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Applications Of And Algorithms For Genome Assembly And Genomic Analyses With An Emphasis On Marine Teleosts, Brandon D. Pickett May 2021

Applications Of And Algorithms For Genome Assembly And Genomic Analyses With An Emphasis On Marine Teleosts, Brandon D. Pickett

Theses and Dissertations

The burgeoning frequency of genome sequencing in recent years is a testament to both the improvements in sequencing technologies and the utility of genomic analyses for biological discovery. The rapid proliferation in technological advancements and availability of complementary data types and techniques has obfuscated the optimal process of genome assembly and raised the barrier to entry to unprecedented levels. In this dissertation, we describe the genome assemblies performed for several marine teleosts and discuss the algorithms and applications required for genome assembly, including some of our specific contributions to the genome assembly and annotation space. In Chapter 1 and Chapter …


Taxonomy And Applied Biogeography Of Mongolian Stoneflies (Insecta: Plecoptera), Sarah Walker Judson Mar 2010

Taxonomy And Applied Biogeography Of Mongolian Stoneflies (Insecta: Plecoptera), Sarah Walker Judson

Theses and Dissertations

Since the early 1900s, efforts have been made to catalogue the stoneflies of Mongolia. Taxonomic work from 1960 to 1980 greatly expanded basic lists of stoneflies in Mongolia, but no comprehensive survey or synthesis of this dispersed literature has been completed. In conjunction with a modern survey of the aquatic insects of Mongolia, we collected Plecoptera on a series of expeditions to the Selenge (north) and Altai (west) regions of Mongolia. A total of 48 species distributed in 24 genera and 8 families were documented, including 3 of the 5 Mongolian endemics, 2 new species records for Mongolia, and 1 …


A Taxonomic And Ecologic Study Of The Riverbottom Forest On St. Mary River, Lee Creek And Belly River In Southwest Alberta, Canada, Robert Keith Shaw Aug 1974

A Taxonomic And Ecologic Study Of The Riverbottom Forest On St. Mary River, Lee Creek And Belly River In Southwest Alberta, Canada, Robert Keith Shaw

Theses and Dissertations

The riverbottom forest community of St. Mary River, Lee Creek and Belly River in southwest Alberta, Canada is a unique ecological entity characterized by poplar species having their major Alberta distribution along these streams. Stands in the community are dominated by three tree species, six shrub species and nine herb species. Establishment of the community is dependent on climate and substrate; destruction is the result of progressive lateral stream-flow erosion. Soils are sandy loams above gravel, with pH values of 7.7 to 8.0 and soluble salt concentration of 176 to 458 parts per million. Trees in mature stands averaged 23.0 …