Digital Commons Network^™

Model-Based Deep Autoencoders For Clustering Single-Cell Rna Sequencing Data With Side Information, Xiang Lin

Dissertations

Clustering analysis has been conducted extensively in single-cell RNA sequencing (scRNA-seq) studies. scRNA-seq can profile tens of thousands of genes' activities within a single cell. Thousands or tens of thousands of cells can be captured simultaneously in a typical scRNA-seq experiment. Biologists would like to cluster these cells for exploring and elucidating cell types or subtypes. Numerous methods have been designed for clustering scRNA-seq data. Yet, single-cell technologies develop so fast in the past few years that those existing methods do not catch up with these rapid changes and fail to fully fulfil their potential. For instance, besides profiling transcription …

A Neural Analysis-Synthesis Approach To Learning Procedural Audio Models, Danzel Serrano

Theses

The effective sound design of environmental sounds is crucial to demonstrating an immersive experience. Classical Procedural Audio (PA) models have been developed to give the sound designer a fast way to synthesize a specific class of environmental sounds in a physically accurate and computationally efficient manner. These models are controllable due to the choice of parameters from analyzing a class of sound. However, the resulting synthesis lacks the fidelity for the preferred immersive experience; thus, the sound designer would rather search through an extensive database for real recordings of a target sound class. This thesis proposes the Procedural audio Variational …

Artificial Neural Networks And Their Applications To Intelligent Fault Diagnosis Of Power Transmission Lines, Fatemeh Mohammadi Shakiba

Dissertations

Over the past thirty years, the idea of computing based on models inspired by human brains and biological neural networks emerged. Artificial neural networks play an important role in the field of machine learning and hold the key to the success of performing many intelligent tasks by machines. They are used in various applications such as pattern recognition, data classification, stock market prediction, aerospace, weather forecasting, control systems, intelligent automation, robotics, and healthcare. Their architectures generally consist of an input layer, multiple hidden layers, and one output layer. They can be implemented on software or hardware. Nowadays, various structures with …

Adversarially Robust And Accurate Machine Learning For Image Classification, Yanan Yang

Dissertations

Machine learning techniques in medical imaging systems are accurate, but minor perturbations in the data known as adversarial attacks can fool them. These attacks make the systems vulnerable to fraud and deception, and thus a significant challenge has been posed in practice. This dissertation presents the gradient-free trained sign activation networks to detect and deter adversarial attacks on medical imaging AI (Artificial Intelligence) systems. Experimental results show a higher distortion value is required to attack the proposed model than other state-of-the-art models on brain MRI (Magnetic resonance imaging), Chest X-ray, and histopathology image datasets. Moreover, the proposed models outperform the …

Private And Federated Deep Learning: System, Theory, And Applications For Social Good, Han Hu

Dissertations

During the past decade, drug abuse continues to accelerate towards becoming the most severe public health problem in the United States. The ability to detect drug­abuse risk behavior at a population scale, such as among the population of Twitter users, can help to monitor the trend of drug­abuse incidents. However, traditional methods do not effectively detect drug­abuse risk behavior in tweets, mainly due to the sparsity of such tweets and the noisy nature of tweets. In the first part of this dissertation work, the task of classifying tweets as containing drug­abuse risk behavior or not, is studied. Millions of public …

Electro-Chemo-Mechanics Of The Interfaces In 2d-3d Heterostructure Electrodes, Vidushi Sharma

Dissertations

Unique heterostructure electrodes comprising two-dimensional (2D) materials and bulk three dimensional (3D) high-performance active electrodes are recently synthesized and experimentally tested for their electrochemical performance in metal-ion batteries. Such electrodes exhibit long cycle life while they also retain high-capacity inherent to the active electrode. The role of 2D material is to provide a supportive mesh that allows buffer space for volume expansions upon ion intercalation in the active material and establishes a continuous electronic contact. Therefore, the binding strength between both materials is crucial for the success of such electrodes. Furthermore, battery cycles may bring about phase transformations in the …

Machine Learning And Computer Vision In Solar Physics, Haodi Jiang

Dissertations

In the recent decades, the difficult task of understanding and predicting violent solar eruptions and their terrestrial impacts has become a strategic national priority, as it affects the life of human beings, including communication, transportation, the power grid, national defense, space travel, and more. This dissertation explores new machine learning and computer vision techniques to tackle this difficult task. Specifically, the dissertation addresses four interrelated problems in solar physics: magnetic flux tracking, fibril tracing, Stokes inversion and vector magnetogram generation.

First, the dissertation presents a new deep learning method, named SolarUnet, to identify and track solar magnetic flux elements in …

Gradient Free Sign Activation Zero One Loss Neural Networks For Adversarially Robust Classification, Yunzhe Xue

Dissertations

The zero-one loss function is less sensitive to outliers than convex surrogate losses such as hinge and cross-entropy. However, as a non-convex function, it has a large number of local minima, andits undifferentiable attribute makes it impossible to use backpropagation, a method widely used in training current state-of-the-art neural networks. When zero-one loss is applied to deep neural networks, the entire training process becomes challenging. On the other hand, a massive non-unique solution probably also brings different decision boundaries when optimizing zero-one loss, making it possible to fight against transferable adversarial examples, which is a common weakness in deep learning …

Towards Adversarial Robustness With 01 Lossmodels, And Novel Convolutional Neural Netsystems For Ultrasound Images, Meiyan Xie

Dissertations

This dissertation investigates adversarial robustness with 01 loss models and a novel convolutional neural net systems for vascular ultrasound images.

In the first part, the dissertation presents stochastic coordinate descent for 01 loss and its sensitivity to adversarial attacks. The study here suggests that 01 loss may be more resilient to adversarial attacks than the hinge loss and further work is required.

In the second part, this dissertation proposes sign activation network with a novel gradient-free stochastic coordinate descent algorithm and its ensembling model. The study here finds that the ensembling model gives a high minimum distortion (as measured by …

Advances In Deep Learning With Applications To Computer Vision And Astronomy, Zhihang Hu

Dissertations

Deep Learning has spanned a variety of applications in computer vision as well as computational astronomy. These two aspects obtained similar data structure, therefore, their solutions can be transferable between each other. This dissertation look into two video-related tasks in computer vision and propose a novel problem in computational astronomy.

Specifically, acquiring an in-depth understanding of videos has been a cornerstone problem in computer vision. This problem has been studied by various researchers from different perspectives, among which video prediction has attracted much attention. Video prediction aims to generate the pixels of future frames given a sequence of context frames. …

Development Of Deep Learning Neural Network For Ecological And Medical Images, Shaobo Liu

Dissertations

Deep learning in computer vision and image processing has attracted attentions from various fields including ecology and medical image. Ecologists are interested in finding an effective model structure to classify different species. Tradition deep learning model use a convolutional neural network, such as LeNet, AlexNet, VGG models, residual neural network, and inception models, are first used on classifying bee wing and butterfly datasets. However, insufficient data sample and unbalanced samples in each class have caused a poor accuracy. To make improvement the test accuracy, data augmentation and transfer learning are applied. Recently developed deep learning framework based on mathematical morphology …

Deep Learning On Image Forensics And Anti-Forensics, Zhangyi Shen

Dissertations

Image forensics protect the authenticity and integrity of digital images. On the contrary, as the countermeasures of digital forensics, anti-forensics is applied to expose the vulnerability of forensics tools. Consequently, forensics researchers could develop forensics tools against possible new attacks. This dissertation investigation demonstrates two image forensics methods based on convolutional neural network (CNN) and two image anti-forensics methods based on generative adversarial network (GAN).

Detecting unsharp masking (USM) sharpened image is the first study in this dissertation. A CNN architecture comprises four convolutional layers and a classification module is proposed to discriminate sharpened images and unsharpened images. The results …

Stock Market Prediction Using Investor Sentiment, Sarvesh Shukla

Theses

Stock market prediction has attracted not only business but academia as well. It is a research topic, to which many computational methods have been proposed, but desirable and reliable performance is yet to be attained. This study proposes a new method for stock market prediction, which adopts the Gated Recurrent Unit a deep neural network and incorporates investor sentiment to improve its forecasting performance. By extracting investor sentiment from news headlines using VADER sentiment, this paper makes it possible to analyze the irrational component of stock price. Our empirical study on DJIA index proves that our prediction method provides 6% …

Land Cover Image Segmentation Based On Individual Class Binary Segmentation, Sathyanarayanan Somasunder

Theses

Remote sensing techniques have been developed over the past decades to acquire data without being in contact of the target object or data source. Their application on land-cover image segmentation has attracted significant attention in recent years. With the help of satellites, scientists and researchers can collect and store high resolution image data that can be further processed, segmented, and classified. However, these research results have not yet been synthesized to provide coherent guidance on the effect of variant land-cover segmentation processes. In this paper, we present a novel model that augments segmentation using smaller networks to segment individual classes. …

Short Term Temperature Forecasting Using Lstms, And Cnn, Darshan Shah

Theses

Weather forecasting is a vital application in present times. We can use the predictions to minimize the weather related loss. Use of machine learning and deep learning algorithms for forecasting, can eliminate or reduce the necessity of big data and high computation dependent process of parameterization. Long Short-Term Memory (LSTM) is a widely used deep learning architecture for time series forecasting. In this paper, we aim to predict one day ahead average temperature using a 2-layer neural network consisting of one layer of LSTM and one layer of 1D convolution. The input is pre-processed using a smoothing technique and output …

Rm-Net: Rasterizing Markov Signals To Images For Deep Learning, Kajal Gupta

Theses

Statistical machine learning approaches are quite famous for processing Markov signal data. They can model unobserved states and learn certain characteristics particular to a signal with good accuracy. However, with the advent of Deep learning the novice ways of solving a problem has shifted towards this more sophisticated algorithm, which is much better, powerful and more accurate. Specifically, Convolutional Neural Nets (CNN) have shown many promising results on images and videos. Here we illustrate how CNN can be applied to a 1D numeric signal using signal rasterization technique. We start by rasterizing a 1D numeric Markov signal into an image …

A Deep Machine Learning Approach For Predicting Freeway Work Zone Delay Using Big Data, Abdullah Shabarek

Dissertations

The introduction of deep learning and big data analytics may significantly elevate the performance of traffic speed prediction. Work zones become one of the most critical factors causing congestion impact, which reduces the mobility as well as traffic safety. A comprehensive literature review on existing work zone delay prediction models (i.e., parametric, simulation and non-parametric models) is conducted in this research. The research shows the limitations of each model. Moreover, most previous modeling approaches did not consider user delay for connected freeways when predicting traffic speed under work zone conditions. This research proposes Deep Artificial Neural Network (Deep ANN) and …

Human Activity Recognition Using Wearable Sensors: A Deep Learning Approach, Jialun Xue

Theses

In the past decades, Human Activity Recognition (HAR) grabbed considerable research attentions from a wide range of pattern recognition and human–computer interaction researchers due to its prominent applications such as smart home health care. The wealth of information requires efficient classification and analysis methods. Deep learning represents a promising technique for large-scale data analytics. There are various ways of using different sensors for human activity recognition in a smartly controlled environment. Among them, physical human activity recognition through wearable sensors provides valuable information about an individual’s degree of functional ability and lifestyle. There is abundant research that works upon real …

Deep Learning For Quantitative Motion Tracking Based On Optical Coherence Tomography, Peter Abdelmalak

Theses

Optical coherence tomography (OCT) is a cross-sectional imaging modality based on low coherence light interferometry. OCT has been widely used in diagnostic ophthalmology and has found applications in other biomedical fields such as cancer detection and surgical guidance.

In the Laboratory of Biophotonics Imaging and Sensing at New Jersey Institute of Technology, we developed a unique needle OCT imager based on a single fiber probe for breast cancer imaging. The needle OCT imager with sub-millimeter diameter can be inserted into tissue for minimally invasive in situ breast imaging. OCT imaging provides spatial resolution similar to histology and has the potential …

Early Detection Of Fake News On Social Media, Yang Liu

Dissertations

The ever-increasing popularity and convenience of social media enable the rapid widespread of fake news, which can cause a series of negative impacts both on individuals and society. Early detection of fake news is essential to minimize its social harm. Existing machine learning approaches are incapable of detecting a fake news story soon after it starts to spread, because they require certain amounts of data to reach decent effectiveness which take time to accumulate. To solve this problem, this research first analyzes and finds that, on social media, the user characteristics of fake news spreaders distribute significantly differently from those …

Applied Deep Learning In Intelligent Transportation Systems And Embedding Exploration, Xiaoyuan Liang

Dissertations

Deep learning techniques have achieved tremendous success in many real applications in recent years and show their great potential in many areas including transportation. Even though transportation becomes increasingly indispensable in people’s daily life, its related problems, such as traffic congestion and energy waste, have not been completely solved, yet some problems have become even more critical. This dissertation focuses on solving the following fundamental problems: (1) passenger demand prediction, (2) transportation mode detection, (3) traffic light control, in the transportation field using deep learning. The dissertation also extends the application of deep learning to an embedding system for visualization …

Model-Based Deep Autoencoders For Characterizing Discrete Data With Application To Genomic Data Analysis, Tian Tian

Dissertations

Deep learning techniques have achieved tremendous successes in a wide range of real applications in recent years. For dimension reduction, deep neural networks (DNNs) provide a natural choice to parameterize a non-linear transforming function that maps the original high dimensional data to a lower dimensional latent space. Autoencoder is a kind of DNNs used to learn efficient feature representation in an unsupervised manner. Deep autoencoder has been widely explored and applied to analysis of continuous data, while it is understudied for characterizing discrete data. This dissertation focuses on developing model-based deep autoencoders for modeling discrete data. A motivating example of …

High-Performance Learning Systems Using Low-Precision Nanoscale Devices, Nandakumar Sasidharan Rajalekshmi

Dissertations

Brain-inspired computation promises a paradigm shift in information processing, both in terms of its parallel processing architecture and the ability to learn to tackle problems deemed unsolvable by traditional algorithmic approaches. The computational capability of the human brain is believed to stem from an interconnected network of 100 billion compute nodes (neurons) that interact with each other through approximately 10¹⁵ adjustable memory junctions (synapses). The conductance of synapses is modifiable allowing the network to learn and perform various cognitive functions. Artificial neural networks inspired by this architecture have demonstrated even super-human performance in many complex tasks.

Computational systems based …

Statistical Machine Learning Methods For Mining Spatial And Temporal Data, Fei Tan

Dissertations

Spatial and temporal dependencies are ubiquitous properties of data in numerous domains. The popularity of spatial and temporal data mining has thus grown with the increasing prevalence of massive data. The presence of spatial and temporal attributes not only provides complementary useful perspectives, but also poses new challenges to the representation and integration into the learning procedure. In this dissertation, the involved spatial and temporal dependencies are explored with three genres: sample-wise, feature-wise, and target-wise. A family of novel methodologies is developed accordingly for the dependency representation in respective scenarios.

First, dependencies among discrete, continuous and repeated observations are studied …

Deep Morphological Neural Networks, Yucong Shen

Theses

Mathematical morphology is a theory and technique applied to collect features like geometric and topological structures in digital images. Determining suitable morphological operations and structuring elements for a give purpose is a cumbersome and time-consuming task. In this paper, morphological neural networks are proposed to address this problem. Serving as a non-linear feature extracting layers in deep learning frameworks, the efficiency of the proposed morphological layer is confirmed analytically and empirically. With a known target, a single-filter morphological layer learns the structuring element correctly, and an adaptive layer can automatically select appropriate morphological operations. For high level applications, the proposed …

Deep Learning Methods For Mining Genomic Sequence Patterns, Xin Gao

Dissertations

Nowadays, with the growing availability of large-scale genomic datasets and advanced computational techniques, more and more data-driven computational methods have been developed to analyze genomic data and help to solve incompletely understood biological problems. Among them, deep learning methods, have been proposed to automatically learn and recognize the functional activity of DNA sequences from genomics data. Techniques for efficient mining genomic sequence pattern will help to improve our understanding of gene regulation, and thus accelerate our progress toward using personal genomes in medicine.

This dissertation focuses on the development of deep learning methods for mining genomic sequences. First, we compare …

Computational Intelligence In Steganography: Adaptive Image Watermarking, Xin Zhong

Dissertations

Digital image watermarking, as an extension of traditional steganography, refers to the process of hiding certain messages into cover images. The transport image, called marked-image or stego-image, conveys the hidden messages while appears visibly similar to the cover-image. Therefore, image watermarking enables various applications such as copyright protection and covert communication. In a watermarking scheme, fidelity, capacity and robustness are considered as crucial factors, where fidelity measures the similarity between the cover- and marked-images, capacity measures the maximum amount of watermark that can be embedded, and robustness concerns the watermark extraction under attacks on the marked-image. Watermarking techniques are often …

Machine Learning Based Digital Image Forensics And Steganalysis, Guanshuo Xu

Dissertations

The security and trustworthiness of digital images have become crucial issues due to the simplicity of malicious processing. Therefore, the research on image steganalysis (determining if a given image has secret information hidden inside) and image forensics (determining the origin and authenticity of a given image and revealing the processing history the image has gone through) has become crucial to the digital society.

In this dissertation, the steganalysis and forensics of digital images are treated as pattern classification problems so as to make advanced machine learning (ML) methods applicable. Three topics are covered: (1) architectural design of convolutional neural networks …

Forensic Research On Detecting Seam Carving In Digital Images, Jingyu Ye

Dissertations

Digital images have been playing an important role in our daily life for the last several decades. Naturally, image editing technologies have been tremendously developed due to the increasing demands. As a result, digital images can be easily manipulated on a personal computer or even a cellphone for many purposes nowadays, so that the authenticity of digital images becomes an important issue. In this dissertation research, four machine learning based forensic methods are presented to detect one of the popular image editing techniques, called ‘seam carving’.

To reveal seam carving applied to uncompressed images from the perspective of energy distribution …

Viewability Prediction For Display Advertising, Chong Wang

Dissertations

As a massive industry, display advertising delivers advertisers’ marketing messages to attract customers through graphic banners on webpages. Display advertising is also the most essential revenue source of online publishers. Currently, advertisers are charged by user response or ad serving. However, recent studies show that users barely click or convert display ads. Moreover, about half of the ads are actually never seen by users. In this case, advertisers cannot enhance their brand awareness and increase return on investment. Publishers also lose much revenue. Therefore, the ad pricing standards are shifting to a new model: ad impressions are paid if they …