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Computer Engineering Commons

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Computer Science and Engineering: Theses, Dissertations, and Student Research

Domains

2013

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Clustering And Classification Of Multi-Domain Proteins, Neethu Shah Dec 2013

Clustering And Classification Of Multi-Domain Proteins, Neethu Shah

Computer Science and Engineering: Theses, Dissertations, and Student Research

Rapid development of next-generation sequencing technology has led to an unprecedented growth in protein sequence data repositories over the last decade. Majority of these proteins lack structural and functional characterization. This necessitates design and development of fast, efficient, and sensitive computational tools and algorithms that can classify these proteins into functionally coherent groups.

Domains are fundamental units of protein structure and function. Multi-domain proteins are extremely complex as opposed to proteins that have single or no domains. They exhibit network-like complex evolutionary events such as domain shuffling, domain loss, and domain gain. These events therefore, cannot be represented in the ...