Digital Commons Network^™

Of Hosts And Habitats: The Ecological And Evolutionary Patterns Of The Amphibian Skin Microbiome, Benjamin Houston Holt

Doctoral Dissertations

The skin microbiome of amphibian hosts can inhibit growth of pathogenic fungi, contribute to anti-predator compounds in newts, and is linked with sex-specific scents in frogs. However, despite growing evidence of symbiont importance to amphibians, how symbionts are acquired and maintained on hosts remains poorly resolved. Microbiomes exist on a dynamic spectrum from casual assemblages to intricate systems, and community members vary in fidelity and association to hosts. The establishment of these communities involves complex interactions between symbionts, host traits, and source communities. I seek to enhance our understanding by assessing the spatial-temporal patterns of the salamander skin microbiome relative …

Population Ecology Of The Diamondback Terrapin At Their Northern Range Limit, Patricia M. Levasseur

Doctoral Dissertations

This dissertation research focuses on the population ecology of the northern diamondback terrapin (Malaclemys terrapin terrapin) in Wellfleet Bay, MA. The northern diamondback terrapin is a Massachusetts-threatened turtle species restricted to estuarine environments. With a range from Cape Hatteras, North Carolina to Massachusetts, Cape Cod Bay is the northernmost part of the subspecies range. Mass Audubon’s Wellfleet Bay Wildlife Sanctuary has been using capture-mark-recapture (CMR) methods since 1980 marking over 3,000 individuals; however, low detection rates and variable search effort have resulted in unreliable population estimates not suitable for informing conservation practices within the bay. Low sample sizes, …

Distribution, Ecological Niche, Movement, And Home Range Of The Sickle Darter (Percina Williamsi) In The Upper Tennessee River Basin., Kyler Hecke

Doctoral Dissertations

The Sickle Darter (Percina williamsi) is a rare and imperiled species that is endemic to the upper Tennessee River basin. Over the last ~50 years it has declined across much of its range, and as a result it has been petitioned for federal listing under the Endangered species Act. This species has been relatively understudied, and important questions remain to be addressed: 1.) What is the current distribution of the Sickle darter and how has it varied spatiotemporally? 2.) What is the ecological niche of the Sickle Darter? and 3.) What is the movement capability of the Sickle …

The Effects Of Urbanization On The Avian Gut Microbiome, Mae Berlow

Doctoral Dissertations

The gut microbiome influences and is influenced by the host, and can affect the host organism by contributing to health, development and immunity. Similarly, the host can influence this community; it’s makeup can vary with host species, locality, diet, social stressors, and environmental stressors. Some of these environmental stressors have arisen due to human-induced rapid environmental change, like urbanization. The physiology and behaviors of organisms that are able to persist in urban environments are often different from their non-urban congeners. Nutrition, development, and immunity—all of which are affected by the gut microbiome—are important factors that can determine survival in urban …

Ecology And Conservation Of Immature Sea Turtles Across Multiple Scales, Lucas Griffin

Doctoral Dissertations

Considering many sea turtle populations are a fraction of their historic size and anthropogenic threats within the marine environment are increasing, additional data are imperative to help mitigate anthropogenic disturbances and to build resilience into sea turtle populations. In this dissertation, I present three data chapters focused on immature sea turtle ecology and conservation. These chapters evaluate sea turtle ecology and conservation at varying scales, ranging from mitigating human-wildlife interactions at the individual level, to coastal movements and space use at the ecosystem level, and to large scale climate change impacts at the population level. Ultimately, these chapters provide a …

Predicting Pelargonium Responses To Climate Change In A Biodiversity Hotspot Throughout South Africa, Tanisha Marie Williams

Doctoral Dissertations

Climate change is causing major shifts in species distributions, which fundamentally alters the species composition and functioning of biological communities across the globe. Projections suggest that by 2100 up to one of every six species will become extinct. Such drastic changes will have significant impacts on biodiversity patterns and ecosystem functioning. Ecologists are faced with the pressing work of trying to understand how plants will respond to changing and increasingly stressful environments. To predict the long-term effects and magnitude of species responses, it is imperative that species adaptive responses are understood across the entirety of their geographic ranges. My dissertation …

Impacts And Management Of Foliar Pathogens Of Eastern White Pine (Pinus Strobus) In The Northeastern United States, Cameron Ducayet Mcintire

Doctoral Dissertations

White Pine Needle Damage (WPND) is a complex of foliar fungal pathogens currently impacting forests in the Northeastern US. Since ca. 2009, chlorosis and defoliation caused by WPND has been observed in stands of eastern white pine (Pinus strobus L) throughout the region. A changing climate, notably warmer temperatures and higher than average spring precipitation in the region are thought to be exacerbating the establishment and spread of these native pathogens. The goals of this research are to enhance the understanding of the timing and magnitude of WPND-induced defoliations across infected stands, assess the physiological response of trees affected by …

Rhetorical Investments: Writing, Technology, And The Emerging Logics Of The Public Sphere, Dan Ehrenfeld

Doctoral Dissertations

This dissertation lays the groundwork for writing pedagogies that meaningfully engage students in the "writing public" (Yancey) of the 21st century. Through the development of an "infrastructural" model of the public sphere, I argue that rhetoricians and compositionists can correct an overreliance upon two archetypes of public engagement—the deliberative "conversation" and the embodied, activist "counterpublic"—that have failed to attune us to the distinct forms of relationality that characterize our changing public sphere. Drawing upon public sphere theory, ecological models of rhetorical circulation, and Mikhail Bakhtin's concept of the chronotope, I develop a model of rhetorical investment that helps us better …

Patterns Of Trait And Range Size Variation In An Evolutionary Radiation: The Role Of Environmental Gradients, Timothy Eoin Moore

Doctoral Dissertations

Current threats to biodiversity are driving a research focus on understanding how environmental changes influence patterns of biodiversity at global and continental scales, deemphasizing research done at regional scales. I examined the role of environmental gradients in driving diversity patterns in the Greater Cape Floristic Region (GCFR) of South Africa, a biodiversity hotspot, renowned for its floristic diversity and high endemism levels.

The plant genus Pelargonium is centered in the winter-rainfall region of the GCFR, and varies considerably in morphology and growth form: remarkably, leaf size varies over 15000-fold across species. Pelargonium comprises 6 well-supported subclades that have diversified within …

Ecophysiology And Taxonomy Of Saccharina Latissima Forma Angustissima (Laminariales, Phaeophyceae) From The Gulf Of Maine, Usa, Simona Augyte

Doctoral Dissertations

The overarching theme of this doctoral dissertation was to resolve the taxonomic status of an endemic narrow-bladed kelp, Saccharina latissima forma angustissima (Laminariales, Phaeophyceae), which has a very restricted distribution of 8 nautical miles in the Gulf of Maine, USA. Since the kelp only grows on ledges and islands exposed to high ocean swells, it was unknown if phenotypic plasticity alone was driving its morphology or if the kelp was a distinct genotype (a population with heritable traits). I incorporated lab and fieldwork to discriminate genetic divergence of this kelp, investigated temperature and light requirements of the gametophytic and juvenile …

Microbial Community And Vibrio Parahaemolyticus Population Dynamics In Relayed Oysters, Michael Anthony Taylor

Doctoral Dissertations

The CDC estimates that 45,000 people are sickened each year by foodborne Vibrio parahaemolyticus in the United States. Filter-feeding bivalve shellfish, such as oysters, are routinely inhabited by human pathogenic V. parahaemolyticus and there currently is not a contaminant management process that effectively reduces concentrations of V. parahaemolyticus in oysters. The transplanting of V. parahaemolyticus -laden oysters to an area with low concentrations or no V. parahaemolyticus, called oyster relay, is one reduction strategy that holds promise for treating live oysters. A key consideration for effective strategies to reduce Vibrio spp. in shellfish is the influence of microbiota in natural …

Effects Of Agricultural Practices On Soil Communities And Their Associated Ecosystem Services, Lesley W. Atwood

Doctoral Dissertations

To maximize crop yields, commodity crop production systems typically rely on inputs of fertilizers, pesticides, and irrigation; simplification of crop rotations (e.g., monocultures); and strategic use of soil disturbance (e.g., tillage, cultivation, etc.). While these practices are intended to optimize the soil conditions for crop development and reduce spatial and temporal variability in crop yield, they also impact soil biological diversity and the important agroecosystem services soil communities provide. Identification of management practices that are less prone to causing undesirable changes in the soil food web community are central to improving the sustainability of our agricultural systems. In this dissertation, …

Patterns And Drivers Of Carbon Fluxes In Temperate Forests, Andrew Ouimette

Doctoral Dissertations

Despite decades of carbon cycling research in terrestrial ecosystems, a complex suite of biotic and abiotic interactions make a complete understanding of the natural carbon cycle elusive. This thesis aims to advance our understanding of the carbon cycle, and stems from several ongoing projects aimed at quantifying carbon dynamics in forest ecosystems across a range of scales, with a specific effort to include both above and belowground components of forest ecosystems. I begin with a project using detailed chemical measurements on specific segments of root systems from two different tree species, in order to help refine methods that quantify the …

Nitrogen Dynamics And Retention In The River Network Of A Tropical Forest, Luquillo Mountains, Puerto Rico, Richard Brereton

Doctoral Dissertations

This dissertation identifies gaps in the scientific understanding of nutrient cycling, particularly nitrogen (N) cycling, in streams and riparian zones of tropical montane forests, and addresses several of those gaps with original field-based research using study watersheds in the Luquillo Mountains of Puerto Rico as the model system. The Luquillo Mountains have features typical of mature montane tropical forests, such as high background N concentrations in streams and groundwater relative to streams in other biomes. As a USDA Forest Service Experimental Forest, the Luquillo Mountains are accessible to researchers and have abundant monitoring and experimental datasets from which to build …

Population And Trophic Dynamics Of Striped Bass And Blueback Herring In The Connecticut River, Justin P. Davis

Doctoral Dissertations

Case studies of the ramifications of predator management for prey population dynamics can play a valuable role in developing ecosystem fisheries management. My dissertation focuses on the predator-prey interaction between Striped Bass (Morone saxatilis), an abundant predatory finfish, and an imperiled prey population of anadromous Blueback Herring (Alosa aestivalis). Annual returns of Blueback Herring to the Holyoke Dam on the Connecticut River in southern New England collapsed during the 1980-2000s, coincident with Striped Bass recovery. I studied the abundance and demography of both species in the Connecticut River during 2005-08, measured predation levels, and surveyed the …

Individual Variation In Plant Traits Drives Species Interactions, Ecosystem Functioning, And Responses To Global Change, Quentin Daniel Read

Doctoral Dissertations

Ecologists have long sought to understand the processes that lead to the riotous diversity in communities of organisms that inhabit disparate climates and landscapes. Such a diversity of traits leads to a diversity of interactions among species in natural communities, which in turn generates a diversity of potential responses to ongoing global change. In this dissertation, I do three things: I explore the forces that structure plant communities and the ecosystem functions that they mediate, I describe patterns of variation among communities, species, and individual organisms across environmental contexts, and I disentangle the direct effects of global change from the …

Channeled Whelk (Busycotypus Canaliculatus) Ecology In Relation To The Fishery In Vineyard And Nantucket Sounds, Massachusetts, Shelley Ann Edmundson

Doctoral Dissertations

Channeled whelks (Busycotypus canaliculatus) are predatory marine gastropods that support lucrative commercial fisheries along the east coast of the United States, with areas around Massachusetts supplying the largest landings. In the absence of a more thorough and comprehensive understanding of channeled whelk biology, it is unclear how to sustainably manage their fisheries. Within this dissertation, various aspects of whelk ecology were investigated to determine how to protect this species, while effectively managing the local fishery.

Early life history experiments revealed channeled whelk egg strings may incubate for 8 to 9 months in MA water temperatures. Incubation period decreased with increasing …

Metabolizing Capital: Writing, Information, And The Biophysical World, Christian J. Pulver

Doctoral Dissertations

While the discipline of rhetoric and composition has looked at a variety of topics related to the materiality of writing, the majority of materialist approaches limit their scope to local, situated writing practices. However, with the spread of digital media and the establishment of a global, networked infrastructure for communication and inscription, the abundant textuality that has emerged in the early 21^st century demands that we develop more rigorous materialist approaches to the study and teaching of writing. This growing textual environment has been called, in popular and academic discourse, Web 2.0—a more “social Web” than its early …

Biodiversity Dynamics Of Forest Birds In Fragmented Landscapes: A Multidimensional Approach For Ecology And Conservation, Brian T. Klingbeil

Doctoral Dissertations

Anthropogenic modification of landscapes continues to be one of the greatest threats to biodiversity. As human populations grow and demands for natural resources and land increase, landscapes will experience intensified alteration and fragmentation, with potentially dramatic consequences for biodiversity. Consequently, development of appropriate conservation policies requires effective monitoring programs as well as an understanding of how communities are affected by human-modified landscapes. To address this, I explored how multiple dimensions of temperate forest bird biodiversity (taxonomic, functional, and phylogenetic) respond to human-modified landscapes by investigating the relative importance of habitat area, habitat configuration, and matrix heterogeneity. I evaluated relationships between …

Hybrid Zone Dynamics Between Saltmarsh (Ammodramus Caudacutus) And Nelson's (Ammodramus Nelsoni) Sparrows, Jennifer Walsh

Doctoral Dissertations

Hybrid zones in nature have long been equated to “windows on the evolutionary process” providing unique environments to understand patterns of gene flow and introgression and the role of these mechanisms in maintaining biodiversity. Ongoing hybridization and introgression can lead to a number of conservation and evolutionary outcomes; as such, identifying the role of introgression in natural populations can provide new insights into species interactions while contributing to our understanding of evolutionary theory.

The research presented below characterizes hybrid zone dynamics between two tidal marsh endemics – the Saltmarsh (Ammodramus caudacutus) and Nelson’s (Ammodramus nelsoni) sparrow. Both species co-inhabit salt …

Turning Up The Heat On The Little Things That Run The World: Evaluating The Impacts Of Climate Change On Ant Biodiversity In The Temperate Forest Communities Of The Northeastern United States, Israel Del Toro

Doctoral Dissertations

Climatic change threatens biodiversity worldwide. In the forests of the northeastern United States, climate change is expected to increase mean annual temperatures by up to 4.5˚C and change precipitation seasonality. These changes in climate are likely to have impacts on the biodiversity of the region. In order to better understand the impacts of climate change on biodiversity, I used ants, an indicator taxonomic group, to predict how ant communities and ant-mediated ecosystem processes change as the climate warms. In the first chapter of this dissertation, I review the major ecosystem processes and services mediated by ants using the Millennium Ecosystem …

Interpreting, Stephanie Jo Kent

Doctoral Dissertations

What do community interpreting for the Deaf in western societies, conference interpreting for the European Parliament, and language brokering in international management have in common? Academic research and professional training have historically emphasized the linguistic and cognitive challenges of interpreting, neglecting or ignoring the social aspects that structure communication. All forms of interpreting are inherently social; they involve relationships among at least three people and two languages. The contexts explored here, American Sign Language/English interpreting and spoken language interpreting within the European Parliament, show that simultaneous interpreting involves attitudes, norms and values about intercultural communication that overemphasize information and discount …

Causes And Consequences Of Diversity Within Experimental Biofilms Of Pseudomonas Aeruginosa, Kenneth Mark Flynn

Doctoral Dissertations

Currently, we do not understand how much biodiversity may be maintained in any environment, especially not in the structured environments of biofilms, which constitute the dominant mode of microbial life. Although maintenance is associated with the complex spatial structure of biofilm architecture and resulting ecological opportunities, how both the abiotic and biotic environment defines available niches remains poorly understood. Here, we experimentally evolved three replicate populations founded by Pseudomonas aeruginosa strain PA14 for 540 generations under conditions favoring a regular cycle of biofilm formation and dispersal. Utilizing a variety of laboratory and genomic sequencing approaches, we characterize the population genetic …

Full-Waveform And Discrete-Return Lidar In Salt Marsh Environments: An Assessment Of Biophysical Parameters, Vertical Uncertatinty, And Nonparametric Dem Correction, Jeffrey Nickerson Rogers

Doctoral Dissertations

High-resolution and high-accuracy elevation data sets of coastal salt marsh environments are necessary to support restoration and other management initiatives, such as adaptation to sea level rise. Lidar (light detection and ranging) data may serve this need by enabling efficient acquisition of detailed elevation data from an airborne platform. However, previous research has revealed that lidar data tend to have lower vertical accuracy (i.e., greater uncertainty) in salt marshes than in other environments. The increase in vertical uncertainty in lidar data of salt marshes can be attributed primarily to low, dense-growing salt marsh vegetation. Unfortunately, this increased vertical uncertainty often …

Genetic And Ecological Characterization Of Indigoidine Production By Phaeobacter Sp. Strain Y4i, William Nathan Cude

Doctoral Dissertations

The Roseobacter clade is a widely distributed, abundant, and biogeochemically active lineage of marine alpha-proteobacteria. Members of the Roseobacter lineage are prolific surface colonizers in marine coastal environments, and antimicrobial secondary metabolite production has been hypothesized to provide a competitive advantage in colonization. In this work, Phaeobacter sp. strain Y4I was found to produce the water soluble, blue pigment indigoidine via a nonribosomal peptide synthase-based biosynthetic pathway encoded by a novel series of genetically linked genes, termed igiBCDFE. Comparison of wildtype, non-pigmented, and hyper-pigmented Y4I insertional mutants demonstrated a perfect correlation between indigoidine production and the inhibition of Vibrio …

Inorganic Carbon And Nitrogen Utilization In Mixotrophic Ciliates, Donald M. Schoener

Doctoral Dissertations

Mixotrophy is a common nutritional strategy that uses both heterotrophy and photosynthesis. Kleptoplastidic mixotrophs do not make their own plastids but acquire them from their algal prey. Before we can add mixotrophs to standard ecological models we need to understand how much each nutritional mode contributes to mixotrophic growth, and how this balance may be influenced by plastid acquisition, retention, and turnover.

In order to examine the role of captured chloroplasts in the metabolism of the oligotrich ciliate Strombidium rassoulzadegani. I evaluated the uptake and retention of chloroplasts, the ability of two different algae to supply functional chloroplasts, and …

Modeling The Genetic Consequences Of Mutualism On Communities, Carrie E. Eaton

Doctoral Dissertations

Three models of coevolutionary dynamics between mutualistically interacting species are developed. The first is a three loci, haploid model describing a general plant-pollinator system, such as Greya moth and its host plant. In this case, the system will always collapse to a single plant type and pollinator type. In a community with an mutant plant type, it is possible for a host-switch to occur, governed by the initial relative abundance plant type and the pollinator choosiness. In addition, genetic diversity can be maintained if the pollinator has no differential host preference, only adaptation to a host. Next, this model is …

Mechanisms Of Nutrient Limitation And Nutrient Acquisition In Managed And Unmanaged Forest Ecosystems, Matthew A. Vadeboncoeur

Doctoral Dissertations

Understanding the interactions between global change, human and natural disturbances, and other factors on biogeochemical processes in forests is necessary to ensure the sustainability of forest management. Here I report the results of several investigations into nutrient acquisition processes in the forests of New Hampshire. I begin with a meta-analysis of fertilization studies showing that phosphorus (P) and calcium (Ca) as well as nitrogen (N) may limit primary production in deciduous forests of the region. Because these limiting nutrients are all removed from the ecosystem when trees are harvested, I compared nutrient budgets under a range of harvesting scenarios with …

The Effects Of Biotic And Abiotic Factors On Byssogenesis, Growth And Movement Patterns Of The Blue Mussel, Mytilus Edulis, Yvette Louise Garner

Doctoral Dissertations

Blue mussels create extensive aggregations on intertidal and low subtidal shores in the Gulf of Maine, in which they modify habitat, trap sediments and create microclimates for many organisms. Mussels are an important aquaculture species worldwide, and play a major part of the economy of New England. Blue mussels produce collagenous byssal threads to anchor themselves to the substrate on wave swept shores. Byssogenesis, growth and movement abilities of mussels are influenced by a host of biotic and abiotic factors. In this dissertation I quantified byssogenesis and growth of the blue mussel, Mytilus edulis, affected by wave exposure, temperature, and …

Diversity And Activity Of Roseobacters And Roseophage, Charles Ryan Budinoff

Doctoral Dissertations

Bacteria of the Roseobacter lineage are dominant bacterioplankton in coastal systems and contribute significantly to secondary production in oceanic environments. Generalities of Roseobacter ecology, diversity, and distributions are known, but the intraspecific differences between species and their dynamics over short temporal periods is not well understood. Bacteriophage that infect Roseobacters (‘roseophage’) have the potential to shunt secondary production into the dissolved carbon pool and through the process of infection alter Roseobacter physiology. Despite their significance, little effort was made prior to the onset of this study to characterize roseophage. Using culture dependent and independent approaches, I describe the diversity and …