Life Sciences Commons^™

Effects Of Enhancement Solution Ph On Fresh And Cooked Color Of Dark-Cutting Beef, Ryan Stackhouse

Graduate Theses and Dissertations

In two experiments, dark-cutting (DC) beef strip loins were used to test the effects of citric acid-enhancement pH on visual and instrumental color of fresh and cooked steaks. Dark cutting and normal pH strip loin were injected to 111% of raw product weight with pH 3.5, 4.0, 4.5, or 5.0 solutions by mixing citric acid in either 0.05% phosphate solution or tap water (Exp 1), or with pH 2.0, 2.5, 3.0, and 3.5 solutions made by mixing citric acid in either a 0.5% orthophosphate solution (PO4) or a 0.5% tripolyphosphate solution (STP) (Exp2). Loin sections were cut into 2.5-cm-thick steaks …

Survey Of Nasal Mites (Acari: Rhinonyssidae, Ereynetidae, Turbinoptidae) In Birds From Three States In The United States, Alexis Danel Hilario Perez

Graduate Theses and Dissertations

Avian nasal mites are obligate endoparasites that spend their entire life in the respiratory system of birds. In North America, bird nasal mites are represented by different unrelated families in three different orders of mites: Rhinonyssidae (Mesostigmata), Ereynetidae (Prostigmata), and the Cytoditidae and Turbinoptidae (Astigmata). The most-diverse and most-abundant family of nasal mites is the Rhinonyssidae, in which mite species may have different levels of host specificity from host orders to families or even species level. Nasal mites in North America have been surveyed in different locations, such as studies ranging from the Gulf Coast of the US to Canada. …

Physiology And Genetics Shape The Microbiome Of A Seabird Species (Oceanodroma Leucorhoa) More Than Environmental And Social Factors, Douglas Steven Pearce

Masters Theses

The microbiome provides multiple benefits to animal hosts that can profoundly impact health and behavior. Microbiomes are well-characterized in humans and animals in controlled settings, yet assessments of wild bird microbial communities remain vastly understudied. This study examines the multiple factors that affect the microbiome of a burrow-nesting Procellariiform bird species, Leach’s storm-petrel. 16S rRNA-based Illumina Mi-Seq analyses are used to assess the composition and structure of bird and burrow-associated bacterial communities. Results indicate that sex and skin site contribute to bird-associated bacterial community variation, and MHC heterozygosity impacts these bacterial assemblages in a sex and site-specific manner, potentially having …

The Application Of Chitosan On An Experimental Infection Of Pseudogymnoascus Destructans Increases Survival In Little Brown Bats, Torin C. Kulhanek

Masters Theses

This research builds upon a previous study conducted that tested the efficacy of chitosan on experimentally-infected bats as a laboratory model of White-nose syndrome. White-nose syndrome is a fungal infection caused by Pseudogymnoascus destructans, formerly known as Geomyces destructans. The pathology of this disease is not yet fully understood, but it is devastating bats throughout Northeastern America and continues to spread. Here we tested multiple application time points and concentrations of chitosan on the wings of experimentally-infected bats and compared them with the controls. We grossly viewed the wings first to get a sense of the amount of …

Effect Of Varying Rumen Degradable And Undegradable Protein On Milk Production And Nitrogen Efficiency In Lactating Dairy Cows Under Summer Conditions, Jeffrey D. Kaufman

Masters Theses

The objective is to determine the effect of reducing nitrogen input through feeding low rumen degradable protein (RDP) and rumen undegradable protein (RUP) proportions on milk production, nitrogen efficiency and metabolism in heat-stressed cows. Forty-eight mid-lactating, Holstein cows were assigned to treatments using a randomized block design in a 2x2 factorial arrangement of treatments (n = 12/treatment). Treatments included two levels of RDP (10 and 8%) and two levels of RUP (8 and 6%). From d 1 to 21, a common diet (10% RDP-8% RUP) was fed to cows followed with their respective treatment diets fed from d 22 to …

Effect Of Omega-3 Polyunsaturated Fatty Acid (N-3 Pufa) Supplementation To Lactating Sows On Growth And Indicators Of Stress In The Post-Weaned Pig, John M. Mcafee

Masters Theses

The first experiment was designed to determine the concentration of protected fish oil product (PFO), as Gromega^TM, to be added that would sufficiently decrease the polyunsaturated fatty acid (PUFA) ratio in the sows’ milk and colostrum. Of the 3 diets tested (0.25%, 0.5% and 1%) with a control (0% PFO), only the 1% PFO diet had an effect on the PUFA concentrations. The docosahexaenoic acid (DHA) concentration tended (P = 0.05) to be greater in the 1% PFO diet for both colostrum and milk samples. A second experiment was designed to …

Follicular Dynamics In Insulin Resistant Mares, Julio Cesar Prado

Masters Theses

Obesity and insulin resistance have been linked to prolonged interovulatory period, aberrations in the estrous cycle, and continuous reproductive activity during the non-breeding season. EMS has been determined to influence the intrafollicular environment of mare ovaries. In humans, insulin resistance has been linked to polycystic ovaries as part of Polycystic Ovarian Syndrome (PCOS). A study was conducted to determine 1) the impact of insulin resistance on follicle growth and size at ovulation, and 2) whether predicted ovulatory follicles respond to hCG administration in Insulin-resistant (IR) mares. Mares were selected for the study based on insulin sensitivity and separated into an …

Alternative Approaches To Improving The Welfare Of Transition Dairy Cows And Their Calves: Use Of Exercise, Randi Alyson Black

Doctoral Dissertations

Transition cows are the cows most susceptible to disease and prevalence has not changed over the past decade. However, increased physical activity during late gestation may represent a management option to improve transition. Therefore, the objectives of this study were to determine the effect of exercise, pasture turnout, or total confinement on 1.) physical fitness and cortisol concentrations during the dry period, 2.) neutrophil function and behavior during the dry period, 3.) horn growth and wear and sole thickness during the dry period 4.) calving behavior and cortisol concentrations at parturition, and 5.) calf performance, behavior, and cortisol concentrations at …

Resource Use Overlap In A Native Grouper And Invasive Lionfish, Joseph Schmidt Curtis

USF Tampa Graduate Theses and Dissertations

Invasive species can severely disrupt biological communities through their interactions with native organisms, yet little is known about the response of marine predators to the establishment of a competitive invasive fish. In the western Atlantic, invasive Indo-Pacific lionfishes (Pterois spp.) may represent a novel competitor to several commercially and ecologically important native species. However, there is a scarcity of empirical research documenting comparative resource use of cohabitant lionfish and native fishes, as well the physiological consequences that may result from interspecific interactions with the invasive species. For this thesis, I conducted two studies designed to elucidate the strength …

Teaching Culinary Skills Using Video Modeling To Individuals With Traumatic Brain Injury, Sarah Castro

USF Tampa Graduate Theses and Dissertations

Individuals with Traumatic Brain Injury (TBI) often need to be taught independent living skills in order to reintegrate into community settings. This study examined the use of video modeling to teach culinary skills to three individuals with TBI. Video modeling is easily accessible, inexpensive, and not reliant on an additional person to directly teach skills. For all three participants, video modeling resulted in increases in cooking skills using a task analysis created for each food item prepared. For one participant, the skills maintained over two weeks and generalized to a novel food. For another participant video modeling was insufficient in …

Whiting Events Off Southwest Florida: Remote Sensing And Field Observations, Jacqueline Long

USF Tampa Graduate Theses and Dissertations

“Whiting” is a term used to describe a sharply defined patch of water that contains high levels of suspended, fine-grained calcium carbonate (CaCO₃). These features are named for their bright (at times white) appearance when compared to surrounding waters, and have been found to occur globally, persisting for multiple consecutive days. Although whitings have been widely studied using chemical, biological, geological, and physical techniques, there has been little effort to document their spatio-temporal distributions in a systematic way, not to mention the lack of consensus on what generates whitings and allows them to persist for days to weeks …

Understanding The Impact Of Commercial Harvest On White Suckers (Catostomus Commersonii) In Maine, Megan A. Begley

Electronic Theses and Dissertations

The State of Maine issues an unlimited number of commercial permits for the harvest of White Suckers Catostomus commersonii in Maine’s inland waters. The fishery provides a necessary source of fresh lobster Homarus americanus bait to coastal communities at a time when other bait sources are scarce. The impacts of the increasing number of permits and subsequent numbers of fishermen on the white sucker population is unknown. The Maine Department on Inland Fisheries and Wildlife (MDIFW) has closed a number of waters due to concerns that overfishing and incidental catch of other fish species may occur.

In Chapter 1, we …

Uncommon/Rare Avian Species Decline And Extirpation In Nested Assemblages Of Northeastern Illinois Wetlands, James M. Mcaley

All Capstone Projects

Baisa found that avian assemblages are highly nested in palustrine emergent wetlands in northeastern Illinois. He measured nestedness by constructing a binary matrix of species presence and absence across sites. Nestedness was also quantified using the Mann-Whitney U-test in his study.

The goal of this project was to sample the wetlands as Baisa had done in his study. By doing so, we will have 2 sampling events, approximately 10 years apart. Nestedness of the wetland communities will be checked, and data compared to that of Baisa. Emergent wetlands in northeastern Illinois were found by Baisa to contain highly nested avian …

Patterns Of Fecal Progestagens, Estrogens, And Androgens Associated With Reproduction In Blue-Throated Piping Guans (Pipile Cumanensis), Leslie Ann Sterling, Helen Clawitter, Corinne P. Kozlowski, Michael Macek, Anne Tieber

Undergraduate Research Symposium Posters

While fecal hormone analyses are routinely employed to monitor reproduction in mammals, few studies have used these techniques for monitoring reproductive events in birds. This study describes the endocrine patterns associated with reproduction in the blue-throated piping guan (Pipile cumanensis), a less threatened relative of the critically endangered Trinidad piping guan (P. pipile). Fecal samples were collected approximately once a week for 3 years from seven female guans and six male guans at the Saint Louis Zoo. Concentrations of fecal progestagens, estrogens, and androgens were quantified using commercially available enzyme immunoassays. Baseline progestagen concentrations for females …

Phylogeny, Systematics And Biogeography Of Short-Tailed Opossums (Didelphidae: Monodelphis), Silvia E. Pavan

Dissertations, Theses, and Capstone Projects

Short-tailed opossums (genus Monodelphis) comprise the most species-rich genus of New World marsupials, with 25 currently recognized species. Monodelphis comprise small, terrestrial species collectively widespread in South America, which makes the group potentially informative about biogeographic processes that have shaped the continental fauna. The genus exhibits striking variation in several phenotypic characters, notably pelage coloration, behavior, and reproductive strategies. This diversity is unique among Neotropical marsupials, and makes the group particularly interesting to investigate the evolution and the adaptive significance of phenotypic trait variation. Despite this potential, missing knowledge on phylogeny and basic taxonomy precludes broader studies on evolution …

The Role Of Individual Cognitive And Behavioral Ontogeny In Organization And Evolution Of Social Systems, Andrew G. Fulmer

Dissertations, Theses, and Capstone Projects

Exploration and explanation of the relationship between individual variation in behavior and the composition and adaptive success of social groups or populations are crucial problems in the fields of behavioral ecology, ethology, and comparative psychology. These questions have been the subject of a longstanding discussion at both the proximate and ultimate levels of inquiry. Adaptive mechanisms explaining social decision making, both in terms of affiliative and competitive partner choices, are at the center of such discussions. Inclusive fitness, kin-selection, handicap or prestige, risk seeking and risk avoiding strategies, pay-to-stay/reward principles, as well as other theories have been proposed and supported …

A Landscape Approach To Determining And Predicting Juvenile Coho Salmon (Oncorhynchus Kisutch) Movement Timing And Growth Patterns Prior To Ocean Entry, Amelia Lee Johnson

Dissertations and Theses

Coho salmon (Oncorhynchus kisutch) rely on unique habitats during the winter season, which may dictate how much individuals may grow and when migration from freshwater rearing habitat to the ocean occurs. Here I analyze movement timing and growth patterns for coho salmon through a field-based study and a literature review. For the field portion, I examined hatchery-stocked juvenile coho salmon across four stream basins in the Russian River watershed, California to determine the relative importance of climate, landscape, and fish size metrics in predicting movement and growth patterns over a winter rearing and spring smolt outmigration time period …

Burt Lake Watershed Planning Project: Biological Management Plan, Jenna Lyons

Honors Projects

In order to provide a management plan for Burt Lake, a survey was conducted from July to August in which potential habitat was surveyed for the reintroduction of Lake Sturgeon (Acipenser fulvescens). This was done so by evaluating physical parameters of Burt Lake and the surrounding tributaries, presence and absence of invasive plants and unknown algae, and presence of crayfish. For sturgeon habitat, sediment and physical properties (light, temperature, pH, turbidity, dissolved oxygen, conductivity) were sampled on 14 sites in Burt Lake . Similar measurements and samples were also taken in 3 sites on each of the surrounding tributaries, with …

Social Ecological Food Systems: Sustainability Lessons From Maine Dairy Networks, Julia B. Mcguire

Electronic Theses and Dissertations

Milk production has played an integral role in the culture, landscape, and economy of Maine’s agriculture. Maine dairy farmers have faced numerous sustainability challenges to economic, environmental, and social aspects of their industry. Like many other complex social ecological systems, the Maine dairy industry faces a gap between scientific knowledge and actionable management or policy. A cultural dichotomy exists between conventional and organic farming. Shifting the focus from this binary, metrics such as social capital may play a key role in solving sustainability issues. Difficulties arise in the governance of complex social ecological systems when the scales of assessment, management, …

Shortnose Sturgeon (Acipenser Brevirostrum) Spawning Potential In The Penobscot River, Maine: Considering Dam Removals And Emerging Threats, Catherine Johnston

Electronic Theses and Dissertations

Dam removals from the Penobscot River in Maine restored access to freshwater habitat critical for the life cycle of endangered shortnose sturgeon. Prior to the dam removals, shortnose sturgeon spawning activity had not been documented. Instead, evidence suggested that individuals emigrated from the Penobscot River to spawn in the Kennebec complex, 140 km away. A central question of this thesis was whether spawning activity would commence in the first two years following dam removal. Consistent with pre-dam removal movement patterns determined using acoustic telemetry, the majority (78%) of tagged individuals emigrated from the Penobscot River at some point over the …

Behavioral Ecology Of Landbird Migrants In A Complex And Changing Flyway System: The Gulf Of Maine, Adrienne J. Leppold

Electronic Theses and Dissertations

In and around the Gulf of Maine, over 300 species of birds have been documented during migration, and tens of millions of songbirds may pass through the region on a single autumn night. Shorelines are widely documented as major migration corridors. There is ample evidence that coastal areas concentrate migrants and many species make overwater movements to and from breeding and wintering grounds. Data collected from radar, banding, and ceilometry studies in the northeast have provided us with evidence that birds migrate along the coast and make overwater movements across the Gulf of Maine and Bay of Fundy during both …

Breeding Season Avian Community Composition And Prey Availability In Eucalyptus And Slash Pine Plantations Of Southwestern Louisiana, Elizabeth J. Messick

Electronic Theses and Dissertations

The increased demand for wood products related to industries such as bioenergy and paper has resulted in a need for a consistent supply of raw materials. Eucalyptus (Eucalyptus spp.) plantations have the potential to boost wood production for pulpwood and biomass feedstocks. Species characteristics such as rapid, indeterminate growth, coppice regrowth, resistance to disease and insects, and tolerance of a range of environmental conditions make these species successful short-rotation woody crops (SRWCs). Camden white gum (Eucalyptus benthamii), a more cold tolerant species, has made management of eucalyptus plantations viable in southern portions of the United States such …

Development Of An Automated Detection System For Nitrite In Aquatic Environments, Tim Schierenbeck

Theses and Dissertations

The main objective of the project is to develop an automated nitrite sensor for use in aquatic environments, and more specifically for use in recirculating aquaculture systems (RAS), where monitoring can help sustain a controlled environment, protect against nitrite intoxication, and promote fish health. Detecting nitrite manually with semi-quantitative colorimetric test kits, although inexpensive and simple, is prone to inter-user variability and poor sensitivity. An automated nitrite sensor has potential to provide higher resolution measurements at both concentration and time scales and can serve as a research tool for the study of filtration systems essential in maintaining a healthy RAS …

Movement, Habitat Use, Reproduction, And Commercial Harvest Of Paddlefish In Lake Dardanelle, Arkansas, Adam Geik

Theses and Dissertations from 2016

Paddlefish Polyodon spathula are a valuable commercial species throughout much of their range including Lake Dardanelle, one of the most important commercial paddlefish fisheries in Arkansas. While fecundity, mortality, and age and growth of paddlefish stocks in Lake Dardanelle have been assessed previously, information on their movements, habitat utilization, and commercial harvest rates is lacking. To help fill this information gap, 39 paddlefish were tracked a minimum of once per month from October 2014 through September 2015. Habitat selection was determined for eight macrohabitat types and four bathymetric habitat types by comparing percent usage to percent availability. Four high-use (≥10%) …

Assessment Of Benthic Habitat Quality In Lower Green Bay, Lake Michigan With Special Regard To Potential Hexagenia Recolonization, Christopher Michael Groff

Theses and Dissertations

With environmental remediation in the Great Lakes, Hexagenia have recovered or are recovering in systems from which they were once extirpated. An active Hexagenia recovery does not appear to be taking place in lower Green Bay. This study first examines the highly fluidized nature of lower Green Bay sediment as a possible cause for their lack of recovery due to nymphs’ potential inability to construct and maintain burrows essential to the completion of their life cycles. Hexagenia bilineata nymphs collected from the Upper Mississippi River were distributed into oxygenated aquaria containing substrates from lower Green Bay or the Upper Mississippi …

Metabolomics Approach To Investigate Oxidation Stabilities In Different Bovine Muscles With Postmortem Aging, Danyi Ma

Open Access Theses

Postmortem aging has been extensively practiced in the meat industry for decades due to its beneficial impact on improving eating quality attributes. However, prolonged postmortem aging may adversely impact color and/or lipid oxidation stabilities of meat, leading to decreased display shelf-life and increased rancid off-flavor. As physical/biochemical changes occur during postmortem aging, metabolites that impart antioxidant or pro-oxidant activities are generated or consumed, which could be related to the oxidation stabilities of postmortem muscles with aging. However, the underlying mechanism of the aging-induced oxidation susceptibility has not been fully established. Therefore, the overall objective of this thesis was to understand …

Evaluating The Physical Welfare Of Dogs In Commercial Breeding Facilities In The United States, Moriah J. Hurt

Open Access Theses

Despite high levels of public concern, the state of commercial breeding (CB) dog welfare is largely unknown. Therefore, this study aimed to characterize the physical welfare of dogs in CB facilities and their environment in Indiana. This study specifically aimed 1) to characterize dog foot health in CB facilities as a function of the length of time dogs were housed on a given flooring substrate, 2) to characterize visual dog body cleanliness and visual kennel cleanliness as a function of the flooring substrate, 3) to determine the efficacy of kennel cleaning procedures and 4) to characterize the dog dental and …

Influence Of Dietary Component Manipulation And Feed Management Strategies On Growth And Rumen Development Of Weaned Dairy Heifers, Tana Shea Dennis

Open Access Dissertations

Well-developed replacement heifers provide a central foundation for the continued success of the dairy industry. Emphasis on improving pre-weaned calf nutrition has predominated in the industry, but opportunities exist to improve post-weaning heifer nutrition and management. We aimed to evaluate common feed management strategies seen in the industry and their effects on growth, feed efficiency (G:F), and rumen development of calves from birth to 8 mo of age using pen- and individually-fed animal trials. Little information exists regarding post-weaning performance and rumen development of calves fed conventional or high planes of nutrition pre-weaning; therefore, we evaluated two milk replacer feeding …

Comparisons Of Selected Household And Commercial Disinfectants Against Poultry Salmonella Isolates And A Survey Of Internal Parasites In Backyard Poultry In Arkansas, Kayleigh Moyle

Graduate Theses and Dissertations

Backyard and exhibition poultry have been gaining in popularity and as such there has been a large increase in the number of small flocks. As the interaction with poultry has increased, so has the opportunity for diseases and parasites, for both birds and people. One of the major zoonotic illnesses is caused by the bacteria Salmonella, which can be found in commercial and small flocks. Salmonella is the number 2 contributor of foodborne illnesses so its prevalence in commercial flocks is of high concern. Despite improved cleaning, disinfection, and biosecurity practices, there is still potential for disease outbreaks and infections …

Efficacy Of A Novel Intranasal Zinc Solution On The Microbiome, Health, And Growth Performance Of High-Risk, Newly Received Stocker Cattle, Makenzie Foster

Graduate Theses and Dissertations

The objective of this study was to determine if using an intranasal zinc (Zn) solution would impact health and growth performance of high-risk stocker cattle. Male beef calves (n = 239; 3 arrival dates [block]; initial BW = 276 ± 2.4 kg) were stratified by arrival gender and BW and assigned to 1 of 2 treatments: 1) treated with 3 ml of a Zn solution containing 36.24 mg of Zn administered intranasally, or 2) control, in which calves were not treated. Calves were observed daily and if exhibiting signs of morbidity and a rectal temperature ≥ 40° C they were …