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Microbiome

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Microbiome Assembly And Function In The Solitary Mason Bee, Osmia Lignaria (Megachilidae), Bailey Crowley Aug 2024

Microbiome Assembly And Function In The Solitary Mason Bee, Osmia Lignaria (Megachilidae), Bailey Crowley

All Graduate Theses and Dissertations, Fall 2023 to Present

Animal-microbe interactions can influence host biology, ecology, and evolution. The assembly and function of microbes found within animal hosts oftentimes depends on which species are involved. Advances in sequencing technologies have permitted the exploration of host-microbe interactions in a variety of animals, including bees. Early research aimed at understanding the microbiomes of social bees, such as honey bees and bumble bees, found that microbes prevent the spoilage of stored pollen, breakdown indigestible nutrients into smaller molecules available for uptake by the host, and also protect the host from pathogens. When environmental stressors, such as increased temperatures, disrupt the microbiome, the …


Impact Of Plant Defenses And Aphid-Associated Microbes In Modulating Sorghum-Sugarcane Aphid Interactions, Edith Ikuze May 2024

Impact Of Plant Defenses And Aphid-Associated Microbes In Modulating Sorghum-Sugarcane Aphid Interactions, Edith Ikuze

Department of Entomology: Dissertations, Theses, and Student Research

Sorghum (Sorghum bicolor) is a vital cereal crop globally, facing challenges from invasive pests such as the sugarcane aphid (SCA; Melanaphis sacchari). To elucidate mechanisms of sorghum resistance to SCA, we examined the role of plant defenses and the influence of aphid-associated microbes in modulating sorghum defenses. Lignin is a complex heterogenous polymer present in nearly all plant cell walls that plays a critical role in protecting plants from various stresses. In this study, we investigated the role of the caffeoyl coenzyme-A O-methyltransferase (CCoAOMT), one of the core enzymes in monolignol biosynthesis pathway that leads to lignin …


Cultivating Excellence: A Literature Review On Harnessing The Power Of The Gut Microbiome For Athletic Performance, Maya Katharine Dean Apr 2024

Cultivating Excellence: A Literature Review On Harnessing The Power Of The Gut Microbiome For Athletic Performance, Maya Katharine Dean

Honors Projects

The interplay between our gut microbiome and health is immense. This literature review analyzes the current research assessing the interplay between gut microbiome and athletic performance. Knowing how to improve gut microbial diversity via nutrition and supplementation can take athletic performance to the next level; namely improvements in immune, mental, and physical health.


The Holobiont, Food Justice, And Gaia 2.0 A Post-Human(Ist) Approach To Functional Medicine, Rosalynn A. Vega Apr 2024

The Holobiont, Food Justice, And Gaia 2.0 A Post-Human(Ist) Approach To Functional Medicine, Rosalynn A. Vega

Anthropology Faculty Publications and Presentations

Functional medicine is a personalized and holistic approach to treating chronic disease. In this article, I build upon posthumanist literature by examing how functional medicine practitioners are decentering and destabilizing what it means to be human. Functional medicine discourse on the holobiont, which considers the human as an assemblage of different microbial species, reframes the “humananimal” (see Nayar 2018) as the “humicrobe.” I engage Gaia 2.0 (see Lenton and Latour 2018) when analyzing the interconnectivity, interdependence, and mutualism of all life. My approach to interconnectivity interweaves both functional medicine descriptions of systems biology and Luhmann’s (2012) approach to system’s theory …


Effects Of Probiotic Supplementation On Pcos Outcomes, Allison Stoeffler Apr 2024

Effects Of Probiotic Supplementation On Pcos Outcomes, Allison Stoeffler

Physician Assistant Scholarly Project Posters

Polycystic ovarian syndrome (PCOS) is a multifactorial metabolic, endocrinologic, and gynecologic condition affecting up to 5 million women in the United States. It is a disease characterized by oligo- or anovulation, hyperandrogenism, and/or polycystic ovaries. Phenotypic presentation can include irregular menstrual cycles, obesity, hirsutism, insulin resistance, or difficulty conceiving. If untreated, PCOS can result in a sequelae of chronic disease burden. Current standard of care consists of metformin for blood sugar control, oral contraceptives for menstrual regularity, and spironolactone for androgen imbalance, but newer research is identifying gut dysbiosis as a possible contributing etiology to disease development and symptomology. This …


The Impacts Of Environment And Host Evolutionary Relationships On Lemur Microbiota, Rachel B. Burten Mar 2024

The Impacts Of Environment And Host Evolutionary Relationships On Lemur Microbiota, Rachel B. Burten

Doctoral Dissertations

Recent studies have shown that the mammal microbiome is modified by environmental conditions, and that reduced microbiome functionality is associated with host health issues. Microbiome data in wild and captive primate populations can therefore be used to assess their health as they encounter a variety of environments. Comparative studies of the microbiome can also inform disease ecology, conservation, and captive management strategies tailored to different primate species. Therefore, this study examines how the hair, oral, and gut microbiota of nine wild and captive lemur species are determined by host phylogenetic relationships and host environment. I found that host species identity …


Metagenomic Analysis Unveils The Microbial Landscape Of Pancreatic Tumors, Sheema Khan, Goutam Banerjee, Saini Setua, Daleniece Jones, Anupam Dhasmana, Bhavin Chauhan, Pratik Banerjee, Murali M. Yallapu, Stephen Behrman, Subhash Chauhan Mar 2024

Metagenomic Analysis Unveils The Microbial Landscape Of Pancreatic Tumors, Sheema Khan, Goutam Banerjee, Saini Setua, Daleniece Jones, Anupam Dhasmana, Bhavin Chauhan, Pratik Banerjee, Murali M. Yallapu, Stephen Behrman, Subhash Chauhan

Research Symposium

Background: The composition of resident microbes in the human body is linked to various diseases and their treatment outcomes. Although studies have identified pancreatic ductal adenocarcinoma (PDAC) associated bacterial communities in the oral and gut samples, herein we hypothesize the prevalence of microbiota in pancreatic tumor tissues is different as compared to their matched adjacent, histologically normal appearing tissues and these microbial molecular signatures can be highly useful for PDAC diagnosis/prognosis.

Methods: In this study, we performed comparative profiling of bacterial populations in pancreatic tumors and their respective adjacent normal tissues using 16S rRNA-based metagenomics analysis.

Results: This study …


Association Of Blast Exposure In Military Breaching With Intestinal Permeability Blood Biomarkers Associated With Leaky Gut, Qingkun Liu, Zhaoyu Wang, Shengnan Sun, Jeffrey Nemes, Lisa A. Brenner, Miciej Skotak, Christina R. Lavalle, Yongchao Ge, Walter Carr, Fatemeh Haghighi Mar 2024

Association Of Blast Exposure In Military Breaching With Intestinal Permeability Blood Biomarkers Associated With Leaky Gut, Qingkun Liu, Zhaoyu Wang, Shengnan Sun, Jeffrey Nemes, Lisa A. Brenner, Miciej Skotak, Christina R. Lavalle, Yongchao Ge, Walter Carr, Fatemeh Haghighi

Faculty Publications

Injuries and subclinical effects from exposure to blasts are of significant concern in military operational settings, including tactical training, and are associated with self-reported concussion-like symptomology and physiological changes such as increased intestinal permeability (IP), which was investigated in this study. Time-series gene expression and IP biomarker data were generated from “breachers” exposed to controlled, low-level explosive blast during training. Samples from 30 male participants at pre-, post-, and follow-up blast exposure the next day were assayed via RNA-seq and ELISA. A battery of symptom data was also collected at each of these time points that acutely showed elevated symptom …


Integrative Genomic Insights Into Coral Resilience: Adaptive And Acclimatory Responses To Seasonal Environmental Shifts, Tasnim Ghanim Feb 2024

Integrative Genomic Insights Into Coral Resilience: Adaptive And Acclimatory Responses To Seasonal Environmental Shifts, Tasnim Ghanim

Theses and Dissertations

Coral reefs, critical to marine biodiversity and coastal protection, face escalating threats from climate change-related phenomena such as ocean warming. This warming is leading to widespread thermal stress that contributes to coral bleaching and infectious disease in corals, leading to the disruption of marine ecosystems and the economies that depend on them. Focusing on the brain coral Platygyra daedalea, known for its thermal resilience in the Persian Arabian Gulf—a region that exemplifies the extreme stressors of climate change—our study aims to dissect the genetic, transcriptomic, and microbiological underpinnings of coral survival in high-temperature environments predicted for the end of …


The Combined Role Of Microbes And Forages In Animal Productivity, K. Panke-Buisse Feb 2024

The Combined Role Of Microbes And Forages In Animal Productivity, K. Panke-Buisse

IGC Proceedings (1997-2023)

Agricultural systems, particularly ruminant systems, are underpinned by diverse, functional microbial communities—in the soil, forage, silo, and rumen. We have relied on the jobs they perform on our behalf, but only recently have we been able to look “under the hood” at the membership and mechanisms within these microbiomes and begin to think about optimization. Ensiling is a common method of forage preservation globally and represents a highly intensive intersection between forage and microbiology, which has been shown to have beneficial effects on forage quality and dairy animal performance. However, observations of enhanced productivity, especially in the context of inoculated …


Microbiome Preterm Birth Dream Challenge: Crowdsourcing Machine Learning Approaches To Advance Preterm Birth Research, Jonathan L. Golob, Tomiko T. Oskotsky, Alice S. Tang, Alennie Roldan, Verena Chung, Connie W.Y. Ha, Abigail Kuntzleman, Isaac Bigcraft, Stephen Techtmann, Et Al. Jan 2024

Microbiome Preterm Birth Dream Challenge: Crowdsourcing Machine Learning Approaches To Advance Preterm Birth Research, Jonathan L. Golob, Tomiko T. Oskotsky, Alice S. Tang, Alennie Roldan, Verena Chung, Connie W.Y. Ha, Abigail Kuntzleman, Isaac Bigcraft, Stephen Techtmann, Et Al.

Michigan Tech Publications, Part 2

Every year, 11% of infants are born preterm with significant health consequences, with the vaginal microbiome a risk factor for preterm birth. We crowdsource models to predict (1) preterm birth (PTB; <37 >weeks) or (2) early preterm birth (ePTB; <32 >weeks) from 9 vaginal microbiome studies representing 3,578 samples from 1,268 pregnant individuals, aggregated from public raw data via phylogenetic harmonization. The predictive models are validated on two independent unpublished datasets representing 331 samples from 148 pregnant individuals. The top-performing models (among 148 and 121 submissions from 318 teams) achieve area under the receiver operator characteristic (AUROC) curve scores of 0.69 and …


Microbiome Preterm Birth Dream Challenge: Crowdsourcing Machine Learning Approaches To Advance Preterm Birth Research, Jonathan L. Golob, Tomiko T. Oskotsky, Alice S. Tang, Alennie Roldan, Verena Chung, Connie W. Ha, Abigail Kuntzleman, Isaac Bigcraft, Et Al. Jan 2024

Microbiome Preterm Birth Dream Challenge: Crowdsourcing Machine Learning Approaches To Advance Preterm Birth Research, Jonathan L. Golob, Tomiko T. Oskotsky, Alice S. Tang, Alennie Roldan, Verena Chung, Connie W. Ha, Abigail Kuntzleman, Isaac Bigcraft, Et Al.

Michigan Tech Publications, Part 2

Every year, 11% of infants are born preterm with significant health consequences, with the vaginal microbiome a risk factor for preterm birth. We crowdsource models to predict (1) preterm birth (PTB < 37 weeks) or (2) early preterm birth (ePTB < 32 weeks) from 9 vaginal microbiome studies representing 3,578 samples from 1,268 pregnant individuals, aggregated from public raw data via phylogenetic harmonization. The predictive models are validated on two independent unpublished datasets representing 331 samples from 148 pregnant individuals. The top-performing models (among 148 and 121 submissions from 318 teams) achieve area under the receiver operator characteristic (AUROC) curve scores of 0.69 and 0.87 predicting PTB and ePTB, respectively. Alpha diversity, VALENCIA community state types, and composition are important features in the top-performing models, most of which are tree-based methods. This work is a model for translation of microbiome data into clinically relevant predictive models and to better understand preterm birth.


Modulation Of Diet-Induced Gut Inflammation In Slowing Initiation Of Hematologic Malignancies, Esther Nyarkoa Mensah Jan 2024

Modulation Of Diet-Induced Gut Inflammation In Slowing Initiation Of Hematologic Malignancies, Esther Nyarkoa Mensah

Theses, Dissertations and Capstones

The intestinal tract serves as a host to an extremely complex microbial system. Microbes in the gut regulate their metabolism in response to chemicals generated by other microorganisms as well as nutrition supply from dietary intake. Alterations in gut bacteria have been implicated in the development of metabolic disorders such as obesity and the progression of diseases such as Myelodysplastic syndromes (MDS). Although the cause of obesity is multifactorial, the consumption of high-fat or sugar-rich diets (Western diets) has been proposed as a significant contributor to this global epidemic. Obesity is a major public health concern that has been extensively …


Developing Regulated Crispr Systems To Control Bacterial Microbiomes, Gregory M. Pellegrino Dec 2023

Developing Regulated Crispr Systems To Control Bacterial Microbiomes, Gregory M. Pellegrino

Electronic Thesis and Dissertation Repository

Changes to the human microbiome’s composition and metabolome are associated with numerous diseases and alterations to xenobiotic metabolism. As such, targeting the human microbiome is an increasingly popular option for therapeutic interventions. However, traditional therapies that target the microbiome such as antibiotics lack specificity, which can affect the beneficial species of the microbiome and cause adverse health outcomes such as the rise of antimicrobial-resistant bacteria. Therefore, the research and development of specific, targeted antimicrobial therapies is crucial to effectively treating microbiome dysbioses.
CRISPR and CRISPRi provide easily modifiable, RNA-guided mechanisms mediated by the Cas9 or dCas9 enzymes to induce sequence-specific …


Chronic Jet Lag Alters Gut Microbiome And Mycobiome And Promotes The Progression Of Mafld In Hfhfd-Fed Mice, Ruoyi Zheng, Xingwei Xiang, Ying Shi, Anqi Qiu, Xin Luo, Junyan Xie, Ryan D. Russell, Dongmei Zhang Dec 2023

Chronic Jet Lag Alters Gut Microbiome And Mycobiome And Promotes The Progression Of Mafld In Hfhfd-Fed Mice, Ruoyi Zheng, Xingwei Xiang, Ying Shi, Anqi Qiu, Xin Luo, Junyan Xie, Ryan D. Russell, Dongmei Zhang

Health & Human Performance Faculty Publications and Presentations

Metabolic dysfunction-associated fatty liver disease (MAFLD) is the most common chronic liver disease worldwide. Circadian disruptors, such as chronic jet lag (CJ), may be new risk factors for MAFLD development. However, the roles of CJ on MAFLD are insufficiently understood, with mechanisms remaining elusive. Studies suggest a link between gut microbiome dysbiosis and MAFLD, but most of the studies are mainly focused on gut bacteria, ignoring other components of gut microbes, such as gut fungi (mycobiome), and few studies have addressed the rhythm of the gut fungi. This study explored the effects of CJ on MAFLD and its related microbiotic …


Effect Of Plant Genotype On Plant-Microbe Interactions And Multi-Generation Ecosystem Selection Of Microbial Communities Associated With Plant Biomass In Arabidopsis Thaliana, Nachiket Shankar Dec 2023

Effect Of Plant Genotype On Plant-Microbe Interactions And Multi-Generation Ecosystem Selection Of Microbial Communities Associated With Plant Biomass In Arabidopsis Thaliana, Nachiket Shankar

Graduate Doctoral Dissertations

The microbiome's role in shaping host phenotypes is a critical area of investigation, with implications for ecology, evolution, and host health. Dynamic plant-microbe interactions are influenced by factors like soil type, environment, and genotype. Understanding their impact on microbial communities is key for tailored plant benefits. An artificial ecosystem selection experiment was done for eight generations with Arabidopsis thaliana Ler and Cvi. This revealed distinct microbial communities shaped by genotypes and biomass treatments. Initially, environment dominated, but over time, genotype and biomass gained influence, explaining ~40% of the variation. Moreover, genotype-specific rhizobacterial associations were observed, enhancing understanding of community dynamics …


Succession And Determinants Of The Early Life Nasopharyngeal Microbiota In A South African Birth Cohort, Shantelle Claassen-Weitz, Sugnet Gardner-Lubbe, Yao Xia, Kilaza S. Mwaikono, Stephanie H. Mounaud, William C. Nierman, Lesley Workman, Heather J. Zar, Mark P. Nicol Dec 2023

Succession And Determinants Of The Early Life Nasopharyngeal Microbiota In A South African Birth Cohort, Shantelle Claassen-Weitz, Sugnet Gardner-Lubbe, Yao Xia, Kilaza S. Mwaikono, Stephanie H. Mounaud, William C. Nierman, Lesley Workman, Heather J. Zar, Mark P. Nicol

Research outputs 2022 to 2026

Background: Bacteria colonizing the nasopharynx play a key role as gatekeepers of respiratory health. Yet, dynamics of early life nasopharyngeal (NP) bacterial profiles remain understudied in low- and middle-income countries (LMICs), where children have a high prevalence of risk factors for lower respiratory tract infection. We investigated longitudinal changes in NP bacterial profiles, and associated exposures, among healthy infants from low-income households in South Africa. Methods: We used short fragment (V4 region) 16S rRNA gene amplicon sequencing to characterize NP bacterial profiles from 103 infants in a South African birth cohort, at monthly intervals from birth through the first 12 …


Microbiome And Virome Analysis In Early Life, Lakshmi Priyadarshini Nov 2023

Microbiome And Virome Analysis In Early Life, Lakshmi Priyadarshini

ORBioM (Open Research BioSciences Meeting)

A wide variety of microorganisms, including bifidobacteria, are known to colonise the human gastrointestinal tract. Bifidobacteria are beneficial bacteria known to be particularly prevalent and abundant in the gut of healthy and breast-fed infants. Together with bacteria, bacteriophages can be vertically transmitted from mother to newborn during vaginal delivery and they are believed to play a role in influencing bacterial levels and microbiota composition in early in life. While there is a significant amount of information on early bacterial colonisers in the infant gut, there is currently very limited knowledge of diversity and prevalence of gut bacteriophages and their impact …


Tumor-Resident Lactobacillus Iners Confer Chemoradiation Resistance Through Lactate-Induced Metabolic Rewiring, Lauren E. Colbert, Molly B. El Alam, Rui Wang, Tatiana Karpinets, David Lo, Erica J. Lynn, Timothy A. Harris, Jacob H. Elnaggar, Kyoko Yoshida-Court, Katarina Tomasic, Julianna K. Bronk, Julie Sammouri, Ananta V. Yanamandra, Adilene V. Olvera, Lily G. Carlin, Travis Sims, Andrea Y. Delgado Medrano, Tatiana Cisneros Napravnik, Madison O'Hara, Daniel Lin, Chike O. Abana, Hannah X. Li, Patricia J. Eifel, Anuja Jhingran, Melissa Joyner, Lilie Lin, Lois M. Ramondetta, Andrew M. Futreal Oct 2023

Tumor-Resident Lactobacillus Iners Confer Chemoradiation Resistance Through Lactate-Induced Metabolic Rewiring, Lauren E. Colbert, Molly B. El Alam, Rui Wang, Tatiana Karpinets, David Lo, Erica J. Lynn, Timothy A. Harris, Jacob H. Elnaggar, Kyoko Yoshida-Court, Katarina Tomasic, Julianna K. Bronk, Julie Sammouri, Ananta V. Yanamandra, Adilene V. Olvera, Lily G. Carlin, Travis Sims, Andrea Y. Delgado Medrano, Tatiana Cisneros Napravnik, Madison O'Hara, Daniel Lin, Chike O. Abana, Hannah X. Li, Patricia J. Eifel, Anuja Jhingran, Melissa Joyner, Lilie Lin, Lois M. Ramondetta, Andrew M. Futreal

School of Medicine Faculty Publications

Tumor microbiota can produce active metabolites that affect cancer and immune cell signaling, metabolism, and proliferation. Here, we explore tumor and gut microbiome features that affect chemoradiation response in patients with cervical cancer using a combined approach of deep microbiome sequencing, targeted bacterial culture, and in vitro assays. We identify that an obligate L-lactate-producing lactic acid bacterium found in tumors, Lactobacillus iners, is associated with decreased survival in patients, induces chemotherapy and radiation resistance in cervical cancer cells, and leads to metabolic rewiring, or alterations in multiple metabolic pathways, in tumors. Genomically similar L-lactate-producing lactic acid bacteria commensal to other …


Microbial Community Function And Bacterial Pathogen Composition In Pit Latrines In Peri-Urban Malaw, Savanna K. Smith, Benjamin B. Risk, Rochelle H. Holm, Elizabeth Tilley, Petros Chigwechokha, Drew Capone, Joe Brown, Francis L. De Los Reyes Iii Oct 2023

Microbial Community Function And Bacterial Pathogen Composition In Pit Latrines In Peri-Urban Malaw, Savanna K. Smith, Benjamin B. Risk, Rochelle H. Holm, Elizabeth Tilley, Petros Chigwechokha, Drew Capone, Joe Brown, Francis L. De Los Reyes Iii

Faculty Scholarship

Despite the widespread global reliance on pit latrines as improved sanitation systems, the decomposition of waste within pit latrines is poorly understood. One area needing elucidation is the characterization and function of microbial communities within pit latrines. To address this gap, we characterized the microbial communities of 55 lined pit latrines at three sampling layers from two communities in peri-urban Malawi. The microbial communities of the fecal sludge samples were analyzed for beta diversity, pathogen presence, and functional profiling. Household surveys were conducted and used to compare microbial community patterns to household characteristics and pit latrine use patterns. Compared to …


Investigating Soil Microbiome Changes During Panax Quinquefolius Cultivation In New Gardens, Pok Man Paul Wan Oct 2023

Investigating Soil Microbiome Changes During Panax Quinquefolius Cultivation In New Gardens, Pok Man Paul Wan

Electronic Thesis and Dissertation Repository

Ginseng (Panax quinquefolius) is susceptible to ginseng replant disease (GRD), resulting in root rot and decreased yield when ginseng is grown in soils previously used for ginseng crops. Although fungal and oomycete pathogens are implicated, GRD is a complex disease and the changes in the soil when initially cultivating ginseng that lead to GRD remain unclear. This thesis reported changes in the soil microbiome from three new gardens in Norfolk County, Ontario over three years starting from seeding with ginseng. Over this period of cultivation, metabarcoding of the V4 region of the 16S ribosomal RNA gene clearly showed …


The Effects Of Artificial Sweeteners On The Human Body And Microbiome, Lauren K. Steely Oct 2023

The Effects Of Artificial Sweeteners On The Human Body And Microbiome, Lauren K. Steely

Honors Theses

While artificial sweeteners are becoming a popular sugar alternative, their negative effects remain understudied and obscure to the general public. Whether people purposely incorporate them into their diet, artificial sweeteners are found in thousands of products and are consumed by all ages. The calories and weight gain associated with refined sugar often cause people to turn to zero-calorie options, thinking they are healthier; however, artificial sweeteners serve just as, if not greater, a threat to one’s health. Artificial sweeteners have been associated with weight gain, numerous health risks, type 2 diabetes, and negative effects on the gut microbiome. The goal …


Supporting Improvement In Academic Outcomes And Self-Efficacy For Black Male Varsity Athletes, Katherine M. Currie Oct 2023

Supporting Improvement In Academic Outcomes And Self-Efficacy For Black Male Varsity Athletes, Katherine M. Currie

Theses and Dissertations

Athletics can have a profoundly positive impact on high school students and can be an avenue for the athletes to attend college. However, some athletes struggle to cope with the demands of athletics and this is especially true for Black male athletes who are already members of a historically marginalized community. The purpose of this study is to examine the support that the Academic Success Center (ASC) offers for students and its impact on their academic outcomes and self-efficacy. A mixed methods data analysis revealed three themes: positive impact on academic outcomes, positive impact on self-efficacy and student frustration with …


A Prospective Randomized Clinical Trial To Assess Antibiotic Pocket Irrigation On Tissue Expander Breast Reconstruction, Jennifer N Walker, Blake M Hanson, Tayler Hunter, Shelby R Simar, Jesus M Duran Ramirez, Chloe L P Obernuefemann, Rajiv P Parikh, Marissa M Tenenbaum, Julie A Margenthaler, Scott J Hultgren, Terence M Myckatyn Sep 2023

A Prospective Randomized Clinical Trial To Assess Antibiotic Pocket Irrigation On Tissue Expander Breast Reconstruction, Jennifer N Walker, Blake M Hanson, Tayler Hunter, Shelby R Simar, Jesus M Duran Ramirez, Chloe L P Obernuefemann, Rajiv P Parikh, Marissa M Tenenbaum, Julie A Margenthaler, Scott J Hultgren, Terence M Myckatyn

Journal Articles

Bacterial infection is the most common complication following staged post-mastectomy breast reconstruction initiated with a tissue expander (TE). to limit bacterial infection, antibiotic irrigation of the surgical site is commonly performed despite little high-quality data to support this practice. We performed a prospective randomized control trial to compare the impact of saline irrigation alone to a triple antibiotic irrigation regimen (1 g cefazolin, 80 mg gentamicin, and 50,000 units of bacitracin in 500 mL of saline) for breast implant surgery. The microbiome in breasts with cancer (


Oral Dosages Of The Nsaid Aspirin Decreased The Growth Rate Of Species Found In The Human Gut Microbiome Including Akkermansia Muciniphila, Bacteroides Fragilis, Clostridium Sordellii, And Clostridium Difficile, Wyatt H. Greenbaum, Garrett J. Greenbaum, Anna Spiezio Sep 2023

Oral Dosages Of The Nsaid Aspirin Decreased The Growth Rate Of Species Found In The Human Gut Microbiome Including Akkermansia Muciniphila, Bacteroides Fragilis, Clostridium Sordellii, And Clostridium Difficile, Wyatt H. Greenbaum, Garrett J. Greenbaum, Anna Spiezio

PANDION: The Osprey Journal of Research and Ideas

Over past few decades, new insight has been revealed in the scientific community about the importance of the human gut microbiome relating to general health. It is known that imbalances in the species that reside in the human gut can cause organism-wide problems in humans. When prescribing or injecting oral medications, the thought of the downstream effects on the gut microbiome are not always considered. By exposing known healthy members of the gut; Akkermansia muciniphila, Bacteroides fragilis, Clostridium sordellii, and Clostridium difficile to the Aspirin, this study attempted to provide insight into the effects of the drug on bacterial growth. …


Human Alcohol-Microbiota Mice Have Increased Susceptibility To Bacterial Pneumonia, Kelly C. Cunningham, Deandra R. Smith, Daniel N. Villageliú, Christi M. Ellis, Amanda E. Ramer-Tait, Jeffrey D. Price, Todd A. Wyatt, Daren L. Knoell, Mystera M. Samuelson, Patricia E. Molina, David A. Welsh, Derrick R. Samuelson Sep 2023

Human Alcohol-Microbiota Mice Have Increased Susceptibility To Bacterial Pneumonia, Kelly C. Cunningham, Deandra R. Smith, Daniel N. Villageliú, Christi M. Ellis, Amanda E. Ramer-Tait, Jeffrey D. Price, Todd A. Wyatt, Daren L. Knoell, Mystera M. Samuelson, Patricia E. Molina, David A. Welsh, Derrick R. Samuelson

School of Medicine Faculty Publications

Preclinical studies have shown that chronic alcohol abuse leads to alterations in the gastrointestinal microbiota that are associated with behavior changes, physiological alterations, and immunological effects. However, such studies have been limited in their ability to evaluate the direct effects of alcohol-associated dysbiosis. To address this, we developed a humanized alcohol-microbiota mouse model to systematically evaluate the immunological effects of chronic alcohol abuse mediated by intestinal dysbiosis. Germ-free mice were colonized with human fecal microbiota from individuals with high and low Alcohol Use Disorders Identification Test (AUDIT) scores and bred to produce human alcohol-associated microbiota or human control-microbiota F1 progenies. …


Human Alcohol-Microbiota Mice Have Increased Susceptibility To Bacterial Pneumonia, Kelly C. Cunningham, Deandra R. Smith, Daniel Villageliú, Christi M. Ellis, Amanda E. Ramer-Tait, Jeffrey D. Price, Todd A. Wyatt, Daren L. Knoell, Patricia E. Molina, David A. Welsh, Derrick R. Samuelson Sep 2023

Human Alcohol-Microbiota Mice Have Increased Susceptibility To Bacterial Pneumonia, Kelly C. Cunningham, Deandra R. Smith, Daniel Villageliú, Christi M. Ellis, Amanda E. Ramer-Tait, Jeffrey D. Price, Todd A. Wyatt, Daren L. Knoell, Patricia E. Molina, David A. Welsh, Derrick R. Samuelson

Department of Food Science and Technology: Faculty Publications

Preclinical studies have shown that chronic alcohol abuse leads to alterations in the gastrointestinal microbiota that are associated with behavior changes, physiological alterations, and immunological effects. However, such studies have been limited in their ability to evaluate the direct effects of alcohol-associated dysbiosis. To address this, we developed a humanized alcoholmicrobiota mouse model to systematically evaluate the immunological effects of chronic alcohol abuse mediated by intestinal dysbiosis. Germ-free mice were colonized with human fecal microbiota from individuals with high and low Alcohol Use Disorders Identification Test (AUDIT) scores and bred to produce human alcohol-associated microbiota or human control-microbiota F1 progenies. …


Diet-Mediated Heart Disease Risk Via The Gut Microbiome, Emily Bolton Sep 2023

Diet-Mediated Heart Disease Risk Via The Gut Microbiome, Emily Bolton

Summer Community of Scholars Posters (RCEU and HCR Combined Programs)

Background: Recent advances in microbiome research suggest the gut microbiome has a role to play in the development of coronary artery disease (CAD). Though the American Heart Association (AHA) has broad dietary recommendations to prevent CAD, the role of the gut microbiome is not considered. The aim of this study is to examine existing literature on the role of probiotics (fermented dairy), prebiotics (high-fiber foods), and processed foods (NOVA groups 3 and 4) on markers of atherosclerosis via the gut microbiome. Methods: A search was conducted for human intervention studies using PubMed, CINAHL, and Embase. Twenty-two articles met eligibility and …


Sex-Dependent Effects Of Intestinal Microbiome Manipulation In A Mouse Model Of Alzheimer’S Disease, Harpreet Kaur, Suba Nookala, Surjeet Singh, Santhosh Mukundan, Kumi Nagamoto-Combs, Colin K. Combs Sep 2023

Sex-Dependent Effects Of Intestinal Microbiome Manipulation In A Mouse Model Of Alzheimer’S Disease, Harpreet Kaur, Suba Nookala, Surjeet Singh, Santhosh Mukundan, Kumi Nagamoto-Combs, Colin K. Combs

Biomedical Sciences Faculty Publications

Mechanisms linking intestinal bacteria and neurodegenerative diseases such as Alzheimer’s disease (AD) are still unclear. We hypothesized that intestinal dysbiosis might potentiate AD, and manipulating the microbiome to promote intestinal eubiosis and immune homeostasis may improve AD-related brain changes. This study assessed sex differences in the effects of oral probiotic, antibiotics, and synbiotic treatments in the AppNL-G-F mouse model of AD. The fecal microbiome demonstrated significant correlations between bacterial genera in AppNL-G-F mice and Aβ plaque load, gliosis, and memory performance. Female and not male AppNL-G-F mice fed probiotic but not synbiotic exhibited a decrease in Aβ plaques, microgliosis, brain …


Integrating Current Analyses Of The Breast Cancer Microbiome, Sidra Sohail, Michael B. Burns Sep 2023

Integrating Current Analyses Of The Breast Cancer Microbiome, Sidra Sohail, Michael B. Burns

Biology: Faculty Publications and Other Works

Many cancer types have significant associations with their resident microbial communities —emerging evidence suggests that breast cancers also interact with the local tissue-associated microbiota. Microbiome research advances rapidly and analysis pipelines and databases are updated frequently. This dynamic environment makes comparative evaluations challenging. Here, we have integrated all publicly available studies related to breast cancer and the mammary microbiome in light of advances in this rapidly progressing field. Based on alpha diversity, beta diversity, proportional abundance, and statistical analyses, we observed differences between our modern analytical approaches and the original findings. We were able to classify and identify additional taxa …