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Full-Text Articles in Operations Research, Systems Engineering and Industrial Engineering

Discriminative Measures For Comparison Of Phylogenetic Trees, Omur Arslan, Dan P. Guralnik, Daniel E. Koditschek Jan 2017

Discriminative Measures For Comparison Of Phylogenetic Trees, Omur Arslan, Dan P. Guralnik, Daniel E. Koditschek

Departmental Papers (ESE)

In this paper we introduce and study three new measures for efficient discriminative comparison of phylogenetic trees. The NNI navigation dissimilarity $d_{nav}$ counts the steps along a “combing” of the Nearest Neighbor Interchange (NNI) graph of binary hierarchies, providing an efficient approximation to the (NP-hard) NNI distance in terms of “edit length”. At the same time, a closed form formula for $d_{nav}$ presents it as a weighted count of pairwise incompatibilities between clusters, lending it the character of an edge dissimilarity measure as well. A relaxation of this formula to a simple count yields another measure on all ...


Clustering-Based Robot Navigation And Control, Omur Arslan Aug 2016

Clustering-Based Robot Navigation And Control, Omur Arslan

Departmental Papers (ESE)

In robotics, it is essential to model and understand the topologies of configuration spaces in order to design provably correct motion planners. The common practice in motion planning for modelling configuration spaces requires either a global, explicit representation of a configuration space in terms of standard geometric and topological models, or an asymptotically dense collection of sample configurations connected by simple paths, capturing the connectivity of the underlying space. This dissertation introduces the use of clustering for closing the gap between these two complementary approaches. Traditionally an unsupervised learning method, clustering offers automated tools to discover hidden intrinsic structures in ...