Biomedical Engineering and Bioengineering Commons^™

Development Of The Mask Scentometer, A Comparison Of Ambient Odor Assessment Methods, And Their Application In Ground Truthing Atmospheric Dispersion Models, Christopher G. Henry

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

This dissertation is organized as four stand-alone papers. Paper No. 1 describes the development of the Mask Scentometer and reports dilution ratios measured during use by twelve different people. Dilution ratios at the Mask Scentometer’s five dilution-to-threshold (D/T) settings were found to be 0.35, 1, 2, 4.5 and 18. In Paper No.’s 2 and 4, ambient odor assessment methods were compared in both controlled laboratory conditions and in the field. Laboratory analysis of ambient air samples using dynamic triangular forced-choice olfactometry (DTFCO) did not correlate well with any of the ambient odor assessment methods. Average intensity-predicted D/T was roughly five …

Responses To “Comment On ‘Response To Plevin: Implications For Life Cycle Emissions Regulations’” And “Assessing Corn Ethanol: Relevance And Responsibility”, Adam Liska, Kenneth Cassman

Adam Liska Papers

This letter responds to two issues concerning the greenhouse gas (GHG) emissions intensity of corn-ethanol that were raised in discussions of our response (Liska and Cassman 2009) to Plevin’s article (2009), which critiques our original research (Liska et al. 2009) published in the Journal of Industrial Ecology. ... The suggestion by Anex and Lifset (2009) that corn-ethanol does not reduce GHG emissions by 47% compared to gasoline, but instead by “somewhere between” 35 to 40%, is unsubstantiated.

Synchronization And Media Exchange In Large-Scale Caenorhabditis Elegans Cultures, Jason D. Brown

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The nematode Caenorhabditis elegans is a model organism for understanding sensory molecules of multicellular organisms. Ovulating hermaphrodites produce putative pheromone(s) that cause male attraction. Because pheromones are produced in such small quantities, adult conditioned-media from large-scale synchronous culture is necessary to analyze these pheromones. Current protocols for culture synchronization have volume constraints that limit large-scale synchronous cultures and current methodology for adult conditioned-media production is impractical.

Modification of Tangential Flow Filtration (TFF) systems was investigated for use as a method to increase the volume limits of bleach egg harvest for C. elegans culture synchronization. Also, an adult retention device built …

Extraction And Characterization Of Natural Cellulose Fibers From Common Milkweed Stems, Narendra Reddy, Yiqi Yang

Biological Systems Engineering: Papers and Publications

Natural cellulose fibers with cellulose content, strength, and elongation higher than that of milkweed floss and between that of cotton and linen have been obtained from the stems of common milkweed plants. Although milkweed floss is a unique natural cellulose fiber with low density, the short length and low elongation make milkweed floss unsuitable as a textile fiber. The possibility of using the stems of milkweed plant as a source for natural cellulose fibers was explored in this research. Natural cellulose fibers extracted from milkweed stems have been characterized for their composition, structure, and properties. Fibers obtained from milkweed stems …

Beyond Biobricks: Synthesizing Synergistic Biochemical Systems From The Bottom-Up, Mark A. Bedau

Systems Science Friday Noon Seminar Series

Engineers who attempt to discover and optimize the behavior of complex biochemical systems face a dauntingly difficult task. This is especially true if the systems are governed by multiple qualitative and quantitative variables that have non-linear response functions and that interact synergistically. The synthetic biology community has responded to this difficulty by promoting the use of "standard biological parts" called "BioBricks", which are supposed to make biology into traditional engineering and enable engineers to "program living organisms in the same way a computer scientists can program a computer". But the BioBricks research program faces daunting hurdles, because the nonlinearity and …

Nanoenabled Microelectromechanical Sensor For Volatile Organic Chemical Detection, Chiara Zuniga, Matteo Rinaldi, Samuel M. Khamis, A. T. Johnson, Gianluca Piazza

Matteo Rinaldi

A nanoenabled gravimetric chemical sensor prototype based on the large scale integration of single-stranded DNA (ss-DNA) decorated single-walled carbon nanotubes (SWNTs) as nanofunctionalization layer for aluminum nitride contour-mode resonant microelectromechanical (MEM) gravimetric sensors has been demonstrated. The capability of two distinct single strands of DNA bound to SWNTs to enhance differently the adsorption of volatile organic compounds such as dinitroluene (simulant for explosive vapor) and dymethyl-methylphosphonate (simulant for nerve agent sarin) has been verified experimentally. Different levels of sensitivity (17.3 and 28 KHz µm^2/fg) due to separate frequencies of operation (287 and 450 MHz) on the same die have also …

Actual And Reference Evaporative Losses And Surface Coefficients Of A Maize Field During Nongrowing (Dormant) Periods, Christopher H. Hay, Suat Irmak

Biological Systems Engineering: Papers and Publications

Effective water resources planning, allocation, management, and use in agroecosystems require accurate quantification of actual evapotranspiration (ET_c) during growing and nongrowing (dormant) periods. Prediction of ET_c for a variety of vegetation surfaces during the growing season has been researched extensively, but relatively little information exists on evaporative losses during nongrowing periods for different surfaces. The objectives of this research were to evaluate ET_c in relation to available energy, precipitation, and grass and alfalfa-reference ET (ET_o and ET_r) for a maize (Zea mays L.) field and to analyze the dynamics of surface coefficients …

Adhesion Of Jurkat Cells In Defined Media And Substrates, Sarah De Leo

Honors Theses

No abstract provided.

Site-Specific Deoxyribonucleic Acid Modifications For Use With Chemical Cages, John P. Casey Jr

Honors Theses

No abstract provided.

Impedance Spectroscopy Of Zebrafish Sperm, Robert Egnatchik

Honors Theses

No abstract provided.

The In Vitro Characterization Of Chitosan-Plga Nanoparticle/Plasmid Dna Complexes, Hali Bordelon

Honors Theses

No abstract provided.

Synthesis And Characterization Of Hazelnut Oil-Based Biodiesel, Yixiang Xu, Milford Hanna

Biological Systems Engineering: Papers and Publications

The demand for diesel fuel far exceeds the current and future biodiesel production capabilities of the vegetable oil and animal fat industries. New oilseed crops that do not compete with traditional food crop are needed to meet existing energy demands. Hybrid hazelnut oil is just such an attractive raw material for production of biodiesel. Hazelnut oil was extracted from hybrid hazelnuts and the crude oil was refined. Hazelnut oil-based biodiesel was prepared via the transesterification of the refined hazelnut oil with excess methanol using an alkaline catalyst. The effects of reaction temperature, time and catalyst concentration on the yield of …

Bess: BIofuel ENergy SYstems SImulator: Life Cycle Energy & Emissions Analysis Model For Corn-Ethanol Biofuel Production Systems -- User’S Guide For The Bess Model, Adam Liska, Haishun Yang, Daniel T. Walters, Kenneth Cassman, Terry Klopfenstein, Galen Erickson, Virgil R. Bremer, Richard K. Koelsch, Dan Kenney, Patrick Tracy

Adam Liska Papers

The BESS model is a software tool to calculate the energy efficiency, greenhouse gas (GHG) emissions, and natural resource requirements of corn–to-ethanol biofuel production systems. The model provides a “cradle-to-grave” analysis of the production life cycle of biofuels from the creation of material inputs to finished products, producing an inventory of distributed GHG emissions from fossil fuels and a few key indirect emissions in the production life cycle. The model parameters can be set by the user to achieve the highest accuracy in evaluating a single corn-ethanol biorefinery and its surrounding feedstock crop production zone. The model equations and summary …

Influence Of The Graphitisation Of Hollow Carbon Nanofibers On Their Functionalisation And Subsequent Filling With Metal Nanoparticles, Jean-Philippe Tessonnier, Dirk Rosenthal, Frank Girgsdies, Julien Amadou, Dominique Begin, Cuong Pham-Huu, Dang Sheng Su, Robert Schlogl

Jean-Philippe Tessonnier

The functionalisation of carbon nanomaterials with the standard nitric acid treatment is greatly influenced by their graphitic character. The structural order directs the density as well as the nature of the created functional groups and, as a consequence, influences the efficiency of their filling with metal nanoparticles.

Amino-Functionalized Carbon Nanotubes As Solid Basic Catalysts For The Transesterification Of Triglycerides, Alberto Villa, Jean-Philippe Tessonnier, Olivier Majoulet, Dang Shen Su, Robert Schlogl

Jean-Philippe Tessonnier

Multiwalled carbon nanotubes grafted with various amino groups show high activity and stability when used as basic catalysts for the transesterification of triglycerides.

Selective Deposition Of Metal Nanoparticles Inside Or Outside Multiwalled Carbon Nanotubes, Jean-Philippe Tessonnier, Ovidiu Ersen, Gisela Weinberg, Cuong Pham-Huu, Dang Sheng Su, Robert Schlogl

Jean-Philippe Tessonnier

A general method is described for the deposition of metal nanoparticles selectively either inside or outside of carbon nanotubes (CNTs). The method is based on the difference in the interface energies of organic and aqueous solutions with the CNT surface. Because of their lipophilic character, the organic solvent better wets the surface of the nanotubes compared to water and penetrates into the inner volume. The precise control of the volume of each phase allows filling the CNT with the organic phase and covering its outer surface with the aqueous one. Hence, metal nanoparticles can be put with high selectivity either …

Dna Assembler, An In Vivo Genetic Method For Rapid Construction Of Biochemical Pathways, Zengyi Shao, Hua Zhao, Huimin Zhao

Zengyi Shao

The assembly of large recombinant DNA encoding a whole biochemical pathway or genome represents a significant challenge. Here, we report a new method, DNA assembler, which allows the assembly of an entire biochemical pathway in a single step via in vivo homologous recombination in Saccharomyces cerevisiae. We show that DNA assembler can rapidly assemble a functional d-xylose utilization pathway (∼9 kb DNA consisting of three genes), a functional zeaxanthin biosynthesis pathway (∼11 kb DNA consisting of five genes) and a functional combined d-xylose utilization and zeaxanthin biosynthesis pathway (∼19 kb consisting of eight genes) with high efficiencies (70 - 100%) …

Magnitude And Variability In Emissions Savings In The Corn-Ethanol Life Cycle From Feeding Co-Products To Livestock, Virgil R. Bremer, Adam Liska, Terry J. Klopfenstein, Galen E. Erickson, Haishun Yang, Daniel T. Walters, Kenneth G. Cassman

Adam Liska Papers

Conclusions

• Co-product GHG emissions credit varied by >2-fold, from 11.5 to 28.3 gCO₂e per MJ of ethanol produced

• Co-product GHG emissions credit depend on
-types of co-products produced
-proportion fed to beef cattle vs. diary or swine
-location of corn production; the CP credit is highest in regions where GHG kg^-1grain are highest

• Depending on CP production types and feeding livestock classes, corn-ethanol net life cycle GHG intensity is 44-56 gCO₂e per MJ

• Midwest corn-ethanol reduces GHG emissions compared to gasoline by 47% on average, with co-products offsetting 23% of …

Farm Tractor Rollover Protection: Why Simply Getting Rollover Protective Structures Installed On All Tractors Is Not Sufficient, Roger M. Hoy

Biological Systems Engineering: Papers and Publications

In North America, agricultural is one of the most hazardous occupations, trailing only mining and construction in likelihood of experiencing a serious injury or fatality. Without quoting specific statistics, roughly one-half of the serious injuries experienced each year involve an agricultural tractor, and roughly one-half of the serious injuries involving tractors are rollovers. It is well established that when a tractor is equipped with a rollover protective structure (ROPS) and seatbelt, and both are utilized, serious injuries rarely, if ever occur, in the event of an overturn. In fact, tractor overturns are the leading cause of agricultural fatalities in the …

Thermal Degradation Kinetics Of Distillers Grains And Solubles In Nitrogen And Air, Lijun Wang, Ajay Kumar, Milford Hanna, Curtis L. Weller, D. D. Jones

Biological Systems Engineering: Papers and Publications

The pyrolysis and oxidation kinetics of distillers grains and solubles were determined using thermogravimetric analysis. The starting temperature of pyrolysis and oxidation of distillers grains and solubles increased with the increase of heating rate and initial moisture content. The pyrolysis and oxidation of distillers grains and solubles were completed at 650°C and 850°C, respectively, which were independent of the heating rate and the initial moisture content. The residual weights of distillers grains and solubles after pyrolysis and oxidation were 27.15% and 5.49% of the original dry mass of distillers grains and solubles. Thermogravimetrical analysis data was used to determine kinetic …

Process Simulation Of Dilute Acid Pretreatment Of Coastal Bermudagrass For Bioethanol Production, Arthur Redding, Deepak R. Keshwani, Jay J. Cheng

Department of Biological Systems Engineering: Conference Presentations and White Papers

Coastal bermudagrass is a promising lignocellulosic feedstock for bioethanol production. It is well suited for the Southeastern United States where it is currently grown for hay production and nutrient management in animal farming operations. Prior experiments have generated sugar and sugar degradation data from the dilute acid pretreatment and enzymatic hydrolysis of bermudagrass over a range of pretreatment conditions. Experimentally, the yield of total glucose and xylose was maximized at 93 % of the theoretical value for the pretreatment conditions 140 °C and 1.2 % sulfuric acid (w/w) for a residence time of 30 minutes. To explore further potential optimum …

Development Of Novel Microwave Cooking Model For Not-Ready-To Eat Foods, Sohan Birla, Krishnamoorthy Pitchai, Jeyamkondan Subbiah, David D. Jones

Department of Biological Systems Engineering: Conference Presentations and White Papers

Recently safety of microwave cooked food has come under scrutiny because of recent outbreak and recalls associated with some of these not-ready-to-eat (NRTE) frozen foods. Heating uniformity of these foods is paramount in rendering the foods safe for consumption. Degree of uneven microwave heating is influenced by both microwave oven and characteristics of food load which decides the electric field distribution within the food load. Given the complexity of parameters, a computer model is always desirable to optimize heating uniformity by proper selection of food shape, proportions, plating, packaging selection and more. Earlier many researchers have made one or more …

Antiproliferation Properties Of Grain Sorghum Dry Distiller’S Grain Lipids In Caco-2 Cells, Richard Zbasnik, Timothy P. Carr, Curtis L. Weller, Keum Taek Hwang, Lijun Wang, Susan L. Cuppett, Vicki Schlegel

Biological Systems Engineering: Papers and Publications

Antiproliferative properties of lipids extracted from grain sorghum (GS) dry distiller’s grain (DDG) were analyzed to determine the feasibility of developing GS coproducts as a source for human health dietary ingredients. The lipid extract of GSDDG was delivered to human colon carcinoma (Caco-2) cells by solubilizing 0−1000 μg/mL of GS-DDG lipids in 100 μg/mL increments with micelles. A significant reduction in cell viability (25−50%) resulted at treatment levels of 400−1000 μg/mL GS-DDG lipids (p < 0.05). Alternatively, total protein levels of cells treated with 400, 500, and 600 μg/mL of GS-DDG lipid were not significantly different from the control, indicating cell growth during the treatment period. Total cell counts for the control were not significantly different from the GS-DDG lipid treated cells, but dead cell counts increased by 10% for the latter sample with a concomitant increase of the intercellular protein lactate dehydrogenase leakage (30−40%) in the medium. Preliminary analysis by the fluorescence-activated cell method (FACs) demonstrated that nonviable cells were in either the early apoptotic, late apoptotic, or necrotic stage post-treatment with 400, 500, and 600 μg/mL GS-DDG lipids. Physiochemical characterization of the GS-DDG lipids used for the antiproliferation study showed the presence of vitamin E (predominantly γ-tocopherol), triacylglycerides (predominantly linoleic acid), policosanols, aldehydes, and sterols (predominantly campesterol and stigmasterol), each of which or as synergistic/additive group of constituents may be responsible for the antiproliferative effect.

Mathematical Modeling Of Growth Of Salmonella In Raw Ground Beef Under Isothermal Conditions From 10 To 45° C, Vijay K. Juneja, Martin Valenzuela Melendres, Lihan Huang, Jeyamkondan Subbiah, Harshavardhan Thippareddi

Biological Systems Engineering: Papers and Publications

The objective of this study was to develop primary and secondary models to describe the growth of Salmonella in raw ground beef. Primary and secondary models can be integrated into a dynamic model that can predict the microbial growth under varying environmental conditions. Growth data of Salmonella at nine different isothermal conditions — 10,15, 20, 25, 28, 32, 35, 42, and 45 °C were first fitted into primary models, namely the logistic, modified Gompertz, Baranyi, and Huang models. Performances of these models were evaluated by using various statistical criteria, namely mean square error (MSE), pseudo-R², −2 log likelihood, …

Plant Sterol And Policosanol Characterization Of Hexane Extracts From Grain Sorghum, Corn, And Their Ddgs, Caolina Leguizamón, Curtis L. Weller, Vicki L. Schlegel, Timothy P. Carr

Biological Systems Engineering: Papers and Publications

Plant sterols (PS) and policosanols (PC) have been attributed with plasma cholesterol-lowering properties in humans. Hexane extracts from grain sorghum, corn and their distillers dried grain with solubles (DDGS), an important co-product of ethanol production, contain these health promoting compounds, which could be used to develop health promoting dietary products. However, limited information is currently available regarding optimal methods of extraction and their influence on plant sterol or PC levels and compositions. Therefore, the objective of this study was to quantify lipids, particularly PS and PC extracted from grain sorghum and its DDGS using reflux and Soxtec methods. Corn and …

Indirect Land Use Emissions In The Life Cycle Of Biofuels: Regulations Vs. Science, Adam J. Liska, Richard K. Perrin

Biological Systems Engineering: Papers and Publications

Recent legislative mandates have been enacted at state and federal levels with the purpose of reducing life cycle greenhouse gas (GHG) emissions from transportation fuels. This legislation encourages the substitution of fossil fuels with “low-carbon” fuels. The burden is put on regulatory agencies to determine the GHG-intensity of various fuels, and those agencies naturally look to science for guidance. Even though much progress has been made in determining the direct life cycle emissions from the production of biofuels, the science underpinning the estimation of potentially significant emissions from indirect land use change (ILUC) is in its infancy. As legislation requires …

Sorghum Distillers Dried Grain Lipid Extract Increases Cholesterol Excretion And Decreases Plasma And Liver Cholesterol Concentration In Hamsters, Jia Tse Hoi, Curtis L. Weller, Vicki Schlegel, Susan L. Cuppett, Ji-Young Lee, Timothy P. Carr

Biological Systems Engineering: Papers and Publications

Grain sorghum is a rich source of phytochemicals. In this study, male hamsters were fed AIN-93M diets supplemented with a hexane-extractable lipid fraction from sorghum distillers dried grains with solubles (DDGS). Diets contained 0.0%, 0.5%, 1.0%, and 5.0% (w/w) DDGS lipid extract. After 4 wk, the 5.0% DDGS lipids group had significantly lower plasma non-HDL cholesterol and liver esterified cholesterol concentration. Fecal neutral sterol (i.e., cholesterol) excretion was significantly higher in the 5.0% DDGS lipids group compared to the other treatments (66% higher compared to controls). Bile acid excretion was not affected by DDGS lipid intake. Fecal cholesterol excretion was …

Switchgrass For Bioethanol And Other Value-Added Applications: A Review, Deepak R. Keshwani, Jay J. Cheng

Biological Systems Engineering: Papers and Publications

Switchgrass is a promising feedstock for value-added applications due to its high productivity, potentially low requirements for agricultural inputs and positive environmental impacts. The objective of this paper is to review published research on the conversion of switchgrass into bioethanol and other value-added products. Environmental benefits associated with switchgrass include the potential for carbon sequestration, nutrient recovery from runoff, soil remediation and provision of habitats for grassland birds. Pretreatment of switchgrass is required to improve the yields of fermentable sugars. Based on the type of pretreatment, glucose yields range from 70% to 90%, and xylose yields range from 70% to …

Effect Of Timing Of A Deficit-Irrigation Allocation On Corn Evapotranspiration, Yield, Water Use Efficiency And Dry Mass, J. O. Payero, David D. Tarkalson, Suat Irmak, Don Davison, James L. Petersen

Biological Systems Engineering: Papers and Publications

Water regulations have decreased irrigation water supplies in Nebraska and some other areas of the USA Great Plains. When available water is not enough to meet crop water requirements during the entire growing cycle, it becomes critical to know the proper irrigation timing that would maximize yields and profits. This study evaluated the effect of timing of a deficit-irrigation allocation (150 mm) on crop evapotranspiration (ETc), yield, water use efficiency (WUE = yield/ETc), irrigation water use efficiency (IWUE = yield/irrigation), and dry mass (DM) of corn (Zea mays L.) irrigated with subsurface drip irrigation in the semiarid climate of …