Digital Commons Network^™

Protecting Return Address Integrity For Risc-V Via Pointer Authentication, Yuhe Zhao

Masters Theses

Embedded systems based on lightweight microprocessors are becoming more prevalent in various applications. However, the security of them remains a significant challenge due to the limited resources and exposure to external threats. Especially, some of these devices store sensitive data and control critical devices, making them high-value targets for attackers. Software security is particularly important because attackers can easily access these devices on the internet and obtain control of them by injecting malware.

Return address (RA) hijacking is a common software attack technique used to compromise control flow integrity (CFI) by manipulating memory, such as return-to-libc attacks. Several methods have …

Blockchain Design For A Secure Pharmaceutical Supply Chain, Zhe Xu

Masters Theses

In the realm of pharmaceuticals, particularly during the challenging times of the COVID-19 pandemic, the supply chain for drugs has faced significant strains. The increased demand for vaccines and therapeutics has revealed critical weaknesses in the current drug supply chain management systems. If not addressed, these challenges could lead to severe societal impacts, including the rise of counterfeit medications and diminishing trust in government authorities.

The study identified that more than the current strategies, such as the Drug Supply Chain Security Act (DSCSA) in the U.S., which focuses on unique authentication and traceability codes for prescription drugs, is needed to …

Use Of Unoccupied Aerial Vehicle (Drones) Based Remote Sensing To Model Platform Topography And Identify Human-Made Earthen Barriers In Salt Marshes, Joshua J. Ward

Masters Theses

Elevation is a foundational driver of salt marsh morphology. Elevation governs inundation and hydrological patterns, vegetation distribution, and soil health. Anthropogenic impacts at grand scales (e.g., rising sea levels) and local scales (e.g., infrastructure) have altered the elevation of the salt marsh surface, changing the topography and morphology of these ecosystems. This study establishes and assesses means to document and analyze these impacts using Unoccupied Aerial Vehicle (UAV) based remote sensing to model platform topography. This thesis’s first and primary study presents and compares methods of producing high-resolution digital terrain models (DTMs) with UAV-based Digital Aerial Photogrammetry (DAP) and Light …

Multi-Method Approach To Assess The Impact Of Off-Fault Deformation During Fault Evolution, Christ Faviana Ramos Sanchez

Masters Theses

Scaled physical experiments using analog materials that simulate deformation processes in the Earth’s crust provide direct observations of deformation during strike-slip fault evolution. Carefully scaled experiments allow us to directly observe millions of years of deformation within hours and document the behavior of experimental faults. My thesis is composed of three distinct chapters that use scaled physical experiments to help us better understand partitioning of deformation on and off of strike-slip faults within the Earth’s crust. For my first project, I built a workflow that allows the measurement of off-fault deformation manifested as vertical motions along faults. When combined with …

Evaluation Of Antioxidant Strategies In Low-Moisture Foods, Vinatee Patil

Masters Theses

Lipid oxidation in foods is vastly studied and yet less is known about lipid oxidation mechanisms in low-moisture food systems. Low-moisture foods are comprised of almost all snacks. Most of these snacks are baked or deep-fried foods consisting of a major chunk of saturated fat in consumers’ diets. Therefore, the goal is to improve the nutritional profile of these products to ultimately deliver a healthy product to the consumer. Replacing saturated fats with healthy unsaturated fatty acids is a challenge the food industry faces daily due to oxidative stability.

This study aims to mimic and optimize the industrial cracker model …

Buffering Effects Of Negative Intergroup Contact Through Complex Social Identities, Liora Morhayim

Masters Theses

Although negative intergroup contact occurs less frequently than positive contact, negative contact can more strongly influence outgroup attitudes and behaviors due to the effect of category salience in the generalization process. The present study (N =306) tests whether being aware of an outgroup member’s complex social identity will serve as a buffer against the adverse impact of a negative intergroup contact experience on outgroup attitudes. In a 3X2 between-subjects design, social identity complexity (SIC) of an outgroup confederate (high versus low versus control) and the valence of contact (neutral versus negative) were manipulated. Participants interacted with an outgroup confederate …

Unraveling Intermolecular Vwfa1-Gp1bα And Vwf C4-Gp2b3a Interactions Using Atomic Force Microscopy, Sherly Makar

Masters Theses

Von Willebrand factor (VWF) is one of the largest and most complex glycoproteins. It is the main player in maintaining hemostasis at injury sites in the blood vessels as it bridges the interaction between blood platelets and the extracellular matrix (ECM). VWF acts as a mechanosensor in high-shear surroundings, leading to a conformational change in its domains. VWF is a mosaic protein with many different domains that are receptors to the proper ligands on the blood platelets. The A1 domain is the initial point of contact between the VWF and the blood platelets as it binds to the glycoprotein 1b- …

Investigating The Role Of Got2 In Murine Organogenesis And Placenta Development, Olivia Macrorie

Masters Theses

According to the Knockout Mouse Project (KOMP), loss of glutamatic oxaloacetic transaminase 2 (Got2) results in lethality between embryonic day (E) 9.5 and E12.5, which is a critical period for organ and placenta development. The first aim of this project is to characterize the KOMP-generated Got2 null allele. In situ hybridization reveals that while Got2 is ubiquitous throughout much of the embryo, it is highly expressed in the liver and throughout the developing labyrinth layer of the placenta by E9.5. While Got2^-/- embryos are lethal at E10.5, at E9.5 Got2-deficient embryos have pharyngeal arch defects, do not turn properly, …

Extracting Dnn Architectures Via Runtime Profiling On Mobile Gpus, Dong Hyub Kim

Masters Theses

Due to significant investment, research, and development efforts over the past decade, deep neural networks (DNNs) have achieved notable advancements in classification and regression domains. As a result, DNNs are considered valuable intellectual property for artificial intelligence providers. Prior work has demonstrated highly effective model extraction attacks which steal a DNN, dismantling the provider’s business model and paving the way for unethical or malicious activities, such as misuse of personal data, safety risks in critical systems, or spreading misinformation. This thesis explores the feasibility of model extraction attacks on mobile devices using aggregated runtime profiles as a side-channel to leak …

Structural Racism, Black Out-Group Preference, And Mental Health, Alexander J. Kellogg

Masters Theses

Structural racism has increasingly been implicated as a root cause of racial disparities in health and well-being. Specifically, areas where White Americans hold more negative attitudes toward Black Americans have been associated with both anti-Black discrimination and poorer Black physical and mental health. However, previous research has relied on cross-sectional designs and has neglected the potential effects of Black community-level attitudes on mental health. We hypothesized that higher aggregate pro-White bias among White Americans would be associated with higher implicit out-group preference among Black residents living in the same communities, above and beyond the effects of traditional measures of structural …

An Antiviral Response Unleashed: Deciphering The Relationship Between Shiftless And Rna Granules During Kshv Infection, David C. Hatfield

Masters Theses

Herpesviruses persist as a parasitic actor among many species. These viral agents can rapidly seize control over host cells by influencing global gene expression. Through a process known as host shutoff, herpesviruses cause a widespread degradation event of host transcripts within the cytoplasm. Specifically, Kaposi Sarcoma associated herpesvirus (KSHV) encodes for an endoribonuclease, termed SOX, that orchestrates this manipulation of gene expression. We and others have discovered certain transcripts that escape this fate; we suggest that this is an active escape, where transcripts have 3’ UTR elements that disallow SOX cleavage. One of the escapees that has been found is …

'Our Sacred Rights': The Southern Baptist Convention And The Rhetoric Of Oppression, 1845 And Present Day, Katlyn Durand

Masters Theses

My master’s thesis focuses on the endurance of white supremacy and patriarchy in the Southern Baptist Convention (SBC), founded in 1845 and currently the largest Protestant denomination in the United States. I look at two moments in the SBC’s history and place these moments within their broader contexts to elucidate the political and cultural characteristics that shaped these moments: its founding in 1845 upon proslavery partisanship, as well as its current sexual abuse scandal. I argue that the Nullification Crisis of 1828-1834 and the cult of domesticity greatly influenced SBC policy and culture at its origins. Additionally, I examine the …

Technical Evaluation Of Floating Offshore Wind Plants And Installation Operations, Cengizhan Cengiz

Masters Theses

Offshore wind energy is witnessing remarkable growth, driven by the global shift towards sustainable and renewable energy sources. A pivotal innovation in this domain is floating offshore wind technology, which represents a transformative opportunity in harnessing wind energy from deep waters, where conventional fixed-bottom offshore wind systems face limitations due to depth constraints and escalating costs. In light of regional commitments to lower carbon emissions in energy generation, the accessibility of deep-water zones, rich in offshore wind resources, becomes increasingly critical. Despite the promising prospects, the floating offshore wind turbine (FOWT) developments present intricate challenges encompassing design, installation, and operational …

Effects Of Polymer-Nanoparticle Interactions On The Dynamics Of Attractive Polyhedral Oligomeric Silsesquioxane Nanocomposites, Walter W. Young

Doctoral Dissertations

Polyhedral oligomeric silsesquioxane (POSS) had long been recognized as a critical building block for inorganic-organic hybrid materials with unique and desirable properties and performance. Through synthesis and characterization of polymer/POSS nanocomposites, direct insights into the significant effects of the polymer/POSS interactions on the resulting material properties are obtained. Random copolymers of a hydrogen-bond accepting monomer and a non-interacting monomer are synthesized and loaded with a model amine-functionalized hydrogen bond donating POSS molecule via solution casting, to create a material with well-controlled dynamical heterogeneity. The increase in the glass transition temperature (Tg) of these materials is found to strongly depend on …

Multi-Scale Simulations Of Dynamic Protein Structures And Interactions, Yumeng Zhang

Doctoral Dissertations

Intrinsically disordered proteins (IDPs) are functional proteins that lack stable tertiary structures in the unbound state. They frequently remain dynamic even within specific complexes and assemblies. IDPs are major components of cellular regulatory networks and have been associated with cancers, diabetes, neurodegenerative diseases, and other human diseases. Computer simulations are essential for deriving a molecular description of the disordered protein ensembles and dynamic interactions for mechanistic understanding of IDPs in biology, diseases, and therapeutics. However, accurate simulation of the heterogeneous ensembles and dynamic interactions of IDPs is extremely challenging because of both the prohibitive computational cost and demanding force field …

An Efficient Privacy-Preserving Framework For Video Analytics, Tian Zhou

Doctoral Dissertations

With the proliferation of video content from surveillance cameras, social media, and live streaming services, the need for efficient video analytics has grown immensely. In recent years, machine learning based computer vision algorithms have shown great success in various video analytic tasks. Specifically, neural network models have dominated in visual tasks such as image and video classification, object recognition, object detection, and object tracking. However, compared with classic computer vision algorithms, machine learning based methods are usually much more compute-intensive. Powerful servers are required by many state-of-the-art machine learning models. With the development of cloud computing infrastructures, people are able …

Harnessing Nanocellulose For Sustainable Carbon Capture: Synthesis, Processing, And Performance Evaluation, Jerred C. Wassgren

Doctoral Dissertations

Scientists and governments have recognized the need for environmental remediation, most notably with the adoption of the Paris Agreement in 2016. One of the major concerns is the production of greenhouse gases (GHGs). The major GHG is carbon dioxide (CO₂) in which humans emit over 36 gigatons yearly. Atmospheric CO₂ is responsible for 60% of the heat retained by the earth – resulting in rising temperatures, melting ice caps, and increasing ocean acidification. Therefore, a major goal of the Paris Agreement was to reduce GHG emissions as well as the capture of CO₂ from the atmosphere. …

Lay It On The Line: The Life And Music Of Gladys Bentley, Bianki Torres, J.

Doctoral Dissertations

This work is a historical biography of Gladys Bentley and her blues music. She was a cross-dressing entertainer from the Harlem Renaissance and performed popular songs with added, sometimes improvised sexual innuendo. This study considers the performances of her recorded and written material as trans music, meaning, that black music provided a platform to determine racial, gendered, and sexual cultural expressions changing over time, however, always rooted in black vernacular culture. Using showbills, promotional material, studio recordings and short autobiography, this study follows Bentley’s career as “male impersonator” and the effects lesbian/gay (queer) culture had on her blues. Also, I …

Automated Identification And Mapping Of Interesting Mineral Spectra In Crism Images, Arun M. Saranathan

Doctoral Dissertations

The Compact Reconnaissance Imaging Spectrometer for Mars (CRISM) has proven to be an invaluable tool for the mineralogical analysis of the Martian surface. It has been crucial in identifying and mapping the spatial extents of various minerals. Primarily, the identification and mapping of these mineral spectral-shapes have been performed manually. Given the size of the CRISM image dataset, manual analysis of the full dataset would be arduous/infeasible. This dissertation attempts to address this issue by describing an (machine learning based) automated processing pipeline for CRISM data that can be used to identify and map the unique mineral signatures present in …

Local Governmental Collective Action And Mandated Policy Implementation, Michael D. Roberts

Doctoral Dissertations

Groundwater depletion is a global concern. Around the world, groundwater supplies more than half the water used for agriculture and human drinking. Many other species and ecosystems are supported by groundwater and rely on the integrity of groundwater and surface water connections. Like many social and environmental problems, addressing the overextraction of groundwater requires collective action across governmental authorities and jurisdictions. To date, there are few examples of successful, voluntary groundwater management. To steer collective action at the local level, higher levels of government often use policy mandates. This dissertation examines the implementation of one such mandate. California’s Sustainable Groundwater …

Examining Social Capital And Its Role In Special Education Leadership, April K. Rist

Doctoral Dissertations

The purpose of this mixed-methods study was to analyze the relationships that existed between the special education leaders and other members of a district leadership team in order to measure their access to social capital. Quantitative data were collected using surveys of one school district’s leadership team and social network analysis (SNA) was used to visually analyze the connections between members of the team. Qualitative data were subsequently collected via semi-structured interviews of each of the 19 members of the leadership team. What types of ties do the special education administrators have to fellow administrators within district leadership teams? What …

Data To Science With Ai And Human-In-The-Loop, Gustavo Perez Sarabia

Doctoral Dissertations

AI has the potential to accelerate scientific discovery by enabling scientists to analyze vast datasets more efficiently than traditional methods. For example, this thesis considers the detection of star clusters in high-resolution images of galaxies taken from space telescopes, as well as studying bird migration from RADAR images. In these applications, the goal is to make measurements to answer scientific questions, such as how the star formation rate is affected by mass, or how the phenology of bird migration is influenced by climate change. However, current computer vision systems are far from perfect for conducting these measurements directly. They may …

The Evolution And Development Of Awns In The Grass Subfamily Pooideae, Erin L. Patterson

Doctoral Dissertations

This research focuses on a specific example of replicated evolution: the grass awn. Awns are typically extensions of the lemma, but may also appear on glumes or paleas. The lemma is a leaf-like organ on the exterior of the grass flower, the glumes are a pair of bracts subtending the basic unit of grass inflorescences, the spikelet, and the palea is the floral organ opposite the lemma. Awns are often described as "hair-" or "bristle-" like, but appear in many different shapes. Many awns are “twisted & geniculate", in which the awn has two sections, a lower twisted column, and …

Drivers’ Hazard Avoidance During Vehicle Automation: Impact Of Mental Models And Implications For Training, Ganesh Pai Mangalore

Doctoral Dissertations

Advanced Driver Assistance Systems (ADAS) are vehicle automation systems that have become more accessible and prevalent in vehicles in recent years. But the introduction of such technologies introduces new human factors challenges. Past literature suggests that users of vehicle automation lack the necessary and appropriate knowledge about their automation system. This may play a negative role in their hazard avoidance abilities when driving with automation features. Improving mental models and knowledge could generally lead to safer interactions with vehicle automation systems, but any effort to develop hazard avoidance skills when driving with vehicle automation is impeded by the lack of …

Policy Gradient Methods: Analysis, Misconceptions, And Improvements, Christopher P. Nota

Doctoral Dissertations

Policy gradient methods are a class of reinforcement learning algorithms that optimize a parametric policy by maximizing an objective function that directly measures the performance of the policy. Despite being used in many high-profile applications of reinforcement learning, the conventional use of policy gradient methods in practice deviates from existing theory. This thesis presents a comprehensive mathematical analysis of policy gradient methods, uncovering misconceptions and suggesting novel solutions to improve their performance. We first demonstrate that the update rule used by most policy gradient methods does not correspond to the gradient of any objective function due to the way the …

Framing Fanart, E J. Nielsen

Doctoral Dissertations

My dissertation, “Framing Fanart,” broadly theorizes media fanart, a form of transformative work that is enormously popular, transnational and transcultural, and at its heart an engaged response to a piece of media. Through physical and digital archival research, discourse analysis, and qualitative research methods, I consider specific examples of how fanart functions within these different framings. This work is some of the first to consider fanart broadly as both a lens through which to view patterns of cultural production and a discrete artefact which merits serious consideration as artwork in its own right.

Multi-Slam Systems For Fault-Tolerant Simultaneous Localization And Mapping, Samer Nashed

Doctoral Dissertations

Mobile robots need accurate, high fidelity models of their operating environments in order to complete their tasks safely and efficiently. Generating these models is most often done via Simultaneous Localization and Mapping (SLAM), a paradigm where the robot alternatively estimates the most up-to-date model of the environment and its position relative to this model as it acquires new information from its sensors over time. Because robots operate in many different environments with different compute, memory, sensing, and form constraints, the nature and quality of information available to individual instances of different SLAM systems varies substantially. `One-size-fits-all' solutions are thus exceedingly …

Incorporating Machine Learning With Satellite Data To Support Critical Infrastructure Measurement And Sustainable Development, Aggrey Muhebwa

Doctoral Dissertations

Under the umbrella concept of Artificial Intelligence (AI) for good, recent advances in machine learning and large-scale data analysis have opened new opportunities to solve humanity’s most pressing challenges. Improvements in computation complexity and advances in AI (e.g., Vision Transformers) have led to faster and more effective techniques for extracting high-dimensional patterns from large-scale heterogeneous datasets (big data). Further, as satellite data become increasingly available at varying temporal-spatial resolutions, AI tools are helping us to better understand the underlying causes of environmental and socioeconomic changes at an unprecedented scale, ushering in an era of data-driven decision-making to support sustainable and …

Investigating The Escape Mechanism Of Sre Bearing Mrna Transcripts During Viral Host Shutoff, Daniel Macveigh-Fierro

Doctoral Dissertations

During viral infection, the virus and host clash for control over gene expression in an evolutionarily arms race that has raged for thousands of years. During lytic replication, Kaposi’s sarcoma associated herpesvirus (KSHV) triggers a massive RNA decay event known as host shut off. This causes over 70% of all RNA to be degraded suppressing the host antiviral response while freeing resources for viral replication. Our lab focuses on a subset of transcripts that escape from this viral degradation event using a cis acting 3’ UTR element known as a “SOX resistant element” or SRE. Although we have identified a …

Quantum Chaos, Integrability, And Hydrodynamics In Nonequilibrium Quantum Matter, Javier Lopez Piqueres

Doctoral Dissertations

It is well-known that the Hilbert space of a quantum many-body system grows exponentially with the number of particles in the system. Drive the system out of equilibrium so that the degrees of freedom are now dynamic and the result is an extremely complicated problem. With that comes a vast landscape of new physics, which we are just recently starting to explore. In this proposal, we study the dynam- ics of two paradigmatic classes of quantum many-body systems: quantum chaotic and integrable systems. We leverage certain tools commonly employed in equilibrium many-body physics, as well as others tailored to the …