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Opening The Black Box: Soil Microbial Communities In Field-Based Plant-Soil Feedback Experiments, Julia Kate Aaronson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Plant-soil feedback is a process through which plants modify the properties of their associated soils, affecting their growth. PSF can play a key role in regulating plant growth and communities including altering plant invasion, rarity, and abundance. However, our understanding of the soil organisms that drive these plant growth responses is limited. Most studies treat soils as a ‘black box’ and do little to reveal which specific microbes or microbial communities may be responsible. This chapter examines two recent large PSF field experiments conducted in Minnesota, USA, and Jena, Germany. These experiments revealed that plants altered their soils, changing subsequent …

Determination Of The Structure, Function, And Mechanism Of Type Iv Crispr-Cas Prokaryotic Defense Systems, Hannah Nicole Taylor

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Bacteria are under constant threat of invasion by bacteriophage (viruses which infect bacteria). To prevent bacteriophage from entering and overtaking the bacteria, bacteria utilize defense systems to identify and destroy foreign elements. One method of defense is called CRISPR-Cas (Clustered Regularly Interspaced Short Palindromic Repeats – CRISPR-Associated). Many different bacteria and most archaea use CRISPR-Cas systems. There are many diverse types of CRISPR-Cas systems, each of which provides defense in a slightly different way. One such CRISPR-Cas type is called type IV. The type IV CRISPR-Cas system is poorly understood and there are very few studies published on type IV …

Anthropogenic Influences On Bacterial Assemblages In Stream Biofilms, Elizabeth M. Ogata

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Bacteria within biofilms are an essential component of stream ecosystems, influencing the movement of carbon (C), nitrogen (N), and phosphorus (P) in watersheds. To better understand the ecological effects of human activities on stream ecosystems, my research examined how nutrients and pharmaceuticals, common pollutants in streams worldwide, influence bacterial assemblages in stream biofilms. First, I tested how nutrients (N, P, iron) and pharmaceuticals (caffeine, diphenhydramine) influenced biofilm bacterial microbiomes (taxa present in at least 75% of samples of a contaminant treatment). Nutrients allowed taxa known for their ability to thrive in nutrient-rich environments to dominate microbiomes, pharmaceuticals supported a rich …

Use Of Fourier Transform Infrared Spectroscopy For The Classification And Identification Of Bacteria Of Importance To The Food Industry, Sarah Pegram

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The aim of this work was to use Fourier Transform Infrared Spectroscopy to characterize and identify bacteria of particular significance to the food industry. FT-IR spectroscopy is a rapid technique that can be applied to all groups of bacteria. The two objectives were to determine a suitable sampling procedure to record a spectrum and to determine a suitable statistical technique to identify characteristic regions of the spectrum associated with the genus and, potentially, the species. Pure cultures of bacteria were grown in broth, suspended in saline and dried to produce a film on a halide salt crystal. These films were …

Physiological And Biochemical Aspects Of Agrobacterium-Wheat (Triticum Aestivum L.) Interactions, David L. Parrott Jr.

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Agrobacterium tumefaciens and A. rhizogenes are the causal agents of gall or hairy root disease, but normally the bacteria do not cause disease in wheat. However, both bacteria grew without inhibition when exposed to intact or wounded wheat roots or embryos, and they colonized wheat root surfaces to levels similar to dicotyledonous plants. A. tumefaciens and A. rhizogenes induced 23% cell death after a 1-h exposure to wheat embryo cells grown in 7.4 mM O₂, while the extent of cell death at 2.1 mM O₂ was 8%. Contact with A. tumefaciens or A. rhizogenes caused cultured wheat …

Identification Of Potential Adhesins Shared Among Isolates Of Actinobacillus Species And Actinobacillus-Like Bacteria Cultured From Ram Lambs With Clinical Epididymitis, Yu-Wen Liu

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Ram lamb epididymitis, a serious reproductive disease of sheep, is caused principally by bacteria belonging to the genera Haemophilus and Actinobacillus. Six bacteria were studied: the American Type Culture Collection (ATCC) of Actinobacillus seminis (ATCC 15768), ATCC of Actinobacillus actinomycetemcomitans (ATCC 29522), field isolates of A seminis (86722 and 4101) and field isolates of Actin obacillus- like bacteria (Y136 and D107). The objectives of this study were to quantitate the adhesion of these 6 bacteria to bovine kidney epithelial cells (BKECs) and ram epididymal epithelial cells (REECs), evaluate the effect of rabbit polyclonal antibody prepared against ATCC 15768 …

Effect Of Bacterial Inoculant On Alfalfa Haylage: Ensiling Characteristics And Milk Production Response When Fed To Dairy Cows In Early Lactation, Barb Kent

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Third-cutting alfalfa hay harvested at bud stage in each of 2 yrs, treated with a live bacterial inoculant, packed in polyethylene-bonded bags and allowed to ensile. In both years, treated haylage had a lower pH, and a period effect was found for pH and mold count, regardless of treatment. In year 1, there was a period effect found for acid detergent fiber. In year 2, mean lactic-acid-producing bacteria numbers (log 10) were significantly higher for treated haylage (9.69 and 10.36) for control and treated haylage, respectively). Regardless of treatment, lactic-acid-producing bacteria numbers and water soluble carbohydrates significantly declined through time. …

Characterization Of Selected Bacteria From The North Arm Of The Great Salt Lake, John L. Crane Jr.

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Thirteen bacterial cultures were isolated from the North arm of Great Salt Lake during the months of January and February of 1973. Eleven isolates were gram-negative pleomorphic rods which lysed in hypotonic solution. The remaining two were gram-positive cocci. All isolates and one known strain of Halobacterium salinarium were subjected to examination of morphological, cultural, physiological, and biochemical characteristics. A numerical taxonomic analysis was applied to the compiled characters to compute a coefficient of similarity for each individual isolate as compared to all other isolates. A comparative analysis was included in the similarity computation using characters assembled from those reported …

Studies On Some Bacteriolytic Bacteria Isolated From An Oxidation Pond, Paul Christian Radich

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

During bacteriological studies of the Logan City Sewage Oxidation Ponds, Logan, Utah, a group of bacteria was discovered which could lyse killed cells of Escherichia coli. The present research effort was an attempt to determine whether two isolates from this earlier study might play a role in the reduction of coliforms and other bacteria in the oxidation ponds. It was also desired to characterize partially the lytic enzymes produced by the two isolates and to determine as far as possible the organisms' identity.

Both isolates were Gram negative rod-shaped organisms with a single polar flagellum. On Cytophaga agar they …