Biomedical Engineering and Bioengineering Commons^™

Effect Of Amputation On Muscle Structure Properties In A Rabbit Model, Roy Caleb Stubbs

Masters Theses

After amputation, muscles in the residual limb are detached from their insertion points and no longer span the missing joints. Our objective was to quantify the effect of amputation-induced disuse on residual muscle structure, an indirect indicator of muscle force-generating capacity. One hind paw was surgically removed at the ankle joint of ten rabbits. At two weeks (n=5) and 4 weeks (n=5) post-amputation and for select muscles (gastrocnemius, soleus, tibialis cranialis, extensor digitorum, and flexor digitorum superficialis), we measured and computed several muscle structure properties. Additionally, we qualitatively assessed the muscle fiber appearance of histological samples at each timepoint. At …

Encapsulation Of Antimicrobial Peptides In Bicontinuous Microemulsions For Topical Delivery To Surgical Site Infections And Chronic Wounds, Madison A. Oehler

Masters Theses

Surgical site infections and chronic wounds, especially those caused by antibiotic-resistant microorganisms, result in hospitalization and fatalities each year. Methods to prevent these infections, such as cleaning and preparing medical tools, have had minimal success in preventing infections. Further, antibiotic treatments have become less successful in treating infections and wounds because of antibiotic-resistant bacteria. Antimicrobial peptides (AMP) are a possible treatment solution for wound infections. AMPs are oligopeptides that occur in nature or can be synthesized in vitro which possess a broad spectrum of antimicrobial activity against bacteria and other harmful microorganisms. AMPs operate by disrupting the packing arrangements of …

Optimized 3d-Printing Of Carbon Fiber-Reinforced Polyether-Ether-Ketone (Cfr-Peek) For Use In Overmolded Lattice Composite, Ryan C. Ogle

Masters Theses

Current orthopedic implants are overwhelmingly composed from metallic materials. These implants show superior mechanical properties, but this can additionally result in stress shielding due to a modulus mismatch between the bone tissue and implanted device. Polymeric implants reduce this stress shielding effect but have much lower mechanical properties, limiting their use. Polylactic acid (PLA) is a widely used biodegradable thermoplastic polymer, however, its use has been limited by the polymer’s mechanical properties and rapid loss of strength during degradation in vivo. Polyether-ether-ketone (PEEK) is another common biocompatible polymer , with chemical and mechanical properties which make it a popular alternative …

Iron Nanoparticles For Magnetic Imaging Applications, Aleia Williams

Masters Theses

Extensive research on iron oxide nanoparticles for various applications including nanomedicine, energy applications, environmental remediation, and magnetic imaging have previously been performed. Many are currently FDA approved as magnetic resonance imaging contrast agents and tracers for magnetic particle imaging applications. Magnetic properties of such materials are crucial to obtain good contrast and resolution. However, studies have shown the magnetic properties of iron oxide nanoparticles are less in comparison to those found in pure iron nanoparticle.

This research involves the synthesis and characterization of iron nanoparticles for applications in magnetic resonance imaging contrast agents, magnetic particle imaging tracers, and therapeutic agents …

Increasing Hydrophilicity And Transparency Of Diamond-Like Carbon Thin Films With Dopants For An Anti-Fogging Laparoscope Coating, Anna Bull

Masters Theses

Laparoscopes are prone to fogging which can lead to a limited field of view during surgical procedures. Current methods of mitigating fogging issues are not efficient or can require costly modification to the laparoscope. Previous studies of diamond-like carbon (DLC) coatings found doping the films improved hydrophilic qualities, suggesting their possible use as antifogging coatings for laparoscopes. For this work, two series of DLC films, doped with either SiO and Al₂O₃ were investigated.

The biocompatibility, transparency, and stability of these films were assessed through cellular assays, spectrophotometry, and simulated body fluid soaking experiments. Contact angle and surface …

Rare Earth-Doped Glass-Ceramic Scintillators As X-Ray Flat Panel Detector Substrates, Austin M. Thomas

Masters Theses

Digital radiography (DR) is an important two-dimensional imaging technique in the field of medicine that utilizes x-rays to form a digital image. DR employs a flat panel detector that converts incident x-rays, that have passed through the subject, to an electrical signal, which is used to create a digital image. The conversion from x-rays to electrical signals can be done either directly or indirectly. The direct method involves the x-rays being converted to an electrical signal via an array of semiconductors. The indirect method utilizes scintillators to absorb the x-rays and produce light in the visible spectrum, which is then …

Assessment Of The Use Of Low Molecular Weight Diblock Copolymers For The Formation Of Stable, Tunable Droplet Interface Bilayers, Joseph Tawfik

Masters Theses

This thesis presents the use of diblock copolymers, poly(butadiene)-b-poly(ethylene oxide) (PB_m PEO_n) and poly(isoprene)-b-poly(ethylene oxide) (PI_mPEO_n), as amphiphilic molecular building blocks for the formation of synthetic polymer bilayer membranes using the droplet interface bilayer (DIB) technique. The DIB technique makes use of the self-assembly of amphiphilic macromolecules along oil-water droplet interfaces that can then be physically connected for the construction of liquid supported macromolecular bilayers at the droplet interface. These bilayer membranes are capable of hosting both naturally occurring and synthetic protein channels. This technique has been used to form synthetic bilayer membranes …

Camera-Based Remote Photoplethysmography For Estimation Of Heart Rate Using Single Board Computers, Benjamin Sweely

Masters Theses

The objective of this project was to develop a wireless, noncontact monitoring system that measures multiple physiological parameters in human faces from a distance using a camera. Compared to traditional sensors, this monitoring system does not use wires or adhesives, providing a safer, more user-friendly application. The goal of the monitoring systems was to estimate heart rate (HR). The current practices of measuring HR involve collecting electrocardiogram (ECG) signals from adhesive electrodes placed on various parts of the body and using a pulse oximeter (PO) typically placed on the ear lobe or finger. We were able to successfully create 2 …

Design Of A Robotic Instrument Manipulator For Endoscopic Deployment, Ryan Ponten

Masters Theses

This thesis describes the initial design process for an application of continuum robotics to endoscopic surgical procedures, specifically dissection of the colon. We first introduce the long-term vision for a benchtop dual-instrument endoscopic system with intuitive haptic controllers and then narrow our focus to the design and testing of the instrument manipulator itself, which must be actuated through the long, winding channel of a standard colonoscope.

Based on design requirements for a target procedure, we analyze simulations of two types of continuum robots using recently established kinematic and mechanic modeling approaches: the concentric-tube robot (CTR) and the concentric agonist-antagonist robot …

An Economic Evaluation Of A Biofuel Supply Chain Utilizing Multiple Feedstocks, Huaqi Zhang

Masters Theses

Biomass is considered as one potential feedstock for biofuel production. However, the high cost of biomass-to-biofuel supply chain, attributed to biomass’s low bulk density and resulting harvest, storage, and transportation challenges, has been a major hindrance to the success of biomass-based biofuel industry. In addition, the issue of dry matter losses during storage for a feedstock has affected biomass quantity and quality if the feedstock is stored for several months after a single harvest in a year. One potential way to improve the economics of biomass supply chain is to reduce storage need and enhance the utilization of harvest equipment …

Fluorochlorozirconate Glass Ceramics For Computed Radiography, Adam Wesley Evans

Masters Theses

Heat treating fluorochlorozirconate (FCZ) glasses nucleates nanocrystals in the glass matrix, resulting in a glass ceramic that has optical properties suitable for use as a medical imaging plate. As the temperature of heat treatment rises, the resulting FCZ glass-ceramic becomes increasingly more opaque as the size of the orthorhombic phase BaCl­₂[barium chloride] nanocrystals grow within the glass matrix. This opaqueness negatively affects imaging. The effect of adding Fe³⁺[iron] on the valence state of zirconium and overall glass quality was investigated.

Samples were synthesized and characterized with differential scanning calorimetry to determine the temperature of the orthorhombic …

A Feasibility Study Of Just-In-Time Asthma Self-Management Intervention, Phillip Charles Scruggs

Masters Theses

Quality asthma care requires not only an initial diagnosis, but long term follow up care and education on long term control. Preventable symptoms continue to reduce the quality of life for chronic asthma sufferers and place an unnecessary burden on emergency services and the health care system at large. A mobile health (mHealth) solution is proposed to effectively improve outcomes for patients while ultimately reducing the overall burden of mismanagement on the healthcare system as a whole. The Just-in-Time Asthma Self- Management and Intervention (JASMIN) system provides a way for a patient or user to track, self-manage, and interact with …

Magnetism Of Magnetite Nanoparticles As Determined By Mössbauer Spectroscopy, Hien-Yoong Hah

Masters Theses

Fe₃O₄ [Magnetite] nanoparticles have magnetism that differs greatly from their bulk counterparts. Whereas bulk Fe₃O₄ is a ferrimagnet, single-domain Fe₃O₄ nanoparticles have been found to be superparamagnetic. This allows for increased magnetization of the nanoparticles compared to the bulk when in a magnetic field. For most paramagnets, magnetization requires applied fields of a few Tesla at low temperatures. This is achievable through the application of superconducting magnets. In superparamagnets, the high susceptibility of the particles allows magnetization through a Nd-Fe-B permanent magnet at room temperature. This is caused by an increased …

Icloudecg: A Mobile Cardiac Telemedicine System, David S. Clifford

Masters Theses

With rising healthcare costs and a substantially growing number of patients 65 or over, the benefits of telemedicine and patient self-monitoring systems are becoming increasingly evident. Patients, physicians, hospitals, and even insurance providers benefit from vigilant, cost-effective patient monitoring systems. This thesis describes the development of a portable, smart-phone connected system for continuous cardiac monitoring. The system is capable of continuously monitoring the conditions of the heart, automated detection of cardiac arrhythmias, and real-time notifying patients and physicians of the detected abnormalities. The system consists of four main subsystems: 1) a Bluetooth capable chest-strap ECG, 2) an Android-enabled mobile device, …

Removal Of Trace Organic Compounds In Domestic Wastewater Using Recirculating Packed-Bed Media Filters, Brittani Nikole Perez

Masters Theses

Pharmaceuticals and personal care products (PPCPs) are commonly detected in the environment resulting from their survival from conventional wastewater treatment systems. More information is needed about the fate and transfer of these trace organic compounds in domestic wastewater and their associated risks so that efficient strategies for their removal can be developed for both large/small scale treatment systems. This study aimed to determine whether onsite wastewater treatment systems were capable of providing PPCP removal, in addition to quantifying different forms of removal (biodegradation/sorption). A column study was constructed to determine the removal efficiencies of 3 target PPCPs, endocrine disrupting compound …

Effects Of Varus Knee Alignment And Using Toe-Cages On Frontal Plane Knee Biomechanics In Stationary Cycling, Guangping Shen

Masters Theses

Effects of varus knee alignment on the internal knee abduction moment (KAM) in walking has been widely studied. KAM has been shown to be closely associated with the development of medial knee osteoarthritis (OA). Despite the importance of the knee alignment, no studies have explored its effects on knee frontal plane biomechanics during stationary cycling. The purpose of this study was to examine the effects of varus knee alignment and using a toe-cage on the knee frontal plane biomechanics during stationary cycling. Eleven participants in each of the varus and neutral groups participated in the study. The participants performed in …

Biodegradable Nano-Hybrid Polymer Composite Networks For Regulating Cellular Behavior, Charles Henley Sprague

Masters Theses

Photo-crosslinkable polymeric biomaterials have emerged in the field of biomedical research to promote tissue regeneration. For example, scaffolds that can be crosslinked and hardened in situ have been known to make suitable implant alternatives. Since injectable and photo-crosslinkable biomaterials offer the advantage of being minimally invasive, they have emerged to compete with autografts, a current highly invasive method to repair diseased tissue. A series of novel photo-crosslinkable, injectable, and biodegradable nano-hybrid polymers consisting of poly(ε-caprolactone fumarate) (PCLF) and polyhedral oligomeric silsesquioxane (POSS) has been synthesized in our laboratory via polycondensation. To engineer the material properties of the nano-hybrid networks, varied …

Doping Of Fluorchlorozirconate And Borate-Silica Glass Ceramics For Medical Imaging And Fast Neutron Scintillation, Julie Elizabeth Swafford

Masters Theses

Borate silica glass ceramics were produced for neutron scintillation. The Glass ceramics were doped with europium fluoride [EuF₂] and cerium chloride [CeCl₃]. Isotopic lithium fluoride [⁶LiF] and boron oxide [¹⁰B₂O₃] were used in most samples while non-isotopic lithium fluoride [LiF] and boron oxide [ B₂O₃] were used in the rest. When exposed to a neutron beam, samples doped with europium fluoride [EuF₂] scintillated while samples doped with cerium chloride [CeCl₃] did not. This contradicts current literature on fast scintillation. What …

A Low-Power Approach For Front End Biological Signal Conditioning, Logan Smith Taylor

Masters Theses

In a lab-on-a-chip (LOC) application, the measurement of small analog signals such as local temperature variation often involves detection of very low-level signals in a noisy micro-scale environment. This is true for other biomedical monitoring systems as well. These systems observe various physiological parameters or electrochemical reactions that need to be tracked electrically. For temperature measurement pyroelectric transducers represent an efficient solution in terms of speed, sensitivity, and scale of integration, especially when prompt and accurate temperature monitoring is desired.

The ability to perform laboratory operations on a small scale using miniaturized LOC devices is a promising biosensing technique. The …

Joint Reaction Force And Contributions Of Surrounding Muscles To Knee Joint Load During Stair Ascent In Total Knee Replacement Patients And Healthy Individuals, Robert Jacob Rasnick

Masters Theses

Total knee replacement (TKR) is commonly used to correct end stage knee osteoarthritis (OA) of the knee joint. Unfortunately, difficulty with stair climbing has been seen to exist, prolonging the challenges of TKR patents. Complete understanding of loading at the knee is of great interest in order to aid patient populations, implant manufacturers, rehabilitation, and future research. The outcome of a TKR is intended to reestablish normal motion and loading of the knee. Musculoskeletal modeling provides a means to accurately approximate joint loading and the corresponding muscle contributions during a movement.

The purpose of the present study was to examine …

An Implantable Low Pressure Biosensor Transponder, Chad Eric Seaver

Masters Theses

The human body’s intracranial pressure (ICP) is a critical element in sustaining healthy blood flow to the brain while allowing adequate volume for brain tissue within the relatively rigid structure of the cranium. Disruptions in the body’s maintenance of intracranial pressure are often caused by hemorrhage, tumors, edema, or excess cerebral spinal fluid resulting in treatments that are estimated to globally cost up to approximately five billion dollars annually. A critical element in the contemporary management of acute head injury, intracranial hemorrhage, stroke, or other conditions resulting in intracranial hypertension, is the real-time monitoring of ICP. Currently such monitoring can …

Automated Fragmentary Bone Matching, Ali Saad Mustafa

Masters Theses

Identification, reconstruction and matching of fragmentary bones are basic tasks required to accomplish quantification and analysis of fragmentary human remains derived from forensic contexts. Appropriate techniques for three-dimensional surface matching have received great attention in computer vision literature, and various methods have been proposed for matching fragmentary meshes; however, many of these methods lack automation, speed and/or suffer from high sensitivity to noise. In addition, reconstruction of fragementary bones along with identification in the presence of reference model to compare with in an automatic scheme have not been addressed. In order to address these issues, we used a multi-stage technique …

An Investigation Of Rare Earth Co-Doping In Fluorochlorozirconate Glass-Ceramic Imaging Plates To Improve The Storage Phosphor Properties For Computed Radiography, Sharon Gray

Masters Theses

Computed radiography is a standard medical imaging technology that uses photostimulable storage phosphor imaging plates to create an image. X-rays create electron hole pairs within the plate which recombine upon stimulation by a laser, producing light which is read out and stored as a digital image. Modern imaging plates contain an active layer of crystalline storage phosphors embedded in a polymer binder. The resolution of images from these plates is reduced due to light scattering at grain boundaries during readout. Fluorochlorozirconate (FCZ) glass-ceramic imaging plates containing BaCl₂:Eu²⁺ [barium chloride] [europium]nanocrystals in the orthorhombic phase have been developed …

Melt Blown Poly(Lactic Acid) For Application As A Tissue Engineering Scaffold, William Horst Gazzola

Masters Theses

Poly(lactic acid) (PLA) was melt blown (MB) under varying processing conditions to create webs with micro and nano-architecture. Processing parameters varied were primary air flow rate and collector distance. In total, twenty-one webs were produced and the physical properties of the webs were investigated including, mean fiber diameter and fiber diameter distribution, mean pore diameter and pore size distribution, web thickness, degree of crystallinity, tensile modulus and degradation rate. Four webs, two with micro and two with nano-architecture, thought suitable for use as tissue engineering scaffolds were selected for seeding with A375 human malignant melanoma cells. Cell culture was conducted …

A Novel Free Form Femoral Cutting Guide, Wesley Andrew Underwood

Masters Theses

Knee arthoplasty is a common procedure that requires the removal of damaged bone and cartilage from the distal femur so that a reconstructive implant may be installed. Traditionally, a five planar resection has been accomplished with a universal cutting box and navigated with either metal jigs or optically tracked computer navigation systems. Free form, or curved, resections have been made possible with surgical robots which control the resection pathway and serve as the navigation system. The free form femoral cutting guide serves as a non powered framework to guide a standard surgical drill along an anatomically defined pathway, resulting in …

Comparative Study On Posture And Its Influences On Horizontal Ground Reaction Forces Generated By Muscles: Implications For Crouch Gait, Hoa Xuan Hoang

Masters Theses

Crouch gait decreases walking efficiency due to the increased knee and hip flexion during the stance phase of gait. Crouch gait is generally considered to be disadvantageous for patients with cerebral palsy; however, a crouched posture may afford biomechanical advantages that lead some patients to adopt a crouch gait.

To investigate one possible advantage of crouch gait, a musculoskeletal model created in OpenSim was placed in 15 different postures from upright to severe crouch during initial, middle, and final stance of the gait cycle. A series of optimizations were performed for each posture to maximize ground reaction forces for the …

Applications Of Nanoparticle Image Velocimetry In Nanofluids, Sara Salim Haque

Masters Theses

Particle Image Velocimetry (PIV) is an optical technique used for the visualization of fluid flow. PIV can be combined with other techniques to enhance the analysis of fluid flow. A novel far-field plasmonic resonance enhanced nanoparticle-seeded Particle Image Velocimetry (nPIV) has been demonstrated to measure the velocity in a micro channel. Chemically synthesized silver nanoparticles have been used to seed the flow. By using Discrete Dipole Approximation (DDA), plasmonic resonance enhanced light scattering has been calculated for spherical silver nanoparticles with diameters ranging from 15 nm to 200 nm in two media: water and air. The diffraction-limited plasmonic resonance enhanced …

Seasonal Initial Concentrations And In-Field Decay Rates Of Escherichia Coli And Bovine Bacteroidetes In Beef Cattle Manure, Jiangwei Liu

Masters Theses

Eight naturally deposited beef cow manure patties were sampled during summer (July 19 to August 9, 2010), fall (October 26 to November 19, 2010), winter (January 14 to February 18, 2011), and spring (May 5-27, 2011) to determine whether hypothesized seasonal differences existed in the initial concentrations and decay rates of Escherichia coli (E. coli) and bovine Bacteroidetes (BoBac). E. coli concentrations were estimated as culturable colony forming units (CFU) and with a quantitative polymerase chain reaction (qPCR) assay targeting the 23S ribosomal gene. BoBac was quantified with a qPCR assay targeting a 16S ribosomal gene sequence associated …

Positron Emission Tomography (Pet) For Flow Measurement, Bi Yao Zhang

Masters Theses

Positron Emission Tomography (PET) is frequently used for medical imaging. Maturity and flexibility of PET as an imaging technique has expanded its utility beyond the medical domain. It can be used as a tool for fluid flow studies in opaque fluids and for flow within complex geometry where conventional optical flow measurement approaches fail. This study explores the capabilities of PET as flow measurement tool suited to validation of computational fluid dynamic (CFD) predictions.

The MicroPET P4 scanner was used to image the diffusion process in flow around a rod bundle geometry similar to that found in a nuclear reactor …

Synthesis And Characterization Of Diamond-Like Carbon Thin Films For Biomedical Applications, Russell Lee Leonard

Masters Theses

Diamond-like carbon (DLC) thin films were produced by pulsed laser deposition (PLD) on silicon, fused silica, and silicon nitride substrates. The films produced were either undoped, made using a pure graphite target, or doped, using multi-component targets made from a combination of graphite and silicon, silicon nitride, titanium dioxide, or silicon monoxide. These films were evaluated for their potential use in biomedical applications, including coatings for artificial joints, heart stents, and bronchoscopes. The films were characterized by Raman spectroscopy, atomic force microscopy, ball-on-flat tribometry, contact angle measurements, and spectrophotometry. Film thickness was determined by optical profilometry. Film adhesion was checked …