Biomedical Engineering and Bioengineering Commons^™

Application Of Advanced Computational Modelling In The Numerical Prediction Of The Haemodynamic Impact Of Coronary Stent Implantation, Jonathan Murphy, Fergal Boyle

Conference Papers

Coronary stent implantation can improve blood flow in an artery narrowed by the build up of arterial plaque. However, the haemodynamic effect of stent placement is unclear and may influence arterial restenosis (re-blockage). In this investigation the stent induced, non-Newtonian blood flow disturbances have been captured in a three dimensional computational domain. The results clearly show areas of low wall shear stress proximal and distal to the stent wires, a characteristic which is known to encourage restenosis. Furthermore, this computational method of observing the complex haemodynamics of the stent environment can be used in conjunction with medical trial data to …

Distensibility Differs Between Sall Arteries And Veins In The Newborn Piglet Lung, John B. Gordon, Steven Thomas Haworth, Robert C. Molthen, Gary S. Krenz, Anne V. Clough

Biomedical Engineering Faculty Research and Publications

BACKGROUND: We previously used micro-CT techniques to measure pulmonary artery distensibility in 3 week old piglets. Pressure/diameter relationships were measured for each artery and the slope (a) was then plotted against its diameter intercept at 0 pressure (Do). The resultant diameter independent distensibility parameter, a, was estimated by linear regression to be 1.6% per mmHg for arteries between 0.2 and 3.0 mm Do.

OBJECTIVE: This study sought to determine whether; 1) distensibility of smaller arteries was similar to that of arteries with Do> 0.2 mm; and 2) whether small vein and artery distensibility was similar.

DESIGN/METHODS: Lower lobes were isolated …

Two In Vivo Surgical Approaches For Lumbar Corpectomy Using Allograft And A Metallic Implant: A Controlled Clinical And Biomechanical Study, Philbert Huang, Munish C. Gupta, Nesrin Sarigul-Klijn, Scott Hazelwood

Biomedical Engineering

Background context: Both bone graft and metallic implants have been used in combination with the necessary anterior rod or plate instrumentation to fill the voids left by vertebral body removal, with the ultimate goal of restoring stability. One type of device that has recently been introduced is an expandable titanium telescoping cage that is designed to be used as a strut implant to fill corpectomy defects. The use of these devices has met varying success. Acceptance by surgeons and spine biomechanicians has been limited by clinical failure with subsequent loss of reduction and increase in kyphosis. In order to further …

Department Of Biological Systems Engineering Newsletter, Issue 2, November 2006

BSE Department Magazine

Contents:
Visiting Scholar
Big changes in the BSE Computer Lab
From the Department Head
National Science Foundation Initiative Moving to Transform Water and Environment Research ByWayneWoldt
ASABE Awards
Nebraska Tractor Test Lab Welcomes New Director
Alumni News
August Graduation
College of Agricultural Sciences and Natural Resources Alumni Association (CASNRAA)
Hydrologic Studies in Prairie and Agricultural Watersheds Gleanings from a Faculty Development Leave by Dean E. Eisenhauer
Irrigation and Energy Conservation Field Day By Suat Irmak
P3–Ten Years
Hall of Fame
Vegetative Treatment Systems Help Small Livestock Producers Control Animal Waste by Kalee Olson
Ice Cream Social & Scholarship Recognition
Student …

Concept Frequency Distribution In Biomedical Text Summarization, Lawrence H. Reeve, Hyoil Han, Saya V. Nagori, Jonathan C. Yang, Tamara A. Schwimmer, Ari D. Brooks

Computer Sciences and Electrical Engineering Faculty Research

Text summarization is a data reduction process. The use of text summarization enables users to reduce the amount of text that must be read while still assimilating the core information. The data reduction offered by text summarization is particularly useful in the biomedical domain, where physicians must continuously find clinical trial study information to incorporate into their patient treatment efforts. Such efforts are often hampered by the high-volume of publications. Our contribution is two-fold: 1) to propose the frequency of domain concepts as a method to identify important sentences within a full-text; and 2) propose a novel frequency distribution model …

Oxidized Derivatives Of Ω-3 Fatty Acids: Identification Of Ipf 3Α-Vi In Human Urine, John A. Lawson, Seongjin Kim, William S. Powell, Garret Gerald A. Fitzgerald, Joshua Rokach

Chemistry and Chemical Engineering Faculty Publications

Isoprostanes (iPs) are prostaglandin-like molecules derived from autoxidation of polyunsaturated fatty acids (PUFAs). Urinary iP levels have been used as indices of in vivo lipid peroxidation. Thus far, it has only been possible to measure iPs derived from arachidonic acid in urine, because levels of iPs/neuroprostanes (nPs) derived from ω3-PUFAs have been found to be below detection limits of available assays. Because of the interest in ω3-PUFA dietary supplementation, we developed specific methods to measure nPF4α-VI and iPF3α-VI [derived from 4,7,10,13,16,19-docosahexaenoic acid (DHA) and 5,8,11,14,17-eicosapentaenoic acid (EPA)] using a combination of chemical synthesis, gas chromatography/mass spectrometry (GC/MS), andliquid chromatography tandem …

Procedure To Quantify Biofilm Activity In Carriers Used In Wastewater Treatment Systems, James Bolton, Archana Tummala, Chirag Kapadia, Manoj Dandamudi, Joanne M. Belovich

Chemical & Biomedical Engineering Faculty Publications

A procedure is presented for evaluating and comparing the biological activity of biofilms attached to various biofilm carriers by measurement of the glucose consumption rate. This technique allows for the economical design and selection of small particulate biofilm carriers that will maximize substrate removal when used in industrial-scale fluidized bioreactors. Methods for ensuring reproducible results are described. To support the glucose consumption rate findings, biofilm dry weights were obtained at the conclusion of activity rate experiments, and scanning electron micrographs were taken to evaluate the presence of biofilm and to view surface characteristics. Fourteen different biofilm carriers were evaluated ranging …

Incorporation Of Polyethylene Glycol Into Self-Assembled Monolayers Enhances Substrate-Mediated Gene Delivery By Nonspecifically- Bound Complexes, Angela K. Pannier, Lonnie D Shea

Department of Biological Systems Engineering: Conference Presentations and White Papers

Developing systems capable of controlled and efficient gene transfer is a fundamental goal of biotechnology, with applications including functional genomics, gene therapy, and tissue engineering. Substrate-mediated delivery, also termed solid phase delivery, describes the immobilization of DNA, complexed with nonviral vectors, to a biomaterial or substrate through specific or nonspecific interactions. Cells cultured on the substrate are exposed to elevated DNA concentrations within the local microenvironment, which enhances transfection. We investigated transfection resulting from DNA complexes immobilized to a substrate through specific interactions introduced through complementary functional groups on the vector and surface or through nonspecific interactions. Self-assembled monolayers (SAMs) …

A Novel Open Field Activity Detector To Determine Spatial And Temporal Movement Of Laboratory Animals After Injury And Disease, Andrew O. Koob, John Cirillo, Charles F. Babbs

Weldon School of Biomedical Engineering Faculty Publications

Among the wide range of tests for laboratory animal behavior after neurological injury or disease, each has its benefits and drawbacks. The varied behavior that an animal exhibits makes it difficult to decide which test to use. However, a fundamental instinct for the laboratory animal is to explore when placed in a new environment. A way to test exploratory behavior is in the open field. Here, we introduce a simple activity box without the use of video equipment to determine the exploratory movement of a rat after traumatic brain injury. The activity box is an open field, and the rat …

The Effect Of Auditory And Visual Distracters On The Useful Field Of View: Implications For The Driving Task, Joanne Wood, Alex Chaparro, Louise Hickson, Nick Thyer, Philippa Carter, Julie Hancock, Adrene Hoe, Ivy Le, Louisa Sahetapy, Floravel Ybarzabal

Publications

PURPOSE. The driving environment is becoming increasingly complex, including both visual and auditory distractions within the in-vehicle and external driving environments. This study was designed to investigate the effect of visual and auditory distractions on a performance measure that has been shown to be related to driving safety, the useful field of view.

METHODS. A laboratory study recorded the useful field of view in 28 young visually normal adults (mean 22.6 +- 2.2 years). The useful field of view was measured in the presence and absence of visual distracters (of the same angular subtense as the target) and with three …

Analysis Of Gait Characteristics In Mentally Handicapped Individuals, Prakriti Parijat, Jian Liu, Thurmon E. Lockhart, Courtney Haynes

Computer Sciences and Electrical Engineering Faculty Research

Physical and motor dysfunctions in mentally handicapped individuals predispose them to a higher risk of slip and fall accidents. It is estimated that over 60 million people are currently suffering with some level of developmentally related cognitive impairment (American Disability Act ADA, 2000). Mental retardation occurs in 2.5-3% of the general population. About 6-7.5 million mentally retarded individuals live in the United States alone (ADA, 2000). Slip induced fall accidents are a primary source of injury in people with mental retardation (MR). Often, the incidence of falls among this population is compounded by other disabilities such as autism, seizure, and …

The Effect Of Plate Rotation On The Stiffness Of Femoral Liss: A Mechanical Study, Afshin Khalafi, Shane Curtiss, Scott Hazelwood, Philip Wolinsky

Biomedical Engineering

Objective: Malposition of the femoral Less Invasive Stabilization System (LISS) plate may alter its biomechanical behavior. This study compares the mechanical stability of ‘‘correctly’’ affixed LISS plates matching the slope of the lateral femoral condyle to ‘‘incorrectly’’ placed LISS plates fixed in external rotation relative to the distal femur.

Methods: A fracture gap model was created to simulate a comminuted supracondylar femur fracture (AO/OTA33-A3). Fixation was achieved using two different plate positions: the LISS plate was either placed ‘‘correctly’’ by internally rotating the plate to match the slope of the lateral femoral condyle, or ‘‘incorrectly’’ by externally rotating the plate …

The Influence Of Ultrasonic Setting On Fluoride Release From Glass Polyalkenoate Cements, N. Rushe, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

The effects of ultrasonic setting on fluoride release from glass polyalkenoate cements (GPC) were investigated. Cements based on two different aluminosilicate glasses that contained silica, alumina, phosphate, and strontia were used for the experiment. A series of GPCs were examined to show that increased release F^- ion occurs, regardless of GPC composition. The results show that there is a greater release of fluoride from the ultrasonically set samples than those set chemically, regardless of the chemical composition. The snap set caused by the ultrasound is likely to be due to a combination of cavitation, improved mixing of the constituents, …

Modulation Of Stretch Reflexes Of The Finger Flexors By Sensory Feedback From The Proximal Upper Limb Poststroke, Gilles Hoffmann, Derek G. Kamper, Jennifer H. Kahn, William Zev Rymer, Brian D. Schmit

Biomedical Engineering Faculty Research and Publications

Neural coupling of proximal and distal upper limb segments may have functional implications in the recovery of hemiparesis after stroke. The goal of the present study was to investigate whether the stretch reflex response magnitude of spastic finger flexor muscles poststroke is influenced by sensory input from the shoulder and the elbow and whether reflex coupling of muscles throughout the upper limb is altered in spastic stroke survivors. Through imposed extension of the metacarpophalangeal (MCP) joints, stretch of the relaxed finger flexors of the four fingers was imposed in 10 relaxed stroke subjects under different conditions of proximal sensory input, …

Influence Of Two Changes In The Composition Of An Acrylic Bone Cement On Some Of Its Properties: The Case Of Surgical Simplex® P, S. Madigan, Mark R. Towler, G. Lewis

Chemical and Biochemical Engineering Faculty Research & Creative Works

Influence of two changes in the composition of a self-curing acrylic bone cement on some of its properties are discussed. Acrylic bone cements are widely used in orthopedic surgery for the fixation of joint prosthesis and in vertebroplasty and kyphoplasty for the stabilization and augmentation of fractured vertebrae. The cement's curing process is the result of a free-radical polymerization of a mixture of poly (methyl 1 methacrylate) [PMMA] containing powder and a liquid monomer that has methyl methacrylate (MMA) in it. It is initiated by the decomposition of benzoyl peroxide (BPO) in the powder, activated by a tertiary amine in …

Calcium And Zinc Ion Release From Polyalkenoate Cements Formed From Zinc Oxide/Apatite Mixtures, Mark R. Towler, S. Kenny, D. Boyd, T. Pembroke, M. Buggy, A. Guida, R. G. Hill

Chemical and Biochemical Engineering Faculty Research & Creative Works

Calcium and zinc ion release from hydroxyapatite-zinc oxide-poly (acrylic acid) (HAZnO-PAA) composite cements into deionised water was investigated as a function of HA content, PAA concentration, PAA molecular weight and maturation time. At any given maturation time, zinc ion release was constant until the HA content was at the maximum loading (60 wt%) resulting in the cement matrix breaking up, allowing exacerbated ion release. The calcium ion release increased with increased HA content in the composite until the maximum loading where the release drops off. Up to this point, the release of both ionic species was proportional to square root …

Closure Of Earthern Manure Structures (Including Basins, Holding Ponds And Lagoons), Don D. Jones, Richard K. Koelsch, Saqib Mukhtar, Ronald Sheffield, John W. Worley

Department of Biological Systems Engineering: Conference Presentations and White Papers

This paper is a summary of what is known scientifically about the closure of earthen manure structures without artificial liners, including lagoons, storage basins, and runoff holding ponds, and what needs to be examined further to increase our understanding of the dynamics of closing them in an environmentally safe manner. This information should be useful as a guide for state regulatory agencies considering rules for closure and for academicians and consultants who work with livestock production facilities.

Detection And Neutralization Of Bacterial Biohazards Via Nanoencapsulation, Rosaura De Zayas

FIU Electronic Theses and Dissertations

Bacteria biohazards, such as Anthrax, are responsible for causing mild to serious illnesses in humans and animals. The primary aim of this research study was to develop a rapid one step assay to detect and neutralize bacteria-based biohazards, using an Immunoliposome-nanoparticle complex. An Anthrax model, Bacillus cereus, was grown for 3 hours and diluted 1:25 in media (2.0 x 107 cfu/ml). The Bacillus cereus was interacted with an Immunoliposome-nanoparticle complex containing an MgO-C 2 neutralization agent. The samples were analyzed via flow cytometry with a 1:8:1 ratio Bacillus cereus, Immunoliposome-nanoparticle complex, and Ethidium homodimer-1 for two hours. The results obtained …

Pre- And Post-Alpha Motoneuronal Control Of The Soleus H-Reflex During Sinusoidal Hip Movements In Human Spinal Cord Injury, Maria Knikou, Debjani Chaudhuri, Elizabeth Kay, Brian D. Schmit

Biomedical Engineering Faculty Research and Publications

The aim of this study was to establish the contribution of hip-mediated sensory feedback to spinal interneuronal circuits during dynamic conditions in people with incomplete spinal cord injury (SCI). Specifically, we investigated the effects of synergistic and antagonistic group I afferents on the soleus H-reflex during imposed sinusoidal hip movements. The soleus H-reflex was conditioned by stimulating the common peroneal nerve (CPN) at short (2, 3, and 4 ms) and long (80, 100, and 120 ms) conditioning test (C-T) intervals to assess the reciprocal and pre-synaptic inhibition of the soleus H-reflex, respectively. The soleus H-reflex was also conditioned by medial …

Department Of Biological Systems Engineering Newsletter, Issue 1, August 2006

BSE Department Magazine

Contents:
Welcome Comments from Department Head
Student Poster Exhibition
Quarter-scale Tractor Team
Distinguished Fellowship Awards
Scoops and Scholars
Educational Objectives
ASABE Honors Department Faculty and Staff Members
Computer Tool Helps Crop Production under Limited Irrigation
Comings and Goings
Milestones
Faculty and Staff News
Alumni Update
Alumni Profile
Graduation
UCare Spring 2006 Undergraduate Research
MSYM Student on Winning Team
A Nebraskan Goes Way South
Visitors to BSE

99mTc-Labeled C2a Domain Of Synaptotagmin I As A Target-Specific Molecular Probe For Noninvasive Imaging Of Acute Myocardial Infarction, Ming Zhao, Xiaoguang Zhu, Shundong Ji, Jundong Zhou, Kutlan S. Ozker, Wei Fang, Robert C. Molthen, Robert S. Hellman

Biomedical Engineering Faculty Research and Publications

Abstract: The exposure of phosphatidylserine (PtdS) is a common molecular marker for both apoptosis and necrosis and enables the simultaneous detection of these distinct modes of cell death. Our aim was to develop a radiotracer based on the PtdS-binding activity of the C2A domain of synaptotagmin I and assess ^99mTc-C2A-GST (GST is glutathione S-transferase) using a reperfused acute myocardial infarction (AMI) rat model. Methods: The binding of C2A-GST toward apoptosis and necrosis was validated in vitro. After labeling with ^99mTc via 2-iminothiolane thiolation, radiochemical purity and radiostability were tested. Pharmacokinetics and biodistribution were studied in healthy rats. …

Vegetative Treatment Systems For Open Lot Runoff: Review Of Literature, Richard K. Koelsch, Jeffrey Lorimer, Kyle Mankin

Department of Biological Systems Engineering: Conference Presentations and White Papers

Runoff from open lot livestock systems (beef and dairy) defined as Concentrated Animal Feeding Operations (CAFO) must be controlled by systems designed and managed to prevent the release of manure-contaminated runoff for storms equal to or less than a 25-year, 24-hour design storm. This performance standard has been attained for open lot systems with some combination of clean water diversion, settling basins, runoff collection ponds and irrigation systems (baseline system).

An alternative approach is to rely on overland flow and infiltration into cropland with perennial forage or grasses for treatment of open lot runoff. Such vegetative systems have been researched …

Vascular Reactivity Of Isolated Rat Mesenteric Arterioles In The Presence And Absence Of Ouabain, Rohit Chawla

FIU Electronic Theses and Dissertations

The microvasculature plays a significant role in the regulation of blood pressure and regional blood supply. Cardiotonic steroids like the adrenal cortical hormone (ouabain) have been proposed to play a role in some forms of hypertension. The purpose of this study was to determine the effect of different agonists on arteriolar diameter in the presence and absence of ouabain.

In Vitro studies on isolated intact rat mesenteric arterioles were performed by administering different concentrations of the vasoconstrictor norepinephrine (NE) and the vasorelaxant acetylcholine (Ach) in the presence and absence of ouabain. NE induced constriction was not significantly enhanced in the …

Yield Response Of Corn To Deficit Irrigation In A Semiarid Climate, José O. Payero, Steven R. Melvin, Suat Irmak, David D. Tarkalson

Biological Systems Engineering: Papers and Publications

Irrigation water supplies are decreasing in many areas of the U.S. Great Plains, which is requiring many farmers to con¬sider deficit-irrigating corn (Zea mays L.) or growing crops like winter wheat (Triticum aestivum L.) that require less water, but that are less profitable. The objectives of this study were to: (1) quantify the yield response of corn to deficit irrigation, and (2) determine which of several seasonal water variables correlated best to corn yield in a semiarid climate. Eight (T1–T8) and nine (T1–T9) deficit-irrigated treatments (including dryland), were compared in 2003 and 2004 in North Platte, Nebraska. The …

Economics Of Manure Phosphorus Distribution From Beef Feeding Operations, William F. Kissinger, Raymond E. Massey, Richard K. Koelsch, Galen E. Erickson

Department of Biological Systems Engineering: Conference Presentations and White Papers

An economic model was developed to evaluate cost and value of manure distribution. Feedlots ranging in size from 2,500 head to 25,000 head one-time capacities were used as case studies to calculate excretion amounts from cattle fed diets with a range of phosphorus. Diet P and subsequent costs of distributing the manure were used to analyze the corresponding costs of manure distribution, in addition to determining the required available land needed to be in compliance with a nutrient management plan based on utilization of manure P by the crops grown.

The model illustrated when animals are fed diets of increasing …

National Livestock And Poultry Environmental Learning Center, Richard K. Koelsch, Mark Risse, Joe Harrison, Jill Heemstra, Frank Humenik

Department of Biological Systems Engineering: Conference Presentations and White Papers

This paper describes a new national initiative to improve the delivery of science-based information to non-research customers. The vision of the Livestock and Poultry Environmental Learning Center is to provide individuals involved in public policy issues, animal production, and delivery of technical services for confined animal systems with on-demand access to the nation’s best science-based resources that is responsive to priority and emerging environmental issues associated with animal agriculture. This paper describes the implementation plans for this project.

Bme Annual Report 2005-2006, Department Of Biomedical Engineering, Florida International University

Biomedical Engineering Department Annual Reports

No abstract provided.

Critical Computational Aspects Of Near Infrared Circular Tomographic Imaging: Analysis Of Measurement Number, Mesh Resolution And Reconstruction Basis, Phaneendra K. Yalavarthy, Hamid Dehghani, Brian W. Pogue, Keit D. Paulsen

Dartmouth Scholarship

The image resolution and contrast in Near-Infrared (NIR) tomographic image reconstruction are affected by parameters such as the number of boundary measurements, the mesh resolution in the forward calculation and the reconstruction basis. Increasing the number of measurements tends to make the sensitivity of the domain more uniform reducing the hypersensitivity at the boundary. Using singular-value decomposition (SVD) and reconstructed images, it is shown that the numbers of 16 or 24 fibers are sufficient for imaging the 2D circular domain for the case of 1% noise in the data. The number of useful singular values increases as the logarithm of …

Cosmm: An Undergraduate Laboratory For Engineering And Manufacturing Complex, Organic Shapes Using Nature As A Template, Daniel Walsh, Lanny Griffin, Robert Crockett

Biomedical Engineering

No abstract provided.

Alterations In Regional Vascular Geometry Produced By Theoretical Stent Implantation Influence Distributions Of Wall Shear Stress: Analysis Of A Curved Coronary Artery Using 3d Computational Fluid Dynamics Modeling, John F. Ladisa, Lars E. Olson, Douglas Anthony Hettrick, David C. Warltier, Judy R. Kersten, Paul S. Pagel

Biomedical Engineering Faculty Research and Publications

Background

The success of stent implantation in the restoration of blood flow through areas of vascular narrowing is limited by restenosis. Several recent studies have suggested that the local geometric environment created by a deployed stent may influence regional blood flow characteristics and alter distributions of wall shear stress (WSS) after implantation, thereby rendering specific areas of the vessel wall more susceptible to neointimal hyperplasia and restenosis. Stents are most frequently implanted in curved vessels such as the coronary arteries, but most computational studies examining blood flow patterns through stented vessels conducted to date use linear, cylindrical geometric models. It …