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Full-Text Articles in Nanoscience and Nanotechnology

A Versatile Python Package For Simulating Dna Nanostructures With Oxdna, Kira Threlfall May 2022

A Versatile Python Package For Simulating Dna Nanostructures With Oxdna, Kira Threlfall

Computer Science and Computer Engineering Undergraduate Honors Theses

The ability to synthesize custom DNA molecules has led to the feasibility of DNA nanotechnology. Synthesis is time-consuming and expensive, so simulations of proposed DNA designs are necessary. Open-source simulators, such as oxDNA, are available but often difficult to configure and interface with. Packages such as oxdna-tile-binding pro- vide an interface for oxDNA which allows for the ability to create scripts that automate the configuration process. This project works to improve the scripts in oxdna-tile-binding to improve integration with job scheduling systems commonly used in high-performance computing environments, improve ease-of-use and consistency within the scripts compos- ing oxdna-tile-binding, and move …


An Annotated Corpus With Nanomedicine And Pharmacokinetic Parameters, Nastassja Lewinski, Ivan Jimenez, Bridget Mcinnes Jan 2017

An Annotated Corpus With Nanomedicine And Pharmacokinetic Parameters, Nastassja Lewinski, Ivan Jimenez, Bridget Mcinnes

Chemical and Life Science Engineering Publications

A vast amount of data on nanomedicines is being generated and published, and natural language processing (NLP) approaches can automate the extraction of unstructured text-based data. Annotated corpora are a key resource for NLP and information extraction methods which employ machine learning. Although corpora are available for pharmaceuticals, resources for nanomedicines and nanotechnology are still limited. To foster nanotechnology text mining (NanoNLP) efforts, we have constructed a corpus of annotated drug product inserts taken from the US Food and Drug Administration’s Drugs@FDA online database. In this work, we present the development of the Engineered Nanomedicine Database corpus to support the …


Granular Matter: Microstructural Evolution And Mechanical Response, Aashish Ghimire, Ishan Srivastava, Timothy S. Fisher Aug 2014

Granular Matter: Microstructural Evolution And Mechanical Response, Aashish Ghimire, Ishan Srivastava, Timothy S. Fisher

The Summer Undergraduate Research Fellowship (SURF) Symposium

Heterogeneous (nano) composites, manufactured by the densification of variously sized grains, represent an important and ubiquitous class of technologically relevant materials. Typical grain sizes in such materials range from macroscopic to a few nanometers. The morphology exhibited by such disordered materials is complex and intricately connected with its thermal and electrical transport properties. It is important to quantify the geometric features of these materials and simulate the fabrication process. Additionally, granular materials exhibit complex structural and mechanical properties that crucially govern their reliability during industrial use. In this work, we simulate the densification of soft deformable grains from a low-density …


Artificial Intelligence: Soon To Be The World’S Greatest Intelligence, Or Just A Wild Dream?, Edward R. Kollett Mar 2010

Artificial Intelligence: Soon To Be The World’S Greatest Intelligence, Or Just A Wild Dream?, Edward R. Kollett

Academic Symposium of Undergraduate Scholarship

The purpose of the paper was to examine the field of artificial intelligence. In particular, the paper focused on what has been accomplished towards the goal of making a machine that can think like a human, and the hardships that researchers in the field has faced. It also touched upon the potential outcomes of success. Why is this paper important? As computers become more powerful, the common conception is that they are becoming more intelligent. As computers become more integrated with society and more connected with each other, people again believe they are becoming smarter. Therefore, it is important that …