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Novel Polymorphisms Of Zrsr2 And Gpm6b Gene Homologs And Their Use In Sex Identification Of Bovine And Porcine Species, Evan K. Peterson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Accurate and cost-effective PCR based sex identification is important in animal production because it gives producers the ability to determine the sex of embryos prior to transfer, saving time and money. The most efficient PCR sex identification assays work by using a single primer pair to amplify a specific target region located on the Y-chromosome and a second, separate target region on the X-chromosome.

This thesis reports the design of two novel assays. The first assay was designed to target the Zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 (ZRSR2) gene found on the X-chromosome and its Y-chromosome …

Effects Of Wi-Fi-Enabled Smart Irrigation Controllers On Water Use And Plant Health Of Residential Landscapes In The Intermountain West, Shane R. Evans

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Residential and commercial landscapes provide home and business owners with several benefits. These benefits range from improved air quality and flood control to the reduction of noise and breakdown of organic chemicals. However, these landscapes are routinely overwatered which can lead to plant disease, nutrient pollution, and large amounts of water being wasted. Utah State University, in conjunction with the Center for Water Efficient Landscaping (CWEL), the Utah Division of Natural Resources and Weber Basin Water Conservancy District, conducted an experiment to determine if Wi-Fi-enabled smart irrigation controllers conserve water as compared to average residential irrigation amounts and manually programmed …

Examination And Empirical Forecast Of Wheat Yield In Northwest India Based On Climate And Socio-Economic Factors, Avik Mukherjee

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This study summarizes the findings of research organized in two parts. The first part includes the impact of climate and socio-economic factors that affected wheat yield in northwest India during the 2000s. The second part focused on the forecast of average wheat yield for the two highest wheat producing states Punjab and Haryana.

Initial study focused on the impact of climate factors on wheat yield in northwest India. It has been found that above normal temperature coupled with water shortage i.e. irregular irrigation and low soil moisture contributed to the prolonged yield reduction during 2002-2010.

Next, we reviewed the socio-economic …

Utilizing Earth's Microbiology To Develop The Framework For A Manufactured Martian Nitrogen Cycle, Kyle Valgardson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

History has shown us that space travel is a complicated activity not to be taken lightly. Extended missions such as those that would accompany a manned mission to Mars are guaranteed to have increased complexity and require creative solutions to problems we likely take for granted. One such issue is how to supply the necessary amount of nitrogen to the astronauts to keep them alive. Nitrogen is an essential component to life on Earth as most biological molecules, such as protein and DNA, contain a significant amount of it. Most organisms have to get it from what they eat, but …

Effect Of Biocrust Development On Establishment Of Native Plants In A Salt Desert System, Merran Owen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Salt desert shrublands are semiarid, shrub-dominated ecosystems that inhabit salt- affected soils. In Great Basin salt deserts, exotic annual plants are invading and displacing native plants. Low plant productivity and slow population growth of native plants in these ecosystems makes them vulnerable to invasion and limits their ability to compete with invasive plants and return to a natural state. Active revegetation efforts, such as planting and direct seeding of native plants, are often unsuccessful for the same reasons. Biological soil crusts (communities of cyanobacteria, lichen, moss, microfungi and other microorganisms that live on the surface layer of the soil) are …

Water Use In Jujube (Ziziphus Jujuba) With Applications In Irrigation Timing And Quantity, Preston S. Colver

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Jujube (Ziziphus jujuba) is a major fruit crop in China where it has been a favored cash crop and successfully used to address erosion problems in the Loess Plateau region of western China. Further use of jujube in forestry projects and improved agricultural efficiency are very promising. This study sought to repeat a water-use study in two climates: a hot, semi-arid climate in Yangling, Shaanxi, China and a dry-summer, continental climate in Logan, Utah, USA. The study took physiological measurements on the trees with the aim of characterizing the way that jujube uses water. This would help to …

Demographics, Accuracy, And Impact Of Feed Laboratories In The United States, Jerald H. Severe

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Feed analysis is very important to modern society. In the United States feed analysis is used to optimize production of food animals. Feed analysis is also used as a tool to place value on crops. As important as feed analysis is to society, little research has been done that describes which feed laboratories are the most popular and why people use them. It has been thought by some patrons that different results from the same feed sample are obtained by different laboratories. Is this true? If so, what is the effect on those that use feed laboratories to produce animals, …

Nodulation And Growth Of Shepherdia × Utahensis ‘Torrey’, Ji-Jhong Chen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Shepherdia ×utahensis ‘Torrey’ (Elaeagnaceae) is a hybrid of two native actinorhizal plants in the Intermountain West, S. argentea (silver buffaloberry) and S. rotundifolia (roundleaf buffaloberry). Due to actinorhizal symbiosis, atmospheric nitrogen (N₂) can be converted to ammonium, a bioavailable form. Actinorhizal plants have great value in sustainable nursery production and urban landscape use. However, nitrogen fertilizer negatively affects the nodulation of actinorhizal plants. As a newly developed hybrid, both the symbiont identity and nodule formation of S. ×utahensis ‘Torrey’ remain largely unknown. Therefore, experiments were conducted to investigate the nodule formation of S. ×utahensis ‘Torrey’ inoculated with field …

Rumen Fermentation Responses To Purified Palmitic, Stearic, Or Oleic Fatty Acids And The Impact Of A Palmitic Acid-Enriched Supplement On Animal Performance, Austin Paul Sears

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Our research examined the responses of palmitic, stearic and oleic fatty acids on neutral detergent fiber (NDF) digestibility and rumen fermentation and the impact of a palmitic acid-enriched supplement on animal performance. In the first research chapter, we evaluated the effect of purified palmitic, stearic, and oleic fatty acids on NDF digestibility and rumen fermentation. Palmitic acid increased NDF digestibility and total production of volatile fatty acids (VFA) compared with oleic acid. Bacterial fatty acid composition was altered by palmitic acid, increasing anteiso-C15:0, C18:2n6 and C18:3n3 fatty acids compared with oleic acid. Compared with control, …

Assessing The Effects Of Cold Storage Regimes Of North American Bombus Queens: Long Live The Humble Queen, Thuy - Tien Thai Lindsay

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Bumble bees (Bombus) provide critical pollination services for wild plants and crops. They are generalist pollinators, and do not depend on one singular floral type. Native bumble bees are adapted to pollinating many native plants, such as blueberries, squash, and tomatoes. A critical component of bumble bee pollination in the greenhouse tomato industry is the domestication of commercially bred colonies. However, the domestication of Bombus is pretty early in its development, and not all aspects of the bumble bee life cycle is fully understood. This thesis addresses one of the major obstacles in domestication, which is successful mimicking …

Influences Of Forest Edges On The Growth And Health Of Old-Growth Coast Redwood Forests, Cody R. Dangerfield

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Coast redwood (Sequoia sempervirens) is the tallest species in the world, frequently attaining heights greater than 300 ft. The unique characteristics of the redwoods has led to the establishment of several preservation areas including national and state parks. However, abrupt forests edges created by previous logging and landcover changes has left the remaining stands exposed to elevated temperature, sunlight, and wind intensities, thereby making redwoods along the forest edge more susceptible to windthrow and drought stress. Despite the rarity of old-growth coast redwood forests and their ecological and cultural significance, very few studies have investigated how forests edges …

Classification And Prediction Models For Natural Streamflow Regimes In The Arid Southwestern Usa, Angela M. Merritt

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Understanding how natural variation in flow regimes influences stream ecosystem structure and function is critical to the development of effective stream management policies and actions. Spatial variation in flow regimes is well understood for stream reaches in mesic regions, but a more robust characterization of flow regimes in arid regions is needed, especially to support biological monitoring and assessment programs. Methods are specifically needed that can accurately predict the flow regime expected at ungauged reaches. We used long-term (41 y) records of mean daily flow from 287 stream reaches in the arid western USA to develop and compare several alternative …

The Consequences Of Environmental Properties And Tree Spatial Neighborhood On Post-Fire Structure Of Forest In Yosemite National Park, Jelveh Tamjidi

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Separating the contribution of habitat filtering and dispersal mechanisms in forming species distribution remains a challenge in community ecology. Despite the effect of environmental variables in structuring communities, only restricted numbers of them were considered as a habitat dissimilarity.

In Chapter 2, I used topography and soil properties to define habitats within the Yosemite Forest Dynamics Plot (YFDP). The soil enzymes were added in soil samples due to their important role in releasing nutrients into the soil environment. The preference of eleven species to a specific habitat were examined. Also, the relative importance of habitat filtering and dispersal limitation were …

Soil Health, Phosphorus And Carbon Dynamics In Response To A One-Time Compost Application And Cover Crops In Organic Dryland Winter Wheat, Idowu Ademola Atoloye

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Organic dryland winter wheat (Triticum aestivum) growers in the U.S. are faced with high interannual variability in yields. This is related to the low annual precipitation and low soil fertility on the cultivated soils. Improving soil health is the key to increasing and maintaining crop yields. In this study, we compared the effects of different rates (0, 12.5, 25 and 50 Mg DW ha^-1 compost and 2 Mg ha manure^-1) of large quantities of steer manure compost and the inclusion of cover crops versus fallow on soil health and on carbon and phosphorus dynamics in …

The Role Of The Recently Deorphanized G-Protein Coupled Receptor, Gpr171, In Morphine Tolerance And Withdrawal, Leela Afrose

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Opioid analgesics, such as morphine, represent the gold standard pain killer and the most frequently used drugs for the treatment of moderate to severe pain. Despite being a potent analgesic, morphine has unwanted and dangerous side effects with repeated use, such as tolerance and withdrawal. Tolerance is a state when a person no longer responds to a drug and a higher dose is required to achieve the same initial pain relief. Withdrawal is a set of undesirable psychological and physiological symptoms that occur after someone stops taking a drug or reduces the dose. Morphine tolerance and withdrawal play a vital …

Fruit Tree Responses To Water Stress: Automated Physiological Measurements And Rootstock Responses, William D. Wheeler

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

New orchard plantings utilize trees grafted to dwarfing rootstocks planted close together to facilitate larger harvests. These dwarfing rootstocks have not been comprehensively studied for their ability to withstand drought. This is of special importance in the Intermountain West which has limited rainfall. Additionally, orchard growers face competition for water from a growing population and increased uncertainty in rainfall from climate change. My research examined the use of dendrometers, which measure changes in trunk diameter, and sap flow sensors, which measure how quickly sap moves, as methods to inform growers about tree water status. I also used a weighing lysimeter …

Effects Of Premortem Stress On Heat Shock Protein Abundance, Oxidation, And Color In The Longissimus Lumborum Of Holstein Steers Following Harvest, Reganne K. Briggs

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Consumers consider tenderness and steak color to be two important attributes associated with meat quality. However, inconsistencies in both tenderness and steak color remain despite similar production practices of beef cattle. Stressful events before harvest may impact meat quality by initiating certain pathways such as abundance of heat shock proteins (HSP) and oxidation within the skeletal muscle. Heat shock proteins have been associated with tenderness while oxidation may affect steak color and flavor. In this study, 40 Holstein steers were administered adrenocorticotrophic hormone (ACTH) to mimic a stressful event before harvest. Animals were harvested at different times following the ACTH …

Assessment Of Compost On Dryland Wheat Yield And Quality, Soil Fertility And Water Availability In Utah, Kareem A. Adeleke

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In 2014-2016 Kareem Adeleke undertook a graduate project under the supervision of Utah State University (USU) Plants, Soils and Climate professors, Drs. Jennifer Reeve, Astrid Jacobson, and Earl Creech. Organic wheat producers face numerous challenges, such as low soil moisture, soil erosion, and low soil fertility. Organic wheat growers generally do not apply fertilizer due to inability to recoup the costs in the short-term. Compost enhances long-term improvement in soil quality, soil fertility and increase yield in low input environments. Understanding of compost carryover effects in dryland wheat systems is necessary for increased yield that will allow adequate supply of …

Selection And Propagation Of Pinyon Pine, Kylie M. Lawson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Single-leaf pinyon pines are drought tolerant trees native to the Great Basin. This species is a source of wild-collected, edible pine nuts that are in great demand. With no previous research apparent, this thesis aimed to identify wild trees with high cone production as sources for evaluating grafting onto immature and mature trees. Wild sources of scions were identified from four wild stands and six trees per stand. Counting and analyzing the number of scars left by mature cones along the leader branch provided an estimate for each tree‚Äôs productivity and identified trees with greater productivity within a stand. The …

Propagation Of Two Utah Native Plants: Ceanothus Velutinus And Cercocarpus Montanus, Asmita Paudel

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Among various water conservative approaches, the use of native plants in landscape, such as Ceanothus velutinus (snowbrush ceanothus) and Cercocarpus montanus (alder-leaf mountain mahogany), is attractive. Efficient propagation methods are required to allow these native species to use in water-efficient landscaping. Sexual (seed) and asexual/vegetative (cuttings and micropropagation) propagation methods were evaluated.

Seeds of both C. velutinus and C. montanus were scarified and/or stratified and treated with gibberellic acid (GA₃) to break dormancy. The results showed hot water scarification and 2-3 months of stratification effectively broke the dormancy of C. velutinus seeds, and stratification for 2-3 months was …

Applied Species Delimitation In Microbial Taxa And Plants, Austin C. Koontz

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Species are a fundamental concept in biology, and many subdisciplines in biology utilize species in aspects of theory and in the communication of results. Given the centrality of species in biological science, it can seem surprising that there is no universal definition amongst biologists of what, strictly speaking, a species is. In fact, there are, by some estimates, over 20 different "species concepts", and this lack of a consensus is termed "the species problem". This problem has theoretical underpinnings, but has become more relevant as advances in sequencing technologies over the past two decades have allowed researchers to probe the …

Habitat, Diet, And Foraging Ecology Of Willow Flycatcher In Sierra Nevada Meadows, Scott E. Dietrich

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The last stronghold of the California Willow Flycatcher (Empidonax traillii) population, which exists in the Sierra Nevada, continues to decline, necessitating a clearer understanding of how meadows provide habitat for the species. To gain this understanding, we assessed vegetation type, saturation levels, and invertebrate species at 51 different sites within four meadows located in the Little Truckee River drainage. 17 of these sites were occupied by nesting Willow Flycatcher during the time of the study, 17 sites had been occupied by nesting Willow Flycatcher in annual surveys between 1997 and 2010 but are no longer used, and 17 …

Leadership Styles And Barriers To Leadership For Women In Agriculture: A Mixed Methods Study, Erica Ramsey Louder

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Women are a growing demographic in agriculture, yet women holding positions in agricultural leadership is limited. This research sought to identify the ways women in agriculture lead by examining their leadership styles and the barriers they face as they strive to advance within their professions.

The results show that women are relationship-based leaders and that there are significant barriers that inhibit women’s advancement in agriculture. Many of these barriers are related to gender bias, self-perception, and life issues such as stress and workload.

Reusable Light-Activated Antimicrobial Materials Prepared With Food Ingredients, Andrew T. Gagon

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Microbial contamination and proliferation in food processing, distribution and storage continues to be a real risk in spite the wide variety of food processing and preservation techniques available. Some of these techniques (such as heat treatments and the use of chemical preservatives) may require substantial amounts of energy and their effects in the general population and the environment may be harmful. This has generated an interest over alternative methods of food preservation. The use of reusable light-activated materials may represent an effective approach. In this study, a polypropylene plastic was modified with either zein, which is found in corn, or …

Influence Of Forage Diversity And Condensed Tannins On Livestock Foraging Behavior, Production And Environmental Impact, Sebastian P. Lagrange

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Eating a combination of forages with different chemistries (i.e., nutrients, beneficial compounds such as tannins) may enhance ruminant nutrition and reduce environmental impacts relative to eating single forages. I explored the influence of offering sheep and cattle all possible combinations of tanniferous (i.e., plants with tannins; birdsfoot trefoil, sainfoin) and non-tanniferous legumes (i.e., plants without tannins; alfalfa) or their monocultures on animal performance, behavior, and methane and nitrogen (N) emissions. Offering choices among these legumes to penned sheep improved intake and diet digestibility relative to feeding monocultures. Mixtures selected by sheep were better digested than mixtures containing equal parts of …

Improving Our Ability To Estimate Vital Rates Of Endangered Fishes On The San Juan River Using Novel Applications Of Pit-Tag Technology, J. Benjamin Stout

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Estimating demographic parameters, such as survival and abundance, with accuracy and precision is vital for detecting trends in populations and assessing the effectiveness of management actions. In most cases, a lack of capture data make estimating parameters very challenging. The use of new technologies to increase the amount of remotely collected data is increasing, but brings new limitations and analytical issues to be resolved. One of those new technologies is the use of a mobile floating PIT-tag antenna to detect PIT-tagged fish. The issue that arises with this technology is determination of the status of detected tags (i.e., live fish …

Response Of Glyphosate-Resistant Alfalfa To Glyphosate Application In The Intermountain West, Logan Chet Loveland

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Glyphosate-resistant (GR) alfalfa (Medicago sativa L.) has been widely adopted in the Intermountain West United States, where alfalfa plays an important role in agriculture. Exceptional tolerance to glyphosate application has been a reported strength of this technology; however, growers have recently reported potential crop injury under certain environmental conditions. The purpose of this study was to document and characterize the injury, identify local conditions that may have contributed to crop injury, and determine best management practices for avoiding injury to GR alfalfa in the Intermountain West. The effects of glyphosate rate and application timing were investigated at 24 sites …

The Effects Of Gene Therapy In An Ovine Osteoarthritis Model, Crystal Collier

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Humans rely on the health of their joints for stability and mobility in daily life. In a normal, healthy functioning joint, complex processes maintain joint tissues, including remodeling, lubrication, and immune function among many other tasks. Osteoarthritis (OA) is the most common joint disorder in the U.S. It becomes most prevalent in adults 60+ years of age and causes decreased mobility, discomfort, and in some cases, excruciating pain. In the biological processes of osteoarthritis, the metalloproteinase enzymes responsible for the degeneration of cartilage are upregulated. The inhibitors of metalloproteinase activity are known as Tissue Inhibitor of Metalloproteinases (TIMPs), which keep …

Enhancing The Production And Sustainability Of Pasture-Fed Beef Using Non-Traditional Legume Forages, Andrea I. Bolletta

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Despite the increasing worldwide demand for beef as a protein source, consumers are concerned about the sustainability of ruminant production systems. Their main concerns are animal welfare for feedlot-fed animals, greenhouse gas (GHG) emissions, global warming and worker safety. Traditional feedlot-based beef production systems have been associated with locally greater levels of soil, water and air contamination, as well as the overuse of antibiotics and growth hormones. The use of legume pastures such as cicer milkvetch (CMV) and birdsfoot trefoil (BFT), which fix their own nitrogen (N) and often contain beneficial secondary compounds such as tannins and provide for rapid …

Ecology And Economic Impact Of The Invasive Brown Marmorated Stink Bug (Hemiptera: Pentatomidae; Halyomorpha Halys) In The Utah Agricultural Landscape, Zachary R. Schumm

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The brown marmorated stink bug (BMSB) is a major insect pest that causes economic loss to a diversity of U.S. fruit and vegetable crops, and invades homes and human structures, causing nuisance issues for homeowners. This destructive insect causes millions of dollars of crop damage annually, and is difficult to manage due to its resistance to some common insecticides. BMSB is a relatively new pest to Utah, and its biology and ecology is not well known in the high elevation, arid Intermountain West region. In Chapter II, I explored the potential impact of BMSB to tart cherry, an unstudied crop …