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Social-Ecological Vulnerability To Environmental Extremes And Adaptation Pathways In Small-Scale Fisheries Of The Southern California Current, Juan Camilo Cardenas, Et. Al.

Economics Department Faculty Publications Series

Coastal ecosystems and human communities are threatened worldwide by climate change, and shocks from social, market and political change. There is an urgent global need to promote resilient food production and livelihoods in the face of these shocks. Small-scale fisheries (SSF) in rural settings can be particularly vulnerable as they frequently lack the resources, rights and infrastructure to respond to shocks originating outside the focal systems. We examined ecological and social outcomes of environmental extremes in a SSF socio-ecological system (SES) by using long-term oceanographic (between 2010-2019) and ecological (2006-2018) data tracking change in a kelp forest ecosystem of Baja …

Learning To See With Minimal Human Supervision, Zezhou Cheng

Doctoral Dissertations

Deep learning has significantly advanced computer vision in the past decade, paving the way for practical applications such as facial recognition and autonomous driving. However, current techniques depend heavily on human supervision, limiting their broader deployment. This dissertation tackles this problem by introducing algorithms and theories to minimize human supervision in three key areas: data, annotations, and neural network architectures, in the context of various visual understanding tasks such as object detection, image restoration, and 3D generation. First, we present self-supervised learning algorithms to handle in-the-wild images and videos that traditionally require time-consuming manual curation and labeling. We demonstrate that …

Landscape Ecology And Conservation Of Freshwater Turtles Across The Eastern United States, H. Patrick Roberts

Doctoral Dissertations

Space use and movement patterns are integral to population dynamics and are often indicative of vulnerability to anthropogenic threats. Spatial ecology research can be fundamental to conservation strategies but is largely biased toward short-term intra- and interannual patterns. Without an understanding of space use over temporal scales commensurate with lifespan and the processes that may influence movement, conservation tools derived from short-term (2–4 yrs) movement patterns may be misguided or ineffective, particularly for long-lived species. The goal of Chapter 1 was to characterize the long-term (multi-decadal) spatial ecology of three long-lived (80–110 yrs) turtle species. We revisited six areas where …

Evaluation Of Acoustic Telemetry Array Performance And Fine- Scale And Broad-Scale Spatial Movement Patterns For Coral Reef Species In Culebra, Puerto Rico, Roxann Cormier

Masters Theses

Acoustic telemetry is an important tool when studying the spatial ecology of marine animals. First, it is important to identify the challenges of using this tool in shallow tropical marine environments before tracking marine animals. One significant issue that can influence the effectiveness of acoustic telemetry is the efficiency or detectability of acoustic signals by receivers. Understanding factors influencing detection efficiency of acoustic tags is especially important for fine-scale positioning systems (such as the VEMCO positioning system, VPS) that use detections in an overlapping receiver network to calculate geographic positions of tagged fish. I modelled the efficiency of an acoustic …

Habitat Use And Individual-Based Modeling Of Bald Eagles In Maine Near Current And Potential Wind Energy Facilities, Blake Massey

Doctoral Dissertations

Wind energy facilitates have expanded significantly in the United States over the last few decades due to technological advancements, regulatory incentives, and policies aimed at increasing renewable energy production, but poorly sited turbines may have adverse effects on local and migratory birds, bats, and other wildlife and their habitats. In the northeastern United States, Maine has become the leader in wind energy but also has the greatest density of Bald Eagles in the region. As wind energy production continues to be developed across the state and in coastal waters, research is needed to analyze and assess potential risks, including displacement, …

Monitoring Mammals At Multiple Scales: Case Studies From Carnivore Communities, Kadambari Devarajan

Doctoral Dissertations

Carnivores are distributed widely and threatened by habitat loss, poaching, climate change, and disease. They are considered integral to ecosystem function through their direct and indirect interactions with species at different trophic levels. Given the importance of carnivores, it is of high conservation priority to understand the processes driving carnivore assemblages in different systems. It is thus essential to determine the abiotic and biotic drivers of carnivore community composition at different spatial scales and address the following questions: (i) What factors influence carnivore community composition and diversity? (ii) How do the factors influencing carnivore communities vary across spatial and temporal …

Examining The Co-Infection Effects Of Helminths And Malaria In An Indonesian Community, Andrea Rodríguez-Sánchez

Masters Theses

Malaria is one of the most prevalent vector-borne infectious diseases with major morbidity and mortality in sub-Saharan Africa and Southeast Asia. Recent epidemiological studies have shown that co-occurrence of soil-transmitted helminth (STH) infections, or infection caused by parasitic worms, are associated with increased risk of malaria infection. However, studies of the association between STH and malaria, and the effect of antihelminth (deworming) treatments that are more commonly used in areas with high STH infection rates, are sparse. Therefore, we explored the relationship between STH and malaria infection in an Indonesian community (N=1997) with high prevalence of both STH and malaria …

Trait Variation And Long-Term Population Dynamics Of The Invasive Alliaria Petiolata (Garlic Mustard) Across Three Microhabitats In Its Invaded Range, Laura Hancock

Masters Theses

Long-term population dynamics across heterogeneous environments can be a major factor in determining species’ ability to expand their ranges and persist in novel environments. Whether and how the relative performance of populations in different microsites over time impacts invasion into new microsites is poorly understood. Though largely restricted to disturbed semi-shaded microhabitats in its home range, the invasive herb Alliaria petiolata (garlic mustard) successfully invades intact forest understories – a novel microhabitat – in its introduced range, where it is known to impact above and below ground community composition. To test the hypothesis that source-sink metapopulation dynamics may be promoting …

Perilous Choices: Landscapes Of Fear For Adult Birds Reduces Nestling Condition Across An Urban Gradient, Aaron M. Grade, Susannah B. Lerman, Paige S. Warren

Environmental Conservation Faculty Publication Series

Predator fear effects influence reproductive outcomes in many species. In non-urban systems, passerines often respond to predator cues by reducing parental investment, resulting in smaller and lighter nestlings. Since trophic interactions in urban areas are highly altered, it is unclear how passerines respond to fear effects in human-altered landscapes. Nestlings of passerines in urban areas also tend to be smaller and lighter than their rural counterparts and are often exposed to high densities of potential predators yet experience lower per capita predation-the predation paradox. We suggest fear effects in urban habitats could be a significant mechanism influencing nestling condition in …

Large-Scale Patterns Of Green Turtle Trophic Ecology In The Eastern Pacific Oceans, Jeffery A. Seminoff, Lisa M. Komoroske, Diego Amorocho, Randall Arauz, Didiher Chacón-Chaverrí, Nelly De Paz, Peter H. Dutton, Miguel Donoso, Maike Heidemeyer, Gabriel Hoeffer

Environmental Conservation Faculty Publication Series

Trophic position and niche width are fundamental components of a species' ecology, reflecting resource use, and influencing key demographic parameters such as somatic growth, maturation, and survival. Concepts about a species' trophic niche space have important implications for local management and habitat protection, and can shed light about resilience to changing climate for species occurring over broad spatial scales. For elusive marine animals such as sea turtles, trophic niche is challenging to study, and researchers often rely on other metrics, such as isotopic niche, as a proxy. Here, stable isotope analysis (delta C-13 and delta N-15 values) was conducted on …

Species And Population Specific Gene Expression In Blood Transcriptomes Of Marine Turtles, Shreya M. Banerjee, Jamie Adkins Stoll, Camryn D. Allen, Jennifer M. Lynch, Heather S. Harris, Lauren Kenyon, Richard E. Connon, Eleanor J. Sterling, Eugenia Naro-Maciel, Kathryn Mcfadden

Environmental Conservation Faculty Publication Series

Background: Transcriptomic data has demonstrated utility to advance the study of physiological diversity and organisms' responses to environmental stressors. However, a lack of genomic resources and challenges associated with collecting high-quality RNA can limit its application for many wild populations. Minimally invasive blood sampling combined with de novo transcriptomic approaches has great potential to alleviate these barriers. Here, we advance these goals for marine turtles by generating high quality de novo blood transcriptome assemblies to characterize functional diversity and compare global transcriptional profiles between tissues, species, and foraging aggregations.ResultsWe generated high quality blood transcriptome assemblies for hawksbill (Eretmochelys imbricata), loggerhead …

Does Invasion Science Encompass The Invaded Range? A Comparison Of The Geographies Of Invasion Science Versus Management In The U.S., Lara Munro

Masters Theses

Biases in invasion science lead to a taxonomic focus on plants, particularly a subset of well-studied plants, and a geographic focus on invasions in Europe and North America. Geographic biases could also cause some branches of invasion science to focus on a subset of environmental conditions in the invaded range, potentially leading to an incomplete understanding of the ecology and management of plant invasions. While broader, country-level geographic biases are well known, it is unclear whether these biases extend to a finer scale and thus affect research within the invaded range. This study assessed whether research sites for ten well-studied …

Fear, Parental Behavior, And Community Structure In Residential Lands, Aaron M. Grade

Doctoral Dissertations

In an urbanizing world, residential lands present an opportunity for conservation of biodiversity right in our backyards. Informed conservation necessitates a mechanistic understanding of how development influences animal populations and communities. Birds nesting in residential lands are less productive in urban yards than rural yards. Urban yards also have higher densities of potential predators, but lower per capita predation, indicating that direct predation is not entirely responsible for lack of productivity. I suggest that fear effects, also known as non-lethal effects, could be a mechanism by which predators exert indirect influence on bird parental behavior and nestling condition in urban …

Sunset Park, Brooklyn: Reclaiming An Urban Industrial Area And Creating Community, Yincheng Zhang

Landscape Architecture & Regional Planning Masters Projects

Like many metropolises around the world, urban renewal in New York dominates the process

of urban development due to the scarcity of urban land resources and the ever-expanding population of New York. In the history of New York’s urban expansion, with the continuous expansion of the city’s outer edge and industrial relocation, industrial land originally on the edge of the city is gradually surrounded by residential areas.

The large area of vacant land and building also limits the further development of the region.

How to reuse the existing infrastructure and brownfield with the highly degraded environment is

particularly important for …

Learning With Aggregate Data, Tao Sun

Doctoral Dissertations

Various real-world applications involve directly dealing with aggregate data. In this work, we study Learning with Aggregate Data from several perspectives and try to address their combinatorial challenges. At first, we study the problem of learning in Collective Graphical Models (CGMs), where only noisy aggregate observations are available. Inference in CGMs is NP- hard and we proposed an approximate inference algorithm. By solving the inference problems, we are empowered to build large-scale bird migration models, and models for human mobility under the differential privacy setting. Secondly, we consider problems given bags of instances and bag-level aggregate supervisions. Specifically, we study …

“Movers And Stayers” Movement Ecology Of Yellowtail Snapper Ocyurus Chrysurus And Horse-Eye Jack Caranx Latus Around Buck Island Reef National Monument, U.S. Virgin Islands, Ashleigh Novak

Masters Theses

When movement ecology of target species is coupled with spatial management approaches, such as marine protected areas (MPAs), the results can establish effective conservation outcomes. Nevertheless, a knowledge gap persists regarding how many marine organisms use specific environments over long, continuous periods of time. Acoustic telemetry arrays and fine-scale positioning systems are quickly pervading the marine environment as they can monitor animal movements on a near continuous basis, filling in many previous unknowns on spatial use patterns. Further, coupling fine-scale movement patterns and benthic habitat data provides a spatial framework foundation essential to understanding the intricacies of how habitats can …

After Post-Development: On Capitalism, Difference, And Representation, Kiran Asher, Joel Wainwright

Women, Gender, Sexuality Studies Faculty Publication Series

The post‐development school associated with the thought of Arturo Escobar treats development as a discursive invention of the West, best countered by ethnographic attention to local knowledge of people marginalised by colonial modernity. This approach promises paths to more equitable and sustainable alternatives to development. Post‐development has been criticised vigorously in the past. But despite its conceptual and political shortcomings, it remains the most popular critical approach to development and is reemerging in decolonial and pluriversal guises. This paper contends that the post‐development critique of mainstream development has run its course and deserves a fresh round of criticism. We argue …

Identify Adolescent Opioid Users And Provide Brief Multi-Contact Counseling: A Pilot Quality Improvement Project Guided By Prochaska’S Behavioral Change Model, Stephen Zombil

Doctor of Nursing Practice (DNP) Projects

Background and Review of Literature: The epidemic of opioid use/dependence is consuming many lives and destroying many families across the length and breadth of the United States and the world. Public health authorities, States, and local governments as well as the public have expressed, with growing alarm, an unprecedented rise in morbidity and mortality related to drug addiction and substance abuse. Despite the prevention efforts, drug addiction and substance abuse continue to be a major issue that needs multifaceted public health approaches to solve it. Purpose: The purpose of this pilot quality improvement project was to encourage behavioral …

Progress And Challenges Of Protecting North American Ash Trees From The Emerald Ash Borer Using Biological Control, Jian J. Duan, Leah S. Bauer, Roy G. Vandriesche, Juli R. Gould

Environmental Conservation Faculty Publication Series

After emerald ash borer (EAB), Agrilus planipennis Fairmaire, was discovered in the United States, a classical biological control program was initiated against this destructive pest of ash trees (Fraxinus spp.). This biocontrol program began in 2007 after federal regulatory agencies and the state of Michigan approved release of three EAB parasitoid species from China: Tetrastichus planipennisi Yang (Eulophidae), Spathius agrili Yang (Braconidae), and Oobius agrili Zhang and Huang (Encyrtidae). A fourth EAB parasitoid, Spathius galinae Belokobylskij (Braconidae) from Russia, was approved for release in 2015. We review the rationale and ecological premises of the EAB biocontrol program, and then report …

The Effects Of Anthropogenic Stress On Nitrogen-Cycling Microbial Communities In Temperate And Tropical Soils, George S. Hamaoui Jr.

Doctoral Dissertations

In this dissertation several research studies are discussed that characterize the effects of anthropogenic, or human-induced, stress on both ammonia-oxidizing and total bacterial soil microbial communities. The disturbances of land-use change in tropical, South American rainforests and artificial warming and nitrogen (N) fertilization in temperate, North American forests were investigated as these disturbances represent past and current disturbances caused by human landscape alteration and climate change. Initially, the response of soil ammonia-oxidizing microbial communities to land-use change from primary rainforest to pasture and, finally, back to secondary forest was determined. Next, these analyses of land-use change effects were expanded to …

Assessing The Economic And Flow Regime Outcomes Of Alternative Hydropower Operations On The Connecticut River's Mainstem, Luke Detwiler

Environmental & Water Resources Engineering Masters Projects

Hydropower provides a source of reliable and inexpensive energy, producing approximately 20% of the global energy supply, though it comes at a cost to riverine ecosystems. To maximize revenues, major hydropower facilities store and release water with respect to short-term changes in energy price, causing significant sub-daily flow regime alterations that impact downstream ecological communities. In the United States, the Federal Energy Regulatory Commission (FERC) is responsible for hydropower regulation and this is administered, in part, during periodic relicensing of existing facilities. The process of relicensing provides the opportunity to evaluate the goals and concerns of interested parties and evaluate …

Gdgt Distribution In A Stratified Lake And Implications For The Application Of Tex86 In Paleoenvironmental Reconstructions, Zhaohui Zhang, Rienk Smittenberg, Raymond S. Bradley

Geosciences Department Faculty Publication Series

We investigated the relationship between distributions of GDGTs, GDGT-based proxies and environmental factors in a stratified lake in northwestern Norway. More than 90% of isoGDGTs were produced at the bottom of the oxycline, indicating a predominance of ammonia-oxidizing Group I.1a of Thaumarchaeota, supported by high crenarchaeol/caldarchaeol ratios. Dissolved oxygen content, rather than temperature, exercised a primary control on TEX₈₆ values. In spite of low BIT value in surface sediment, the reconstructed lake surface temperature was “cold” biased. MBT values in streams and lake surface water were significantly smaller than those in the catchment soil, suggesting in situ production of …

The Influence Of Sex And Season On Conspecific Spatial Overlap In A Large, Actively-Foraging Colubrid Snake, Javan M. Bauder, David R. Breininger, M. Rebecca Bolt, Michael L. Legare, Christopher L. Jenkins, Betsie B. Rothermel, Kevin Mcgarigal

Environmental Conservation Faculty Publication Series

Understanding the factors influencing the degree of spatial overlap among conspecifics is important for understanding multiple ecological processes. Compared to terrestrial carnivores, relatively little is known about the factors influencing conspecific spatial overlap in snakes, although across snake taxa there appears to be substantial variation in conspecific spatial overlap. In this study, we described conspecific spatial overlap of eastern indigo snakes (Drymarchon couperi) in peninsular Florida and examined how conspecific spatial overlap varied by sex and season (breeding season vs. non-breeding season). We calculated multiple indices of spatial overlap using 6- and 3-month utilization distributions (UD) of dyads …

Florivory Shapes Both Leaf And Floral Interactions, Nicole L. Soper Gorden, Lynn S. Adler

Biology Department Faculty Publication Series

Florivory, or the consumption of flowers, is a ubiquitous interaction that can reduce plant reproduction directly by damaging reproductive tissues and indirectly by deterring pollinators. However, we know surprisingly little about how florivory alters plant traits or the larger community of species interactions. Although leaf damage is known to affect floral traits and interactions in many systems, the consequences of floral damage for leaf traits and interactions are unknown. We manipulated floral damage in Impatiens capensisand measured effects on floral attractive traits and secondary chemicals, leaf secondary chemicals, floral interactions, leaf herbivory, and plant reproduction. We also examined relationships …

Illegal Hunting On The Masoala Peninsula Of Madagascar: Its Extent, Causes, And Impact On Lemurs And Humans, Cortni Borgerson

Doctoral Dissertations

Two of the greatest challenges we face in the world today are: (1) reducing human poverty and malnutrition; and (2) slowing the loss of global biodiversity. Madagascar ranks nearly last in global food security, and is one of the most biodiverse countries in the world. Within Madagascar, the Masoala Peninsula is one of our greatest conservation priorities. I use one year (July 2011 – June 2012) of lemur surveys, habitat sampling, direct observations of forest mammal hunting, eleven months of daily 24-hour recall surveys, and interviews of all households in one focal village on the Masoala peninsula of Madagascar to …

Predicted 25-Hydroxyvitamin D Score And Risk Of Multiple Sclerosis In U.S. Women, Alexandra Purdue-Smithe

Masters Theses

Multiple sclerosis (MS) is a progressive, autoimmune neurodegenerative disorder affecting nearly 350,000 people in the United States and resulting in significant disability. As an immunomodulator, vitamin D may play a role in the development of MS. Previous studies have observed an inverse association of 25-hydroxyvitamin D (25(OH)D) levels and MS risk in younger populations; however, whether this relationship persists in older adults remains unclear. We prospectively investigated the association between predicted 25(OH)D level and incident MS in the Nurses’ Health Study (NHS) (n=121,701) and NHS II (n=116,430). 25(OH)D levels were predicted using validated regression models that include important determinants of …

Session E9: Function Control Of Fish Migration Facilities At The Hydro Power Plant Kostheim At River Main, Dr. Jörg Schneider

International Conference on Engineering and Ecohydrology for Fish Passage

Abstract:

Applying various conventional and modern monitoring methods a function control of downstream migration facilities and turbine passage related mortality was conducted at the Kostheim Hydro Plant (4,9 MW; two Kaplan turbines; Δh max. 3,74 m, at MQ 2,36 m) at the river Main (km 3,2). Furthermore, the perceptibility and passability of a nature-like bypass for upstream migration was examined. Results showed a size selectivity of the bypass caused by an unsuitable entrance position 40 m downstream of the outlet of the turbines. The effectiveness of the downstream migration facilities proved to be low, leading to high mortalities at the …

Session A7: Use Of Telemetry For Fish Ecological Survey In Europe, Beate Adam

International Conference on Engineering and Ecohydrology for Fish Passage

Abstract:

In contrast to the US, Canada, and Scandinavian Countries there are few and infrequent ecological studies on fish conducted in Europe which use telemetry systems such as hydro-acoustic, radio, or PIT technology. The reason for the infrequent use of these technologies is mostly the high cost of the equipment and lack of experienced staff to operate it. Within the framework of this introductory talk there will be an exemplary selection of recently conducted telemetry studies in Europe that demonstrate the application possibilities of these technologies and resultant findings. Due to the amended European Animal Welfare Act (2014) there exist …

Movements And Conservation Of The Migratory White-Eared Kob (Kobus Kob Leucotis) In South Sudan, Malik D. Marjan

Doctoral Dissertations

The annual movements of white-eared kob (Kobus kob leucotis), tiang (Damaliscus korrigum tiang), in eastern South Sudan was investigated to provided appropriate information for developing effective conservation actions for the migratory kob. Although kob is the focus of the study tiang has been included as the two migrations are ecologically linked and overlap at least in the wet season. During the 20 years of the civil war which ravaged South Sudan, the kob and tiang populations were thought to be severely hunted for food by both the combatants and local people to the extent that their …

Integrated Modeling Of Land Use And Climate Change Impacts On Multiscale Ecosystems Of Central African Watersheds, Simon Nampindo

Doctoral Dissertations

Assessment and management of ecosystem services demands diverse knowledge of the system components. Land use change occurring mainly through deforestation, expansion of agriculture and unregulated extraction of natural resources are the greatest challenges of the Congo basin and yet is central to supporting over 100 million people. This study undertook to implement an integrated modeling of multiscale ecosystems of central African watersheds and model the impact of anthropogenic factors on elephant population in Greater Virunga landscape. The study was conducted at varied scales, regional, landscape, and community. Regional study included watershed analysis and hydrological assessment using remotely sensed data implemented …