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Interdisciplinary Perspectives On The Development, Integration, And Application Of Cognitive Ontologies, Janna Hastings, Gwen A. Frishkoff, Barry Smith, Mark Jensen, Russell A. Poldrack, Jane Lomax, Anita Bandrowski, Fahim Imam, Jessica Turner, Maryann E. Martone
Interdisciplinary Perspectives On The Development, Integration, And Application Of Cognitive Ontologies, Janna Hastings, Gwen A. Frishkoff, Barry Smith, Mark Jensen, Russell A. Poldrack, Jane Lomax, Anita Bandrowski, Fahim Imam, Jessica Turner, Maryann E. Martone
Neuroscience Institute Faculty Publications
We discuss recent progress in the development of cognitive ontologies and summarize three challenges in the coordinated development and application of these resources. Challenge 1 is to adopt a standardized definition for cognitive processes. We describe three possibilities and recommend one that is consistent with the standard view in cognitive and biomedical sciences. Challenge 2 is harmonization. Gaps and conflicts in representation must be resolved so that these resources can be combined for mark-up and interpretation of multi-modal data. Finally, Challenge 3 is to test the utility of these resources for large- scale annotation of data, search and query, and …
Neuroanatomical Domain Of The Foundational Model Of Anatomy Ontology, B Nolan Nichols, Jose Lv Mejino, Landon T. Detwiler, Trond T. Nilsen, Maryann E. Martone, Jessica Turner, Daniel L. Rubin, James F. Brinkley
Neuroanatomical Domain Of The Foundational Model Of Anatomy Ontology, B Nolan Nichols, Jose Lv Mejino, Landon T. Detwiler, Trond T. Nilsen, Maryann E. Martone, Jessica Turner, Daniel L. Rubin, James F. Brinkley
Neuroscience Institute Faculty Publications
Background: The diverse set of human brain structure and function analysis methods represents a difficult challenge for reconciling multiple views of neuroanatomical organization. While different views of organization are expected and valid, no widely adopted approach exists to harmonize different brain labeling protocols and terminologies. Our approach uses the natural organizing framework provided by anatomical structure to correlate terminologies commonly used in neuroimaging. Description: The Foundational Model of Anatomy (FMA) Ontology provides a semantic framework for representing the anatomical entities and relationships that constitute the phenotypic organization of the human body. In this paper we describe recent enhancements to the …