Biomedical Engineering and Bioengineering Commons^™

A Depolymerization Based Model Of Neuron Growth Cone Shape And Motility, Neerajha Nagarajan

Master's Theses

Cell migration is a ubiquitous process underlying critical biological mechanisms like wound healing, cancer metastasis and even neuron growth cone motility. It is a critical process for the living organisms as it ensures proper functioning of the system, for example, crawling fibroblasts endure closure of wounds during wound healing. Here we focus our interest on neuron growth cones, a sensory and motile organelle present at the tip of extending neurites, like the axons, in neurons. These are responsible for neuron pathfinding onto specific targets and synapses, in responses to various guidance cues. Interestingly, the motility of the growth cones is …

Growth And Expression Of Halorhodopsin For Application In A Protein-Based Artificial Retina, Megan Ryan Gillespie

Honors Scholar Theses

Halorhodopsin (HR), a light-activated chloride ion pump, demonstrates potential for use as the scaffolding in an artificial retina. Retinal implants are needed to restore vision to people afflicted with ophthalmic diseases, such as age-related macular degeneration (AMD) and retinitis pigmentosa (RP). A protein-based chloride ion-patch would be utilized by the eye to create an influx of chloride ions, similar to ion concentrations in healthy retinas during the conversion of light stimuli to electrochemical signals. This protein-based retinal prosthesis will directly stimulate the bipolar cells of the retina, replacing the function of damaged photoreceptor cells. Other alternative treatments for AMD and …

Electronic Circuit To Mimic The Neural Network For The Saccade Controller, Justin D. Morse

Honors Scholar Theses

The proposed device is an electronic circuit that mimics the neural network controlling fast eye movements, or saccades. The device simulates the signals produced by each neuronal population during the control of a horizontal saccade and allows for observing and recording. It will serve as a valuable teaching tool in the field of neural control. Furthermore, the device will have applications in the realm of diagnosing and properly treating brain injury. Finally, this device could be incorporated into a system for controlling the eye movements of a realistic, artificially intelligent robot.

The FitzHugh-Nagumo model of the action potential is used …

Improved Tissue Caliper, Kenneth Ted-Luck Hung

Honors Scholar Theses

My honors thesis will be covering the work that I am doing for my senior design project. My senior design project involves building a tissue caliper for medical device company, Covidien. During medical research and development it is often necessary to measure and document the thickness of tissue samples and media (simulated tissue foam). A device known as a tissue caliper is currently used to perform such measurements. Our project requires us to design, build, calibrate, and validate an instrument, which will be capable of measuring sample thicknesses ranging from 0.10 to 1.00 inches with an accuracy of ± 0.005 …

A Stochastic Simulation Model Of Alarm Response Strategies On A Telemetry Floor, Tasneem M. Pishori

Master's Theses

The large quantity of alarms characteristic of clinical settings have resulted in nursing staff suffering from a phenomenon termed ‘alarm fatigue’. Alarm fatigue is desensitization via habituation – as these commonly heard noises cause caregivers to have delayed or no response to alarms. Alarm management was ranked number one on the annual top ten list of technology hazards afflicting healthcare institutions published by the ECRI Institute for 2012. Several patient safety organizations have established alarm fatigue as a priority concern, and are working to eradicate the issue from the healthcare environment by 2017. To better understand the problem, a simplified …

Development And Application Of A Portable System To Reliably Measure Grip Forces Using Thin-Film Force Sensors, Shane Vincent Tornifoglio

Master's Theses

Accurate tracking of hand grip force is an important consideration needed for a robust understanding in the study of human biomechanics. One aspect where it proves useful is in hand-arm vibration, such as from gripping a power tool. Depending on how firmly the user is gripping the tool, they may change their exposure levels to the tool vibration, which can lead to potential disorders such as Hand-Arm Vibration Syndrome (HAVS).

A small, battery powered portable force unit has been developed to supply power to, and condition, the signals from eight thin-film force sensors. This gives a better understanding of the …

A Comprehensive Methodology For Assessing Biomechanical Risks Associated With Hand Tool Use: Applied To Laparoscopic Surgical Instruments, Drew R. Seils

Master's Theses

Biomechanical risk factors are physical stressors that act on the neuromuscular structures of the human body and are present in all occupational settings. Repetition and intensity of tasks performed can magnify the effects of the biomechanical risks that a worker is exposed to.

After reviewing the current literature on ergonomics in laparoscopic surgery it was clear that a comprehensive approach to quantitatively reporting on the biomechanical risk factors associated with surgical hand tools had never been performed. Utilizing an opto-electronic motion capture system meant the exact surgeon posture was recorded during simulated surgical tasks. Electromyography was used to evaluate muscle …

Detection Of Sk2 Channels On Hippocampal Neurons, Jamie L. Maciaszek

Master's Theses

Calcium-activated small conductance potassium channels (SK) are crucial for synaptic plasticity, sleep, and learning and memory (Hammond, Bond et al. 2006; Cueni, Canepari et al. 2008; Lin, Lujan et al. 2008). Despite the recent progress on SK channel physiology, the precise spatial organization of SK channels in neurons has remained unknown. Such knowledge is critical as the subcellular distribution of SK channels is an important determinant of neuronal excitability. Currently, there are no techniques to image ion channel distribution quantitatively at the nanometer scale in living cells. Here, it is demonstrated that integration of natural toxins with single molecule atomic …

Second Generation Data-Logging System For Long-Duration Field Measurement Of Vibration Exposure And Grip Force, Robert H. Knapp Iii

Master's Theses

Millions of United States workers are exposed to vibration at their job, whether it is from a power tool that causes hand and arm vibration or from heavy machinery. These vibrations are known to result in physical disorders such as Hand-Arm Vibration Syndrome, which can be debilitating to the point where workers can no longer do their job effectively. Research groups have taken an interest in finding what vibration characteristics are most harmful and choose to record vibration information using data-logging devices. Often, many devices, whether they are commercial or custom-built devices, use frequency weightings and full day estimations to …

An Open-Source Sandbox For Increasing The Accessibility Of Functional Programming To The Bioinformatics And Scientific Communities, Matthew Fenwick, Colbert Sesanker, Jay Vyas, Michael R. Gryk

UCHC Articles - Research

Scientists are continually faced with the need to express complex mathematical notions in code. The renaissance of functional languages such as LISP and Haskell is often credited to their ability to implement complex data operations and mathematical constructs in an expressive and natural idiom. The slow adoption of functional computing in the scientific community does not, however, reflect the congeniality of these fields. Unfortunately, the learning curve for adoption of functional programming techniques is steeper than that for more traditional languages in the scientific community, such as Python and Java, and this is partially due to the relative sparseness of …