology Quality Analysis, Samir Tartir, I. Budak Arpinar, Michael Moore, Amit P. Sheth, Boanerges Aleman-Meza
Kno.e.sis Publications
As the Semantic Web gains importance for sharing knowledge on the Internet this has lead to the development and publishing of many ontologies in different domains. When trying to reuse existing ontologies into their applications, users are faced with the problem of determining if an ontology is suitable for their needs. In this paper, we introduce OntoQA, an approach that analyzes ontology schemas and their populations (i.e. knowledgebases) and describes them through a well defined set of metrics. These metrics can highlight key characteristics of an ontology schema as well as its population and enable users to make an informed …
Tontogen: A Synthetic Data Set Generator For Semantic Web Applications, Matthew Perry
Tontogen: A Synthetic Data Set Generator For Semantic Web Applications, Matthew Perry
Kno.e.sis Publications
No abstract provided.
Discovering Informative Subgraphs In Rdf Graphs, William H. Milnor, Cartic Ramakrishnan, Matthew Perry, Amit P. Sheth, John A. Miller, Krzysztof Kochut
Discovering Informative Subgraphs In Rdf Graphs, William H. Milnor, Cartic Ramakrishnan, Matthew Perry, Amit P. Sheth, John A. Miller, Krzysztof Kochut
Kno.e.sis Publications
Discovering patterns in graphs has long been an area of interest. In most contemporary approaches to such pattern discovery either quantitative anomalies or frequency of substructure is used to measure the interestingness of a pattern. In this paper we address the issue of discovering informative sub-graphs within RDF graphs. We motivate our work with an example related to Semantic Search. A user might pose a question of the form: ' What are the most relevant ways in which entity X is related to entity Y?' the response to which is a subgraph connecting X to Y. Relevance of the …
Ρ-Queries: Enabling Querying For Semantic Associations On The Semantic Web, Kemafor Anyanwu, Amit P. Sheth
Ρ-Queries: Enabling Querying For Semantic Associations On The Semantic Web, Kemafor Anyanwu, Amit P. Sheth
Kno.e.sis Publications
This paper presents the notion of Semantic Associations as complex relationships between resource entities. These relationships capture both a connectivity of entities as well as similarity of entities based on a specific notion of similarity called ρ-isomorphism. It formalizes these notions for the RDF data model, by introducing a notion of a Property Sequence as a type. In the context of a graph model such as that for RDF, Semantic Associations amount to specific certain graph signatures. Specifically, they refer to sequences (i.e. directed paths) here called Property Sequences, between entities, networks of Property Sequences (i.e. undirected paths), or subgraphs …
Logical Information Modeling Of Web-Accessible Heterogeneous Digital Assets, Kshitij Shah, Amit P. Sheth
Logical Information Modeling Of Web-Accessible Heterogeneous Digital Assets, Kshitij Shah, Amit P. Sheth
Kno.e.sis Publications
This paper introduces the MREF framework for representing and correlating information at a higher semantic level than is possible with Web-based information systems today. The role that metadata plays in this framework is described, together with a metadata based infrastructure to support our media independent information correlation paradigm. To keep it consistent with evolving standards, broader acceptance and ease of implementation, MREF abstraction is structured on top of RDF and XML. Its central role in the context of the InfoQuilt system, for exploiting heterogeneous digital media using a federated and scalable architecture, is briefly described.